Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008688

Physical Location & Seq

Genomic Coordinates Forward (+)

3859529 .. 3871581

Gene Structure 12053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04520.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGAACTGCTCAATCTCCGGTGAGGTGCCAGAAGAGCCCGTGGTCTCTAAGAAGTCCGGCCTGCTCTTCGAGAAGCGTTTGATAGAGCGACACATCTCGGAATATGGAAAATGCCCAGTCACCGGCGAAGCGCTCACTGCTGATGATATTGTTCCGGTTAAAACCGGCAAGATAGTGAGGCCCAGACCTGTACAAGCTGCTAGCATCCCTGGCATGCTCGGAATGTTTCAGAATGAATGGGATAGTTTGATGCTGTCCAATTTTGCTATGGAGAAACAACTACATACAGCAAGGCAAGAGTTAAGTCACGCTTTGTATCAGCATGATGCTGCTTGCCGTGTTATTGCAAGACTCAAAAAGGAGAGGGACGAAGCAAGATCATTACTTGCTCAGGCAGACAGACAAATTCCCATGTCAACCCCGGCCGCTGTTGTAGGGAACGCTCCTGTCCATAGCAATGGAACACAAGTTGCTAATGACAATTTGGGACCTGGTGTGAGGAATATGCACCCTGGGATATCCCCCAGTATCCTGGCTGAGCTGACAGATTGTAATACAGCACTATCACAGCAGCGAAAGAAGCGACAGATATCCTCCACTTTGGCTCCTATTGATGCTTTGGAGAGGTATACTCAGATATCCAGTCATCCTCTCCATAAAACAAGCAAGCCAGGAATTTTGTCGATTGATATTCATCATGAAAGGGACATCATTGCAACTGGAGGGGTTGACACAAATGCTGTAATCTTTGATCAACCGTCTGGCCAAATTTTATCTACTCTTGGTGGTCATTCAAAGAAGGTTACCAGCGTTAAATTTGTAGGTCGTGATAATCTGGTCATAACTGGGTCGGCAGACAAGACAGTTCGCATATGGCAAGGCTCTGATGATGGAGACTACCACTGTAACCACACTTTGAAGGATCATACAGCTGAGGTGCAAGCTGTTACTGTTCATGCCACAAATAACTACTTCGTGACTGCATCTCTTGATAGTACATGGTGCTTTTACGATATTACCTCTGGGTTATGTCTGACACAGGTTGAGGATACTTCAGCGTCTCAGGGTTACACATCTGTGGCCTTTCATCCTGATGGTCTCATCCTTGGAGCAGGTACCTCAGAGGCTGTTGTCAAGATCTGGGATGTCAAAAGTCAGACACGGGTTGCAAAGTTTGATGGACATGTTGGGGCAGTAACTTCCATCTCCTTCTCTGAAAATGGTTACTTTCTGGCGACTGCTGCTAGTGATGGTGTTAAACTCTGGGATCTGCGCAAATTAAAGAACTTCAGGACATTTACTCCATATGGTCCTGATACGCCAACAAACTCTGTTGAATTTGACTTCAGTGGGAGTTACCTTGCAGCTGCTGGCTCTGATATAAGAGTCATCCAAGCTACTAGTGTCAAACAAGAATGGAACACTATCAAAACTTTCCCTGATATGTCTGGCACAGGTAAAGCAACTAGCGTAAAGTTTGGCCCGGATGCCAAATATATTGCAGTAGGATCAATGGATCGAAATCTACGGATTTTTGGCTTGCCTGGCAAGGATGTTGAGATGGAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022607 GO:0022613 GO:0022618 GO:0030312 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0034622 GO:0034641 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0065003 GO:0070013 GO:0070534 GO:0070647 GO:0071006 GO:0071012 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080008 GO:0090304 GO:0098542 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04120 map03040 map04120

Pfam Domains

Protein Families

Prp19 U-box WD40

Protein Analysis

524

Amino Acids

56.75

Weight (kDa)

