FvH4_4g03090

Protein of unknown function (DUF668)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
2762588 .. 2764348
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03090.t1

Sequence Viewer

Length: 1761 bp
ATGGTTGCAGAGCCTTGGATTCTGAAGATGGGTAACCAGGTAAGCTCAAATCTAAAGCATGCTCTTTTACTTCAGCATTCAAAGAAATCAAACCCAAAAAGCATACCCAATAACTCAAACACCAAAAGCCAGAAGCAGACTATAGGGATTCTTTCATTTGAGGTAGCTAATGTTATGTCCAAGACTGTTTATTTATACAAGTCCCTCACAGACTCTGAGATCTCTAAGCTTAAAGTTGAGATCTTGAAGTCTGAGGGGGTCCAGAAGTTGGTCTCTTCTGATGAGGCCTATCTTCTTGAGCTTGCTTTGGCTGAGAAGCTAGAGGACCTGAACCGGGTTGCTGCTGTGGTGGGCCGGCTTGGGAAGAGGTGTGTTGAGCCGGCTCTGCAGGGTTTTGAGCATGTTTATAGTGACCTTGTTAATGGGGTTATTGATGTTAGGGAGTTGGGGTTTTTGGTGAAGGATATGGAGGGTATGATTAGGAAGTTGGAGAGGTATGTGAATGCTACTTCCAATTTGTATAGTGAAATGGAGGTGTTGAATGAGTTGGAGCAAGGTACTAAGAAGTTTCAGAACAATCAACATGAGGAGAGCAAGAGGGCTTTTGAGCAGAAGCTGATTTGGCAGAAACAAGATGTGAGGCATCTCAAGGACATTTCAATTTGGAACCAGACTTATGATAAGGTTGTGGAGTTGTTGGCAAGGACGGTTTGCACCATTTATGCTACAATTCGTGGGGTTTTCGGAGAATCTGCTTTGAGCAAGGACCATGGTGGATCTTCGCCGCCGGGTCAGATTGATGTGAGGAGGGTTTCCCAGGAGCCTTTGAAGAGGGTTCTTAGCAAGAAAAAAGGGTGTCATTCAGGGCCGGTTGAGAAAGCTGTTGTGGTGAAAAGGGGGTCAAGTTTTAAGCCTCAATTTGAATCAAGGAGAGGTGAATTGGCGTTGTTTCGGGCAGATGATTTCAACTTTCCCTGCGGAACTAGCCCAGGGAGGCTTTTCATGGACTGCCTAATTAGCAGTTCGGTTGTTGATGATGATGATGTTGGCAGTGCTGGTGGATATGAGGAGCGAAGTAGCCAATTTTCGGGTTGTGGTGTGGCAAGTGGTGGTTTGAGGAGAGATTACCCTAACCATTCAGGTTGTTTTAGTAGAGTGCAAATGGGTGTTCAATCTAACTCTGGCGGAATGAATGGTGCACCGTTTGGCCCCAAGAGTAGGTTGATGGTATATGCTCCACCTTCTACTGTGGGAGGCTCTGCTCTAGCTTTGCATTATGCAAATGTTATAATTGTGGTTGAGAAGTTGCTTCGCTACCCTTATCTAGTGGGTGAGGAAGCTAGGGACGATTTGTATCATATGTTGCCAACAAGTTTAAGACTGTCTCTGAGGACTAATCTCAAGTCCTATGTCAAGAATTTGGCTATATATGATGCACCTCTTGCTCATGATTGGAAGGAGACTCTTGATGGGATATTGAGGTGGCTTGCCCCACTGGCACATAACATGATCAGATGGCAAAGTGAGCGTAATTTTGAGCAACAGCAAATTGTTACTCGAACACATGTTCTTCTGCTTCAGACATTGTATTTTGCTGATCGAAAGAAGACAGAGGCAGCAATTTGTCAGCTTCTTGTCGGGTTGAATTATATATGCCGTTATGAGCATCAGCAGAATGCATTATTAGATTGTGCGAGTAGTTTTGATTTTGAAGACTGCATGGAGTGGCAAATGCAATGTGGAGCTTCTTTTGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

587

Amino Acids

65.77

Weight (kDa)

