Rw4G002890

Protein of unknown function (DUF668)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
5747311 .. 5749807
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002890.1

Sequence Viewer

Length: 1785 bp
ATGGTTGCAGAGCTTTGGATATTGAAGATGGGTAACCAGGTAAGCTCGAATCTAAAGCACGCTCTTTTACTTCAGCATTCAAAGAAATCAAACCCAAAAGCCACACCCAATAACTCCAACACCAAAACCCAGAAGCAGACTATAGGGATTCTTTCATTTGAGGTAGCTAATGTTATGTCCAAGACTGTTTATTTACACAAGTCCCTCACAGACTCTGAGATCTCTAAGCTTAAAGTTGAGATCTTGAAGTCTGAGGGGGTCCAGAGGTTGGTCTCTTCTGATGAGGCTTATCTTCTTGAGCTTGCTTTGGCTGAGAAGCTAGAGGACCTGAACCGGGTCGCTGCGGTGGTGGCCAGGCTCGGCAAGAGGTGTGTTGAGCCGGCTCTGCAGGGTTTTGAGCATGTTTATGGTGACCTTGTTAATGGGGTTATTGAAGTTAGGGAGTTGGGGTTTTTGGTGAAGGATATGGAGGGTATGATTAGGAAGTTGGAGAGGTATGTGAATGCCACCTCCAATTTGTATAGTGAATTGGAGGTGTTGAATGAGTTGGAGCAAGCCACCAAGAAATTTCAGAACAACCAACATGAGGAGAGCAAGAGGGCTTTTGAGCAGAAGCTGATTTGGCAGAAGCAAGATGTGAGGCATCTCAAGGACATTTCACTTTGGAACCAGACTTATGATAAGGTTGTGGAGTTGTTGGCAAGGACGGTTTGTACCATTTATGCTACGATTCGTGGGGTTTTCGGAGACTCTGGTTTGAGCAGGGACCATGGAGGGTCAATTGGTGGAGGTTCGCCTTCTCCTGTGTCTGGTCAGATTGATGCGAGGAGGGTTTCCCAGGAGCCATTGAAGAGGGTTCTTAGCAAGAAAAAAGGGTTTCATTCGGGGCCATTTGAGAAAGCTGTGGTGGTGAAAAAGGGGTCAAGTTTTAAGCCTCAGTTTGATTCAAGGAGAGGAGGTGAATTGGCGTTGTTTCGGGCAGAGGATTTCAACTTTCCCTGTGGAACTAGCCCAGGGAGGCTTTTCATGGACTGCCTAGTAAGCAGTTCGGTTGTTGATGATGATGATGTTGACAGTGCTGGTGGATACGAGGAGCGGGGTAGCCAAACTTCAAGTTGTGGCGTGGCAAATGGTGGTTTGAGGAGAGATTACCCCAACCATTCGGGTTGTTTTAGTAGAGTGCAAATGGTTATGCAATCTAACTCCGGTGGAATGAATGGTGCCCCGTTTGGTCCCAAGAGTAGGTTGATGGTTTATGCTCCACCTTCTACTGTGGGAGGCTCTGCTCTAGCTTTGCATTATGCAAATGTGATAATTGTGGTAGAGAAGTTGCTTCGCTACCCTTATCTAGTGGGTGAGGAAGCTAGGGACGATTTGTATCATATGTTGCCAACAAGTTTAAGACTGTCTCTCAGGACTAATCTCAAGTCCTATGTCAAGAATTTGGCTATATATGATGCACCTCTTGCTCATGATTGGAAGGAGACTCTTGATGGGATATTGAGGTGGCTTGCCCCACTGGCACATAACATGATCAGATGGCAAAGTGAGCGTAATTTTGAGCAACAGCAAATTGTTACACGAACGCATGTTCTTCTGCTTCAGACATTGTATTTTGCTGATCGAAAGAAAACAGAGGCAGCAATTTGTCAGCTTCTTGTTGGGTTGAATTATATATGCCGTTATGAGCATCAGCAGAATGCATTATTGGATTGTGCAAGTAGTTTTGATTTTGAAGACTGCATGGAGTGGCAAATGCAATGTGGAGCTTCTTTTGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

594

Amino Acids

66.51

Weight (kDa)

