Rorug03G0335700

Protein of unknown function (DUF668)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014582
Physical Location & Seq
Reverse (-)
39441550 .. 39442239
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0335700.1

Sequence Viewer

Length: 606 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGCATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTCTGTTTCATATTCTTCCTCACACTTCAACACTAATACTAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTTCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3475 DUF668

Protein Analysis

201

Amino Acids

22.71

Weight (kDa)

6.09

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 6.5e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23160
fragaria_vesca FvH4_4g03090
malus_domestica MD13G1210100.v1.1 MD16G1213000.v1.1
prunus_persica Prupe.1G034600_v2.0.a1
pyrus_communis pycom13g18270 pycom16g17890
rosa_chinensis RchiOBHm_Chr4g0391361
rosa_laevigata RLG00000009869
rosa_multiflora Rmu_sc0005322.1_g000036
rosa_roxburghii Rroxscaffold_5G00337110
rosa_rugosa Rorug03G0335700
rosa_samantha Rh4AG036800 Rh4BG031500 Rh4CG040100 Rh4DG034500
rosa_wichuraiana Rw4G002890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 593
AclWI GGATC 4 cut(s) 141, 327, 340, 375
AcsI RAATTY 1 cut(s) 442
AcyI GRCGYC 1 cut(s) 590
AfaI GTAC 2 cut(s) 91, 487
AfiI CCNNNNNNNGG 1 cut(s) 580
AgsI TTSAA 2 cut(s) 472, 556
AhlI ACTAGT 3 cut(s) 314, 359, 482
AjnI CCWGG 2 cut(s) 92, 545
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 2 cut(s) 53, 199
AluI AGCT 2 cut(s) 53, 199
Alw21I GWGCWC 1 cut(s) 581
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 577
AlwI GGATC 4 cut(s) 141, 327, 340, 375
Ama87I CYCGRG 1 cut(s) 261
ApaLI GTGCAC 1 cut(s) 577
ApeKI GCWGC 2 cut(s) 50, 293
ApoI RAATTY 1 cut(s) 442
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
Asp700I GAANNNNTTC 2 cut(s) 316, 429
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 535
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 354
BaeGI GKGCMC 3 cut(s) 164, 306, 581
BamHI GGATCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 262
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 581
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 1 cut(s) 368
BceAI ACGGC 2 cut(s) 72, 597
BciT130I CCWGG 2 cut(s) 94, 547
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 3 cut(s) 314, 359, 482
BfaI CTAG 3 cut(s) 315, 360, 483
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 51, 294
BlsI GCNGC 2 cut(s) 52, 295
Bme1390I CCNGG 2 cut(s) 94, 547
Bme18I GGWCC 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 5 cut(s) 6, 245, 334, 355, 403
BmrFI CCNGG 2 cut(s) 94, 547
BpmI CTGGAG 3 cut(s) 93, 179, 282
BpuEI CTTGAG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 590
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse1I ACTGG 3 cut(s) 205, 299, 421
BseBI CCWGG 2 cut(s) 94, 547
BseGI GGATG 1 cut(s) 517
BseLI CCNNNNNNNGG 1 cut(s) 580
BseNI ACTGG 3 cut(s) 205, 299, 421
BseRI GAGGAG 3 cut(s) 44, 548, 551
BseSI GKGCMC 3 cut(s) 164, 306, 581
BseXI GCAGC 2 cut(s) 62, 280
BsiHKAI GWGCWC 1 cut(s) 581
BsiHKCI CYCGRG 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 580
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 4 cut(s) 164, 262, 306, 581
Bsp143I GATC 6 cut(s) 133, 186, 332, 380, 388, 540
BspLI GGNNCC 5 cut(s) 6, 245, 334, 355, 403
BspPI GGATC 4 cut(s) 141, 327, 340, 375
BsrI ACTGG 3 cut(s) 205, 299, 421
BssMI GATC 6 cut(s) 133, 186, 332, 380, 388, 540
BssNI GRCGYC 1 cut(s) 590
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 547
BstACI GRCGYC 1 cut(s) 590
BstEII GGTNACC 1 cut(s) 598
BstF5I GGATG 1 cut(s) 517
BstKTI GATC 6 cut(s) 136, 189, 335, 383, 391, 543
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 6 cut(s) 133, 186, 332, 380, 388, 540
BstNI CCWGG 2 cut(s) 94, 547
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 92, 545
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 581