8.29

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3475 PF11961 50 - 106 2.3e-25 Domain of unknown function (DUF3475)
DUF668 PF05003 416 - 505 6.3e-34 Protein of unknown function (DUF668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23160
fragaria_vesca FvH4_4g03090
malus_domestica MD13G1210100.v1.1 MD16G1213000.v1.1
prunus_persica Prupe.1G034600_v2.0.a1
pyrus_communis pycom13g18270 pycom16g17890
rosa_chinensis RchiOBHm_Chr4g0391361
rosa_laevigata RLG00000009869
rosa_multiflora Rmu_sc0005322.1_g000036
rosa_roxburghii Rroxscaffold_5G00337110
rosa_rugosa Rorug03G0335700
rosa_samantha Rh4AG036800 Rh4BG031500 Rh4CG040100 Rh4DG034500
rosa_wichuraiana Rw4G002890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1289
AccB7I CCANNNNNTGG 1 cut(s) 268
AciI CCGC 3 cut(s) 785, 978, 1185
AclWI GGATC 1 cut(s) 784
AcsI RAATTY 1 cut(s) 1417
AcuI CTGAAG 3 cut(s) 44, 56, 1562
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 4 cut(s) 268, 334, 1087, 1218
AflIII ACRYGT 1 cut(s) 1564
AjnI CCWGG 3 cut(s) 36, 816, 988
Alw21I GWGCWC 1 cut(s) 1201
Alw26I GTCTC 3 cut(s) 277, 1389, 1454
Alw44I GTGCAC 1 cut(s) 1197
AlwI GGATC 1 cut(s) 784
AlwNI CAGNNNCTG 2 cut(s) 215, 616
AoxI GGCC 4 cut(s) 285, 352, 866, 1207
ApaLI GTGCAC 1 cut(s) 1197
ApeKI GCWGC 2 cut(s) 341, 1616
ApoI RAATTY 1 cut(s) 1417
AspS9I GGNCC 6 cut(s) 259, 325, 352, 766, 866, 1208
AsuC2I CCSGG 2 cut(s) 335, 789
AsuHPI GGTGA 4 cut(s) 469, 901, 947, 1343
AvaII GGWCC 3 cut(s) 259, 325, 766
BaeGI GKGCMC 1 cut(s) 1201
BbsI GAAGAC 2 cut(s) 1613, 1719
Bbv12I GWGCWC 1 cut(s) 1201
BbvI GCAGC 2 cut(s) 328, 1628
BccI CCATC 4 cut(s) 22, 1219, 1463, 1509
BceAI ACGGC 1 cut(s) 1641
BciT130I CCWGG 3 cut(s) 38, 818, 990
BclI TGATCA 1 cut(s) 1509
BcnI CCSGG 2 cut(s) 335, 789
BcoDI GTCTC 3 cut(s) 277, 1389, 1454
BfaI CTAG 5 cut(s) 320, 984, 1265, 1325, 1341
BfmI CTRYAG 2 cut(s) 141, 386
BglI GCCNNNNNGGC 1 cut(s) 1496
BglII AGATCT 2 cut(s) 219, 240
BisI GCNGC 3 cut(s) 342, 785, 1617
BlsI GCNGC 3 cut(s) 343, 786, 1618
Bme1390I CCNGG 5 cut(s) 38, 335, 789, 818, 990
Bme18I GGWCC 3 cut(s) 259, 325, 766
BmgT120I GGNCC 6 cut(s) 259, 325, 352, 766, 866, 1208
BmiI GGNNCC 4 cut(s) 260, 668, 822, 1210
BmrFI CCNGG 5 cut(s) 38, 335, 789, 818, 990
BmsI GCATC 3 cut(s) 652, 1423, 1675
BpiI GAAGAC 2 cut(s) 1613, 1719
BpuEI CTTGAG 3 cut(s) 317, 632, 1385
BpuMI CCSGG 2 cut(s) 335, 789
BsaBI GATNNNNATC 1 cut(s) 1353
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 5 cut(s) 14, 769, 816, 988, 989
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 4 cut(s) 268, 334, 1087, 1218
Bse118I RCCGGY 3 cut(s) 354, 379, 868
Bse1I ACTGG 1 cut(s) 1500
Bse3DI GCAATG 1 cut(s) 1742
Bse8I GATNNNNATC 1 cut(s) 1353
BseBI CCWGG 3 cut(s) 38, 818, 990