8.15

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3475 PF11961 50 - 106 7.8e-25 Domain of unknown function (DUF3475)
DUF668 PF05003 424 - 513 6.4e-34 Protein of unknown function (DUF668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23160
fragaria_vesca FvH4_4g03090
malus_domestica MD13G1210100.v1.1 MD16G1213000.v1.1
prunus_persica Prupe.1G034600_v2.0.a1
pyrus_communis pycom13g18270 pycom16g17890
rosa_chinensis RchiOBHm_Chr4g0391361
rosa_laevigata RLG00000009869
rosa_multiflora Rmu_sc0005322.1_g000036
rosa_roxburghii Rroxscaffold_5G00337110
rosa_rugosa Rorug03G0335700
rosa_samantha Rh4AG036800 Rh4BG031500 Rh4CG040100 Rh4DG034500
rosa_wichuraiana Rw4G002890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1220
AccB7I CCANNNNNTGG 1 cut(s) 268
AccBSI CCGCTC 1 cut(s) 1096
AciI CCGC 2 cut(s) 344, 1096
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 2 cut(s) 566, 1441
AcuI CTGAAG 2 cut(s) 56, 1586
AfaI GTAC 1 cut(s) 715
AfiI CCNNNNNNNGG 5 cut(s) 268, 334, 586, 809, 1242
AjnI CCWGG 4 cut(s) 36, 353, 837, 1012
AjuI GAANNNNNNNTTGG 2 cut(s) 1691, 1723
Alw26I GTCTC 4 cut(s) 277, 741, 1413, 1478
AlwNI CAGNNNCTG 2 cut(s) 215, 616
AoxI GGCC 2 cut(s) 351, 887
ApeKI GCWGC 2 cut(s) 341, 1640
ApoI RAATTY 2 cut(s) 566, 1441
AspS9I GGNCC 5 cut(s) 259, 325, 766, 887, 1232
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 5 cut(s) 422, 469, 922, 971, 1367
AvaII GGWCC 4 cut(s) 259, 325, 766, 1232
BaeGI GKGCMC 1 cut(s) 1225
BalI TGGCCA 1 cut(s) 353
BanI GGYRCC 1 cut(s) 1220
BarI GAAGNNNNNNTAC 2 cut(s) 1093, 1125
BbsI GAAGAC 1 cut(s) 1743
BbvI GCAGC 2 cut(s) 328, 1652
BccI CCATC 4 cut(s) 22, 1243, 1487, 1533
BceAI ACGGC 1 cut(s) 1665
BciT130I CCWGG 4 cut(s) 38, 355, 839, 1014
BciVI GTATCC 1 cut(s) 1079
BclI TGATCA 1 cut(s) 1533
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 4 cut(s) 277, 741, 1413, 1478
BfaI CTAG 6 cut(s) 320, 1008, 1037, 1289, 1349, 1365
BfmI CTRYAG 2 cut(s) 141, 386
BfuI GTATCC 1 cut(s) 1079
BglI GCCNNNNNGGC 1 cut(s) 1520
BglII AGATCT 2 cut(s) 219, 240
BisI GCNGC 2 cut(s) 342, 1641
BlsI GCNGC 2 cut(s) 343, 1642
Bme1390I CCNGG 5 cut(s) 38, 335, 355, 839, 1014
Bme18I GGWCC 4 cut(s) 259, 325, 766, 1232
BmgT120I GGNCC 5 cut(s) 259, 325, 766, 887, 1232
BmiI GGNNCC 7 cut(s) 260, 668, 767, 843, 888, 1222, 1234
BmrFI CCNGG 5 cut(s) 38, 335, 355, 839, 1014
BmsI GCATC 4 cut(s) 652, 811, 1447, 1699
BpiI GAAGAC 1 cut(s) 1743
BpuEI CTTGAG 3 cut(s) 317, 632, 1409
BpuMI CCSGG 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 1377
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 4 cut(s) 769, 837, 1012, 1013
BsaWI WCCGGW 1 cut(s) 1205
BsaXI ACNNNNNCTCC 4 cut(s) 434, 464, 943, 973
Bsc4I CCNNNNNNNGG 5 cut(s) 268, 334, 586, 809, 1242
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 1524