BstV1I GCAGC 2 cut(s) 62, 280
BstX2I RGATCY 4 cut(s) 133, 186, 332, 380
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 4 cut(s) 133, 186, 332, 380
BtsCI GGATG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 354
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 2 cut(s) 90, 486
CviAII CATG 3 cut(s) 70, 215, 307
CviJI RGCY 5 cut(s) 53, 87, 199, 260, 293
CviKI_1 RGCY 5 cut(s) 53, 87, 199, 260, 293
CviQI GTAC 2 cut(s) 90, 486
DpnI GATC 6 cut(s) 135, 188, 334, 382, 390, 542
DpnII GATC 6 cut(s) 133, 186, 332, 380, 388, 540
DraI TTTAAA 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 598
EcoO65I GGTNACC 1 cut(s) 598
EcoRII CCWGG 2 cut(s) 92, 545
EcoT38I GRGCYC 1 cut(s) 262
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 6 cut(s) 71, 144, 210, 216, 308, 454
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 2 cut(s) 51, 294
FokI GGATG 1 cut(s) 504
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 51, 294
FspBI CTAG 3 cut(s) 315, 360, 483
GluI GCNGC 2 cut(s) 51, 294
GsuI CTGGAG 3 cut(s) 93, 179, 282
Hin1I GRCGYC 1 cut(s) 590
Hin1II CATG 3 cut(s) 73, 218, 310
HinfI GANTC 3 cut(s) 100, 123, 178
HphI GGTGA 1 cut(s) 535
Hpy166II GTNNAC 2 cut(s) 357, 579
Hpy188III TCNNGA 5 cut(s) 110, 182, 247, 263, 434
Hpy8I GTNNAC 2 cut(s) 357, 579
HpyAV CCTTC 1 cut(s) 419
HpyCH4IV ACGT 2 cut(s) 252, 590
HpyCH4V TGCA 2 cut(s) 525, 579
HpySE526I ACGT 2 cut(s) 252, 590
Hsp92I GRCGYC 1 cut(s) 590
Hsp92II CATG 3 cut(s) 73, 218, 310
Kzo9I GATC 6 cut(s) 133, 186, 332, 380, 388, 540
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 2 cut(s) 62, 280
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 360, 483
MaeII ACGT 2 cut(s) 252, 590
MaeIII GTNAC 1 cut(s) 598
MalI GATC 6 cut(s) 135, 188, 334, 382, 390, 542
MboI GATC 6 cut(s) 133, 186, 332, 380, 388, 540
MboII GAAGA 1 cut(s) 450
MflI RGATCY 4 cut(s) 133, 186, 332, 380
MhlI GDGCHC 4 cut(s) 164, 262, 306, 581
MluCI AATT 2 cut(s) 346, 442
MroXI GAANNNNTTC 2 cut(s) 316, 429
MseI TTAA 2 cut(s) 156, 440
MspA1I CMGCKG 2 cut(s) 53, 199
MspR9I CCNGG 2 cut(s) 94, 547
MvaI CCWGG 2 cut(s) 94, 547
NdeII GATC 6 cut(s) 133, 186, 332, 380, 388, 540
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 5 cut(s) 6, 245, 334, 355, 403
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 587
PdmI GAANNNNTTC 2 cut(s) 316, 429
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 2 cut(s) 52, 295
Psp6I CCWGG 2 cut(s) 92, 545
PspEI GGTNACC 1 cut(s) 598
PspGI CCWGG 2 cut(s) 92, 545
PspN4I GGNNCC 5 cut(s) 6, 245, 334, 355, 403
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 4 cut(s) 133, 186, 332, 380
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 2 cut(s) 91, 487
RsaNI GTAC 2 cut(s) 90, 486
SaqAI TTAA 2 cut(s) 156, 440
SatI GCNGC 2 cut(s) 51, 294
Sau3AI GATC 6 cut(s) 133, 186, 332, 380, 388, 540
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 2 cut(s) 94, 547
SduI GDGCHC 4 cut(s) 164, 262, 306, 581
SetI ASST 9 cut(s) 55, 98, 201, 255, 284, 410, 554, 593, 605
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 261
SmiI ATTTAAAT 1 cut(s) 441
SmlI CTYRAG 2 cut(s) 128, 261
SmoI CTYRAG 2 cut(s) 128, 261
SpeI ACTAGT 3 cut(s) 314, 359, 482
Sse9I AATT 2 cut(s) 346, 442
SspMI CTAG 3 cut(s) 315, 360, 483
StyD4I CCNGG 2 cut(s) 92, 545
SwaI ATTTAAAT 1 cut(s) 441
TaiI ACGT 2 cut(s) 255, 593
TaqI TCGA 1 cut(s) 262
TasI AATT 2 cut(s) 346, 442
TatI WGTACW 1 cut(s) 485
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 2 cut(s) 156, 440
Tru9I TTAA 2 cut(s) 156, 440
TscAI CASTG 1 cut(s) 306
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 3 cut(s) 290, 438, 441
TspRI CASTG 1 cut(s) 306
VneI GTGCAC 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 354
XapI RAATTY 1 cut(s) 442
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 429
XspI CTAG 3 cut(s) 315, 360, 483
ZraI GACGTC 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.