BseDI CCNNGG 5 cut(s) 14, 769, 816, 988, 989
BseJI GATNNNNATC 1 cut(s) 1353
BseLI CCNNNNNNNGG 4 cut(s) 268, 334, 1087, 1218
BseMI GCAATG 1 cut(s) 1742
BseMII CTCAG 4 cut(s) 207, 243, 303, 1379
BseNI ACTGG 1 cut(s) 1500
BseRI GAGGAG 4 cut(s) 602, 820, 1082, 1132
BseSI GKGCMC 1 cut(s) 1201
BseXI GCAGC 2 cut(s) 328, 1628
BshFI GGCC 4 cut(s) 287, 354, 868, 1209
BsiHKAI GWGCWC 1 cut(s) 1201
BsiSI CCGG 5 cut(s) 334, 355, 380, 788, 869
BslFI GGGAC 2 cut(s) 187, 1358
BslI CCNNNNNNNGG 4 cut(s) 268, 334, 1087, 1218
BsmAI GTCTC 3 cut(s) 277, 1389, 1454
BsmFI GGGAC 2 cut(s) 187, 1358
BsmI GAATGC 3 cut(s) 76, 508, 1681
BsnI GGCC 4 cut(s) 287, 354, 868, 1209
Bso31I GGTCTC 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 1201
Bsp143I GATC 5 cut(s) 219, 240, 776, 1509, 1597
Bsp19I CCATGG 1 cut(s) 769
BspACI CCGC 3 cut(s) 785, 978, 1185
BspANI GGCC 4 cut(s) 287, 354, 868, 1209
BspCNI CTCAG 4 cut(s) 208, 244, 304, 1380
BspHI TCATGA 1 cut(s) 1447
BspLI GGNNCC 4 cut(s) 260, 668, 822, 1210
BspMAI CTGCAG 1 cut(s) 390
BspPI GGATC 1 cut(s) 784
BspTNI GGTCTC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 1742
BsrFI RCCGGY 3 cut(s) 354, 379, 868
BsrI ACTGG 1 cut(s) 1500
BssAI RCCGGY 3 cut(s) 354, 379, 868
BssECI CCNNGG 5 cut(s) 14, 769, 816, 988, 989
BssMI GATC 5 cut(s) 219, 240, 776, 1509, 1597
BssT1I CCWWGG 2 cut(s) 14, 769
Bst2UI CCWGG 3 cut(s) 38, 818, 990
Bst4CI ACNGT 5 cut(s) 187, 709, 1203, 1249, 1383
Bst6I CTCTTC 3 cut(s) 280, 359, 824
BstAPI GCANNNNNTGC 1 cut(s) 1442
BstC8I GCNNGC 5 cut(s) 60, 303, 356, 381, 1488
BstDEI CTNAG 7 cut(s) 216, 225, 252, 312, 561, 839, 1388
BstDSI CCRYGG 1 cut(s) 769
BstEII GGTNACC 1 cut(s) 32
BstKTI GATC 5 cut(s) 222, 243, 779, 1512, 1600
BstMAI GTCTC 3 cut(s) 277, 1389, 1454
BstMBI GATC 5 cut(s) 219, 240, 776, 1509, 1597
BstMWI GCNNNNNNNGC 7 cut(s) 385, 622, 984, 1017, 1442, 1496, 1525
BstNI CCWGG 3 cut(s) 38, 818, 990
BstNSI RCATGY 3 cut(s) 62, 404, 1568
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 5 cut(s) 36, 333, 787, 816, 988
BstSFI CTRYAG 2 cut(s) 141, 386
BstSLI GKGCMC 1 cut(s) 1201
BstV1I GCAGC 2 cut(s) 328, 1628
BstV2I GAAGAC 2 cut(s) 1613, 1719
BstX2I RGATCY 3 cut(s) 219, 240, 776
BstYI RGATCY 3 cut(s) 219, 240, 776
BsuRI GGCC 4 cut(s) 287, 354, 868, 1209
BtgI CCRYGG 1 cut(s) 769
BtsI GCAGTG 1 cut(s) 1057
BtsIMutI CAGTG 2 cut(s) 1057, 1493
Cac8I GCNNGC 5 cut(s) 60, 303, 356, 381, 1488
CaiI CAGNNNCTG 2 cut(s) 215, 616
CciI TCATGA 1 cut(s) 1447
Cfr10I RCCGGY 3 cut(s) 354, 379, 868
Cfr13I GGNCC 6 cut(s) 259, 325, 352, 766, 866, 1208
CsiI ACCWGGT 1 cut(s) 36
Csp6I GTAC 1 cut(s) 558
CviAII CATG 9 cut(s) 59, 401, 584, 770, 1003, 1448, 1507, 1565, 1720