Bse3DI GCAATG 1 cut(s) 1766
Bse8I GATNNNNATC 1 cut(s) 1377
BseBI CCWGG 4 cut(s) 38, 355, 839, 1014
BseDI CCNNGG 4 cut(s) 769, 837, 1012, 1013
BseJI GATNNNNATC 1 cut(s) 1377
BseLI CCNNNNNNNGG 5 cut(s) 268, 334, 586, 809, 1242
BseMI GCAATG 1 cut(s) 1766
BseMII CTCAG 5 cut(s) 207, 243, 303, 950, 1426
BseNI ACTGG 1 cut(s) 1524
BseRI GAGGAG 5 cut(s) 602, 841, 969, 1106, 1156
BseSI GKGCMC 1 cut(s) 1225
BseXI GCAGC 2 cut(s) 328, 1652
BshFI GGCC 2 cut(s) 353, 889
BshNI GGYRCC 1 cut(s) 1220
BsiSI CCGG 3 cut(s) 334, 380, 1206
BslFI GGGAC 4 cut(s) 187, 779, 1218, 1382
BslI CCNNNNNNNGG 5 cut(s) 268, 334, 586, 809, 1242
BsmAI GTCTC 4 cut(s) 277, 741, 1413, 1478
BsmFI GGGAC 4 cut(s) 187, 779, 1218, 1382
BsmI GAATGC 3 cut(s) 76, 508, 1705
BsnI GGCC 2 cut(s) 353, 889
Bso31I GGTCTC 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 1225
Bsp143I GATC 4 cut(s) 219, 240, 1533, 1621
Bsp19I CCATGG 1 cut(s) 769
BspACI CCGC 2 cut(s) 344, 1096
BspANI GGCC 2 cut(s) 353, 889
BspCNI CTCAG 5 cut(s) 208, 244, 304, 949, 1425
BspHI TCATGA 1 cut(s) 1471
BspLI GGNNCC 7 cut(s) 260, 668, 767, 843, 888, 1222, 1234
BspMAI CTGCAG 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 1220
BspTNI GGTCTC 1 cut(s) 277
BsrBI CCGCTC 1 cut(s) 1096
BsrDI GCAATG 1 cut(s) 1766
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 1 cut(s) 1524
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 4 cut(s) 769, 837, 1012, 1013
BssMI GATC 4 cut(s) 219, 240, 1533, 1621
BssT1I CCWWGG 1 cut(s) 769
Bst2UI CCWGG 4 cut(s) 38, 355, 839, 1014
Bst4CI ACNGT 5 cut(s) 187, 709, 1076, 1273, 1407
Bst6I CTCTTC 2 cut(s) 280, 845
BstAPI GCANNNNNTGC 1 cut(s) 1466
BstC8I GCNNGC 5 cut(s) 60, 303, 381, 555, 1512
BstDEI CTNAG 7 cut(s) 216, 225, 252, 312, 860, 936, 1412
BstDSI CCRYGG 1 cut(s) 769
BstEII GGTNACC 2 cut(s) 32, 410
BstKTI GATC 4 cut(s) 222, 243, 1536, 1624
BstMAI GTCTC 4 cut(s) 277, 741, 1413, 1478
BstMBI GATC 4 cut(s) 219, 240, 1533, 1621
BstMWI GCNNNNNNNGC 7 cut(s) 350, 385, 622, 1041, 1466, 1520, 1549
BstNI CCWGG 4 cut(s) 38, 355, 839, 1014
BstNSI RCATGY 2 cut(s) 404, 1592
BstPI GGTNACC 2 cut(s) 32, 410
BstSCI CCNGG 5 cut(s) 36, 333, 353, 837, 1012
BstSFI CTRYAG 2 cut(s) 141, 386
BstSLI GKGCMC 1 cut(s) 1225
BstV1I GCAGC 2 cut(s) 328, 1652
BstV2I GAAGAC 1 cut(s) 1743
BstX2I RGATCY 2 cut(s) 219, 240
BstYI RGATCY 2 cut(s) 219, 240
BsuI GTATCC 1 cut(s) 1079
BsuRI GGCC 2 cut(s) 353, 889
BtgI CCRYGG 1 cut(s) 769
BtsIMutI CAGTG 2 cut(s) 1081, 1517
Cac8I GCNNGC 5 cut(s) 60, 303, 381, 555, 1512
CaiI CAGNNNCTG 2 cut(s) 215, 616
CciI TCATGA 1 cut(s) 1471
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 5 cut(s) 259, 325, 766, 887, 1232
CsiI ACCWGGT 1 cut(s) 36
Csp6I GTAC 1 cut(s) 714
CviAII CATG 8 cut(s) 401, 584, 770, 1027, 1472, 1531, 1589, 1744
CviQI GTAC 1 cut(s) 714