6.5

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prp19	PF08606	66 - 131	1.7e-30	Prp19/Pso4-like
WD40_Prp19	PF24814	218 - 506	2.6e-107	Prp19 WD40 domain
Beta-prop_DCAF12	PF23760	218 - 298	7.4e-06	DDB1- and CUL4-associated factor 12 beta propeller
Beta-prop_WDR5	PF25175	221 - 366	4.7e-24	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	224 - 348	9.5e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	224 - 339	7.5e-20	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	225 - 340	3.6e-13	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	225 - 388	2.3e-14	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	226 - 303	2.9e-08	WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	226 - 293	1e-07	MABP1/WDR62 second WD40 domain
Beta-prop_EML	PF23409	226 - 423	2e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR19_1st	PF23389	234 - 457	2.6e-08	WDR19 first beta-propeller
WD40	PF00400	256 - 292	1.5e-08	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	258 - 352	2.9e-07	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	261 - 353	2.7e-07	EIF3I
Beta-prop_THOC3	PF25174	264 - 512	4.4e-39	THOC3 beta-propeller domain
WDR55	PF24796	266 - 425	1.6e-13	WDR55
Beta-prop_TEP1_2nd	PF25047	299 - 427	5.2e-08	TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	302 - 422	4.8e-07	MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	307 - 459	1e-15	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	314 - 424	3.4e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	319 - 419	1.7e-10	WDR90/POC16, second beta-propeller
WD40_CDC20-Fz	PF24807	329 - 463	6.5e-11	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	355 - 513	1.2e-15	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	355 - 512	1.6e-19	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	357 - 422	6.1e-06	WDR3 second beta-propeller domain
EIF3I	PF24805	358 - 512	3.8e-09	EIF3I
Beta-prop_WDR3_1st	PF25173	358 - 461	9.1e-15	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	373 - 511	6e-08	G protein beta WD-40 repeat protein
WD40	PF00400	388 - 423	6e-06	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	398 - 512	4.7e-06	CDC20/Fizzy WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04510 AT1G04510 AT2G33340 AT2G33340 AT2G33340
fragaria_vesca	FvH4_4g04520 FvH4_4g04520
malus_domestica	MD13G1220800.v1.1 MD16G1225900.v1.1
prunus_persica	Prupe.1G047500_v2.0.a1
pyrus_communis	pycom13g19530 pycom16g18900
rosa_chinensis	RchiOBHm_Chr4g0395291
rosa_laevigata	RLG00000009634
rosa_multiflora	Rmu_sc0015296.1_g000001 Rmu_sc0032966.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340170
rosa_rugosa	Rorug03G0358300
rosa_samantha	Rh4AG058200 Rh4BG057000 Rh4CG062800 Rh4DG053700
rosa_wichuraiana	Rw4G004680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1274
Acc36I	ACCTGC	1 cut(s)	1103
Acc65I	GGTACC	1 cut(s)	1115
AccB1I	GGYRCC	2 cut(s)	25, 1115
AccI	GTMKAC	1 cut(s)	629
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	4 cut(s)	930, 1275, 1516, 1524
AcoI	YGGCCR	2 cut(s)	423, 763
AcsI	RAATTY	5 cut(s)	405, 675, 768, 815, 1337
AcuI	CTGAAG	3 cut(s)	1038, 1273, 1330
AfaI	GTAC	3 cut(s)	192, 997, 1117
AfeI	AGCGCT	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	1183
AgsI	TTSAA	3 cut(s)	795, 919, 1337
AhlI	ACTAGT	1 cut(s)	1400
AjnI	CCWGG	6 cut(s)	208, 490, 511, 531, 670, 1543
AleI	CACNNNNGTG	1 cut(s)	1076
AluBI	AGCT	6 cut(s)	197, 541, 932, 944, 1367, 1397
AluI	AGCT	6 cut(s)	197, 541, 932, 944, 1367, 1397
Alw26I	GTCTC	4 cut(s)	49, 888, 1065, 1103
AlwI	GGATC	4 cut(s)	930, 1275, 1516, 1524