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 7 cut(s) 216, 225, 252, 312, 561, 839, 1388
DpnI GATC 5 cut(s) 221, 242, 778, 1511, 1599
DpnII GATC 5 cut(s) 219, 240, 776, 1509, 1597
Eam1104I CTCTTC 3 cut(s) 280, 359, 824
EarI CTCTTC 3 cut(s) 280, 359, 824
EciI GGCGGA 1 cut(s) 1200
Eco130I CCWWGG 2 cut(s) 14, 769
Eco147I AGGCCT 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 277
Eco47I GGWCC 3 cut(s) 259, 325, 766
Eco57I CTGAAG 3 cut(s) 44, 56, 1562
Eco91I GGTNACC 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 325
EcoO65I GGTNACC 1 cut(s) 32
EcoRII CCWGG 3 cut(s) 36, 816, 988
EcoT14I CCWWGG 2 cut(s) 14, 769
EcoT22I ATGCAT 1 cut(s) 1681
ErhI CCWWGG 2 cut(s) 14, 769
FaeI CATG 9 cut(s) 62, 404, 587, 773, 1006, 1451, 1510, 1568, 1723
FaqI GGGAC 2 cut(s) 187, 1358
FatI CATG 9 cut(s) 58, 400, 583, 769, 1002, 1447, 1506, 1564, 1719
FauNDI CATATG 1 cut(s) 1359
FbaI TGATCA 1 cut(s) 1509
Fnu4HI GCNGC 3 cut(s) 342, 785, 1617
Fsp4HI GCNGC 3 cut(s) 342, 785, 1617
FspBI CTAG 5 cut(s) 320, 984, 1265, 1325, 1341
GluI GCNGC 3 cut(s) 342, 785, 1617
HaeIII GGCC 4 cut(s) 287, 354, 868, 1209
HapII CCGG 5 cut(s) 334, 355, 380, 788, 869
Hin1II CATG 9 cut(s) 62, 404, 587, 773, 1006, 1451, 1510, 1568, 1723
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 6 cut(s) 19, 148, 212, 749, 923, 1462
HpaII CCGG 5 cut(s) 334, 355, 380, 788, 869
HphI GGTGA 4 cut(s) 469, 901, 947, 1343
Hpy166II GTNNAC 1 cut(s) 1199
Hpy188III TCNNGA 6 cut(s) 244, 262, 296, 1414, 1448, 1466
Hpy8I GTNNAC 1 cut(s) 1199
HpyAV CCTTC 3 cut(s) 454, 1251, 1450
HpyCH4III ACNGT 5 cut(s) 187, 709, 1203, 1249, 1383
HpyF10VI GCNNNNNNNGC 7 cut(s) 385, 622, 984, 1017, 1442, 1496, 1525
HpyF3I CTNAG 7 cut(s) 216, 225, 252, 312, 561, 839, 1388
Hsp92II CATG 9 cut(s) 62, 404, 587, 773, 1006, 1451, 1510, 1568, 1723
KroI GCCGGC 2 cut(s) 354, 379
KroNI GCCGGC 2 cut(s) 356, 381
Ksp22I TGATCA 1 cut(s) 1509
Kzo9I GATC 5 cut(s) 219, 240, 776, 1509, 1597
LmnI GCTCC 5 cut(s) 550, 820, 1069, 1240, 1742
Lsp1109I GCAGC 2 cut(s) 328, 1628
LweI GCATC 3 cut(s) 652, 1423, 1675
MabI ACCWGGT 1 cut(s) 36
MaeI CTAG 5 cut(s) 320, 984, 1265, 1325, 1341
MaeIII GTNAC 3 cut(s) 32, 410, 1552
MalI GATC 5 cut(s) 221, 242, 778, 1511, 1599
MboI GATC 5 cut(s) 219, 240, 776, 1509, 1597
MboII GAAGA 9 cut(s) 37, 267, 284, 376, 771, 841, 1562, 1618, 1724
MflI RGATCY 3 cut(s) 219, 240, 776
MhlI GDGCHC 1 cut(s) 1201
MlyI GAGTC 2 cut(s) 206, 1456
MmeI TCCRAC 2 cut(s) 468, 528
Mph1103I ATGCAT 1 cut(s) 1681
MroNI GCCGGC 2 cut(s) 354, 379
MseI TTAA 5 cut(s) 231, 420, 909, 1376, 1759
MspI CCGG 5 cut(s) 334, 355, 380, 788, 869
MspR9I CCNGG 5 cut(s) 38, 335, 789, 818, 990
Mva1269I GAATGC 3 cut(s) 76, 508, 1681
MvaI CCWGG 3 cut(s) 38, 818, 990
MwoI GCNNNNNNNGC 7 cut(s) 385, 622, 984, 1017, 1442, 1496, 1525