DdeI CTNAG 7 cut(s) 216, 225, 252, 312, 860, 936, 1412
DpnI GATC 4 cut(s) 221, 242, 1535, 1623
DpnII GATC 4 cut(s) 219, 240, 1533, 1621
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 280, 845
EarI CTCTTC 2 cut(s) 280, 845
Eco130I CCWWGG 1 cut(s) 769
Eco31I GGTCTC 1 cut(s) 277
Eco47I GGWCC 4 cut(s) 259, 325, 766, 1232
Eco57I CTGAAG 2 cut(s) 56, 1586
Eco91I GGTNACC 2 cut(s) 32, 410
EcoO109I RGGNCCY 1 cut(s) 325
EcoO65I GGTNACC 2 cut(s) 32, 410
EcoRII CCWGG 4 cut(s) 36, 353, 837, 1012
EcoT14I CCWWGG 1 cut(s) 769
EcoT22I ATGCAT 1 cut(s) 1705
ErhI CCWWGG 1 cut(s) 769
FaeI CATG 8 cut(s) 404, 587, 773, 1030, 1475, 1534, 1592, 1747
FaqI GGGAC 4 cut(s) 187, 779, 1218, 1382
FatI CATG 8 cut(s) 400, 583, 769, 1026, 1471, 1530, 1588, 1743
FauI CCCGC 1 cut(s) 1089
FauNDI CATATG 1 cut(s) 1383
FbaI TGATCA 1 cut(s) 1533
Fnu4HI GCNGC 2 cut(s) 342, 1641
Fsp4HI GCNGC 2 cut(s) 342, 1641
FspBI CTAG 6 cut(s) 320, 1008, 1037, 1289, 1349, 1365
GluI GCNGC 2 cut(s) 342, 1641
HaeIII GGCC 2 cut(s) 353, 889
HapII CCGG 3 cut(s) 334, 380, 1206
Hin1II CATG 8 cut(s) 404, 587, 773, 1030, 1475, 1534, 1592, 1747
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 7 cut(s) 49, 148, 212, 730, 749, 944, 1486
HpaII CCGG 3 cut(s) 334, 380, 1206
HphI GGTGA 5 cut(s) 422, 469, 922, 971, 1367
Hpy166II GTNNAC 1 cut(s) 1072
Hpy188I TCNGA 8 cut(s) 217, 253, 280, 573, 746, 816, 1538, 1605
Hpy188III TCNNGA 7 cut(s) 244, 262, 296, 1414, 1438, 1472, 1490
Hpy8I GTNNAC 1 cut(s) 1072
HpyAV CCTTC 4 cut(s) 454, 807, 1275, 1474
HpyCH4III ACNGT 5 cut(s) 187, 709, 1076, 1273, 1407
HpyF10VI GCNNNNNNNGC 7 cut(s) 350, 385, 622, 1041, 1466, 1520, 1549
HpyF3I CTNAG 7 cut(s) 216, 225, 252, 312, 860, 936, 1412
Hsp92II CATG 8 cut(s) 404, 587, 773, 1030, 1475, 1534, 1592, 1747
KroI GCCGGC 1 cut(s) 379
KroNI GCCGGC 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 1533
Kzo9I GATC 4 cut(s) 219, 240, 1533, 1621
LmnI GCTCC 5 cut(s) 550, 841, 1093, 1264, 1766
Lsp1109I GCAGC 2 cut(s) 328, 1652
LweI GCATC 4 cut(s) 652, 811, 1447, 1699
MabI ACCWGGT 1 cut(s) 36
MaeI CTAG 6 cut(s) 320, 1008, 1037, 1289, 1349, 1365
MaeIII GTNAC 3 cut(s) 32, 410, 1576
MalI GATC 4 cut(s) 221, 242, 1535, 1623
MbiI CCGCTC 1 cut(s) 1096
MboI GATC 4 cut(s) 219, 240, 1533, 1621
MboII GAAGA 6 cut(s) 37, 267, 284, 862, 1586, 1748
MfeI CAATTG 1 cut(s) 780
MflI RGATCY 2 cut(s) 219, 240
MhlI GDGCHC 1 cut(s) 1225
MlsI TGGCCA 1 cut(s) 353
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 3 cut(s) 206, 743, 1480
MmeI TCCRAC 3 cut(s) 141, 468, 528
Mox20I TGGCCA 1 cut(s) 353
Mph1103I ATGCAT 1 cut(s) 1705
MroNI GCCGGC 1 cut(s) 379
MscI TGGCCA 1 cut(s) 353
MseI TTAA 4 cut(s) 231, 420, 930, 1400
MslI CAYNNNNRTG 1 cut(s) 405
Msp20I TGGCCA 1 cut(s) 353
MspI CCGG 3 cut(s) 334, 380, 1206