NaeI GCCGGC 2 cut(s) 356, 381
NciI CCSGG 2 cut(s) 335, 789
NcoI CCATGG 1 cut(s) 769
NdeI CATATG 1 cut(s) 1359
NdeII GATC 5 cut(s) 219, 240, 776, 1509, 1597
NgoMIV GCCGGC 2 cut(s) 354, 379
NlaIII CATG 9 cut(s) 62, 404, 587, 773, 1006, 1451, 1510, 1568, 1723
NlaIV GGNNCC 4 cut(s) 260, 668, 822, 1210
NmuCI GTSAC 1 cut(s) 410
NsiI ATGCAT 1 cut(s) 1681
NspI RCATGY 3 cut(s) 62, 404, 1568
PaeI GCATGC 1 cut(s) 62
PagI TCATGA 1 cut(s) 1447
PasI CCCWGGG 1 cut(s) 989
PceI AGGCCT 1 cut(s) 287
PciI ACATGT 1 cut(s) 1564
PctI GAATGC 3 cut(s) 76, 508, 1681
PdiI GCCGGC 2 cut(s) 356, 381
PfeI GAWTC 4 cut(s) 19, 148, 749, 923
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 3 cut(s) 343, 786, 1618
PleI GAGTC 2 cut(s) 206, 1456
PpsI GAGTC 2 cut(s) 206, 1456
PpuMI RGGWCCY 1 cut(s) 325
PscI ACATGT 1 cut(s) 1564
PsiI TTATAA 1 cut(s) 1289
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 3 cut(s) 36, 816, 988
PspEI GGTNACC 1 cut(s) 32
PspGI CCWGG 3 cut(s) 36, 816, 988
PspN4I GGNNCC 4 cut(s) 260, 668, 822, 1210
PspPI GGNCC 6 cut(s) 259, 325, 352, 766, 866, 1208
PspPPI RGGWCCY 1 cut(s) 325
PstI CTGCAG 1 cut(s) 390
PstNI CAGNNNCTG 2 cut(s) 215, 616
PsuI RGATCY 3 cut(s) 219, 240, 776
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
SaqAI TTAA 5 cut(s) 231, 420, 909, 1376, 1759
SatI GCNGC 3 cut(s) 342, 785, 1617
Sau3AI GATC 5 cut(s) 219, 240, 776, 1509, 1597
Sau96I GGNCC 6 cut(s) 259, 325, 352, 766, 866, 1208
SchI GAGTC 2 cut(s) 206, 1456
ScrFI CCNGG 5 cut(s) 38, 335, 789, 818, 990
SduI GDGCHC 1 cut(s) 1201
SexAI ACCWGGT 1 cut(s) 36
SfaNI GCATC 3 cut(s) 652, 1423, 1675
SfcI CTRYAG 2 cut(s) 141, 386
SinI GGWCC 3 cut(s) 259, 325, 766
SmlI CTYRAG 3 cut(s) 296, 647, 1400
SmoI CTYRAG 3 cut(s) 296, 647, 1400
SphI GCATGC 1 cut(s) 62
SseBI AGGCCT 1 cut(s) 287
SsiI CCGC 3 cut(s) 785, 978, 1185
SspMI CTAG 5 cut(s) 320, 984, 1265, 1325, 1341
StuI AGGCCT 1 cut(s) 287
StyD4I CCNGG 5 cut(s) 36, 333, 787, 816, 988
StyI CCWWGG 2 cut(s) 14, 769
TaaI ACNGT 5 cut(s) 187, 709, 1203, 1249, 1383
TaqI TCGA 2 cut(s) 1558, 1600
TauI GCSGC 1 cut(s) 787
TfiI GAWTC 4 cut(s) 19, 148, 749, 923
Tru1I TTAA 5 cut(s) 231, 420, 909, 1376, 1759
Tru9I TTAA 5 cut(s) 231, 420, 909, 1376, 1759
TscAI CASTG 2 cut(s) 1057, 1500
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 2 cut(s) 341, 1616
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 144, 991, 1205
TspRI CASTG 2 cut(s) 1057, 1500
Van91I CCANNNNNTGG 1 cut(s) 268
VneI GTGCAC 1 cut(s) 1197
VpaK11BI GGWCC 3 cut(s) 259, 325, 766
XapI RAATTY 1 cut(s) 1417
XceI RCATGY 3 cut(s) 62, 404, 1568
XspI CTAG 5 cut(s) 320, 984, 1265, 1325, 1341
Zsp2I ATGCAT 1 cut(s) 1681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.