MspR9I CCNGG 5 cut(s) 38, 335, 355, 839, 1014
MunI CAATTG 1 cut(s) 780
Mva1269I GAATGC 3 cut(s) 76, 508, 1705
MvaI CCWGG 4 cut(s) 38, 355, 839, 1014
MwoI GCNNNNNNNGC 7 cut(s) 350, 385, 622, 1041, 1466, 1520, 1549
NaeI GCCGGC 1 cut(s) 381
NciI CCSGG 1 cut(s) 335
NcoI CCATGG 1 cut(s) 769
NdeI CATATG 1 cut(s) 1383
NdeII GATC 4 cut(s) 219, 240, 1533, 1621
NgoMIV GCCGGC 1 cut(s) 379
NlaIII CATG 8 cut(s) 404, 587, 773, 1030, 1475, 1534, 1592, 1747
NlaIV GGNNCC 7 cut(s) 260, 668, 767, 843, 888, 1222, 1234
NmeAIII GCCGAG 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 410
NsiI ATGCAT 1 cut(s) 1705
NspI RCATGY 2 cut(s) 404, 1592
PagI TCATGA 1 cut(s) 1471
PasI CCCWGGG 1 cut(s) 1013
PctI GAATGC 3 cut(s) 76, 508, 1705
PdiI GCCGGC 1 cut(s) 381
PfeI GAWTC 4 cut(s) 49, 148, 730, 944
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 2 cut(s) 343, 1642
PleI GAGTC 3 cut(s) 206, 743, 1480
PpsI GAGTC 3 cut(s) 206, 743, 1480
PpuMI RGGWCCY 1 cut(s) 325
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 4 cut(s) 36, 353, 837, 1012
PspEI GGTNACC 2 cut(s) 32, 410
PspGI CCWGG 4 cut(s) 36, 353, 837, 1012
PspN4I GGNNCC 7 cut(s) 260, 668, 767, 843, 888, 1222, 1234
PspPI GGNCC 5 cut(s) 259, 325, 766, 887, 1232
PspPPI RGGWCCY 1 cut(s) 325
PstI CTGCAG 1 cut(s) 390
PstNI CAGNNNCTG 2 cut(s) 215, 616
PsuI RGATCY 2 cut(s) 219, 240
RsaI GTAC 1 cut(s) 715
RsaNI GTAC 1 cut(s) 714
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 4 cut(s) 231, 420, 930, 1400
SatI GCNGC 2 cut(s) 342, 1641
Sau3AI GATC 4 cut(s) 219, 240, 1533, 1621
Sau96I GGNCC 5 cut(s) 259, 325, 766, 887, 1232
SchI GAGTC 3 cut(s) 206, 743, 1480
ScrFI CCNGG 5 cut(s) 38, 335, 355, 839, 1014
SduI GDGCHC 1 cut(s) 1225
SexAI ACCWGGT 1 cut(s) 36
SfaNI GCATC 4 cut(s) 652, 811, 1447, 1699
SfcI CTRYAG 2 cut(s) 141, 386
SinI GGWCC 4 cut(s) 259, 325, 766, 1232
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 3 cut(s) 296, 647, 1424
SmoI CTYRAG 3 cut(s) 296, 647, 1424
SsiI CCGC 2 cut(s) 344, 1096
SspMI CTAG 6 cut(s) 320, 1008, 1037, 1289, 1349, 1365
StyD4I CCNGG 5 cut(s) 36, 333, 353, 837, 1012
StyI CCWWGG 1 cut(s) 769
TaaI ACNGT 5 cut(s) 187, 709, 1076, 1273, 1407
TaqI TCGA 2 cut(s) 47, 1624
TfiI GAWTC 4 cut(s) 49, 148, 730, 944
Tru1I TTAA 4 cut(s) 231, 420, 930, 1400
Tru9I TTAA 4 cut(s) 231, 420, 930, 1400
TscAI CASTG 2 cut(s) 1081, 1524
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 2 cut(s) 341, 1640
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 4 cut(s) 144, 869, 1015, 1229
TspRI CASTG 2 cut(s) 1081, 1524
Van91I CCANNNNNTGG 1 cut(s) 268
VpaK11BI GGWCC 4 cut(s) 259, 325, 766, 1232
XapI RAATTY 2 cut(s) 566, 1441
XceI RCATGY 2 cut(s) 404, 1592
XspI CTAG 6 cut(s) 320, 1008, 1037, 1289, 1349, 1365
Zsp2I ATGCAT 1 cut(s) 1705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.