AlwNI	CAGNNNCTG	2 cut(s)	1127, 1370
Aor51HI	AGCGCT	1 cut(s)	132
AoxI	GGCC	6 cut(s)	58, 179, 423, 763, 1080, 1480
ApeKI	GCWGC	6 cut(s)	197, 329, 571, 1241, 1364, 1367
ApoI	RAATTY	5 cut(s)	405, 675, 768, 815, 1337
Asp718I	GGTACC	1 cut(s)	1115
AspLEI	GCGC	2 cut(s)	133, 1275
AspS9I	GGNCC	4 cut(s)	180, 488, 1310, 1481
AsuC2I	CCSGG	2 cut(s)	422, 1484
AsuHPI	GGTGA	2 cut(s)	32, 112
AsuNHI	GCTAGC	1 cut(s)	200
AvaII	GGWCC	2 cut(s)	488, 1310
BalI	TGGCCA	1 cut(s)	765
BanI	GGYRCC	2 cut(s)	25, 1115
BanII	GRGCYC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	933
BbvI	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
BccI	CCATC	6 cut(s)	884, 1088, 1172, 1211, 1244, 1555
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	6 cut(s)	210, 492, 513, 533, 672, 1545
BciVI	GTATCC	2 cut(s)	539, 1042
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	2 cut(s)	422, 1484
BcoDI	GTCTC	4 cut(s)	49, 888, 1065, 1103
BcuI	ACTAGT	1 cut(s)	1400
BfaI	CTAG	4 cut(s)	201, 1245, 1401, 1467
BfoI	RGCGCY	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	1103
BfuI	GTATCC	2 cut(s)	539, 1042
BglII	AGATCT	1 cut(s)	1137
BisI	GCNGC	7 cut(s)	198, 330, 426, 572, 1242, 1365, 1368
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	7 cut(s)	199, 331, 427, 573, 1243, 1366, 1369
Bme1390I	CCNGG	8 cut(s)	210, 422, 492, 513, 533, 672, 1484, 1545
Bme18I	GGWCC	2 cut(s)	488, 1310
BmgT120I	GGNCC	4 cut(s)	180, 488, 1310, 1481
BmiI	GGNNCC	4 cut(s)	27, 489, 606, 1117
BmrFI	CCNGG	8 cut(s)	210, 422, 492, 513, 533, 672, 1484, 1545
BmrI	ACTGGG	3 cut(s)	110, 519, 855
BmsI	GCATC	6 cut(s)	213, 240, 316, 604, 992, 1477
BmtI	GCTAGC	1 cut(s)	204
BmuI	ACTGGG	3 cut(s)	110, 519, 855
BplI	GAGNNNNNCTC	2 cut(s)	616, 648
BpmI	CTGGAG	1 cut(s)	741
Bpu10I	CCTNAGC	2 cut(s)	390, 933
Bpu1102I	GCTNAGC	1 cut(s)	537
BpuMI	CCSGG	2 cut(s)	422, 1484
BsaBI	GATNNNNATC	2 cut(s)	693, 1521
BsaI	GGTCTC	2 cut(s)	49, 1103
BsaJI	CCNNGG	6 cut(s)	39, 208, 420, 511, 512, 1105
BsaWI	WCCGGW	2 cut(s)	17, 154
BsaXI	ACNNNNNCTCC	4 cut(s)	589, 619, 1285, 1315
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse118I	RCCGGY	2 cut(s)	122, 164
Bse1I	ACTGG	5 cut(s)	116, 525, 642, 724, 850
Bse3DI	GCAATG	2 cut(s)	463, 711
Bse8I	GATNNNNATC	2 cut(s)	693, 1521
BseBI	CCWGG	6 cut(s)	210, 492, 513, 533, 672, 1545
BseDI	CCNNGG	6 cut(s)	39, 208, 420, 511, 512, 1105
BseGI	GGATG	8 cut(s)	204, 646, 1087, 1101, 1150, 1389, 1492, 1558
BseJI	GATNNNNATC	2 cut(s)	693, 1521
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	2 cut(s)	463, 711
BseMII	CTCAG	6 cut(s)	404, 528, 647, 924, 1076, 1134
BseNI	ACTGG	5 cut(s)	116, 525, 642, 724, 850
BseX3I	CGGCCG	1 cut(s)	423
BseXI	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	6 cut(s)	60, 181, 425, 765, 1082, 1482
BshNI	GGYRCC	2 cut(s)	25, 1115
BsiEI	CGRYCG	1 cut(s)	426
BsiSI	CCGG	7 cut(s)	18, 57, 123, 155, 165, 422, 1484
BslFI	GGGAC	3 cut(s)	380, 501, 719
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	4 cut(s)	49, 888, 1065, 1103
BsmBI	CGTCTC	1 cut(s)	1065
BsmFI	GGGAC	3 cut(s)	380, 501, 719
BsnI	GGCC	6 cut(s)	60, 181, 425, 765, 1082, 1482
Bso31I	GGTCTC	2 cut(s)	49, 1103
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	7 cut(s)	377, 751, 922, 1137, 1267, 1508, 1516
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	1 cut(s)	426
BspANI	GGCC	6 cut(s)	60, 181, 425, 765, 1082, 1482
BspCNI	CTCAG	6 cut(s)	403, 529, 646, 925, 1075, 1133
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	4 cut(s)	27, 489, 606, 1117
BspMI	ACCTGC	1 cut(s)	1103
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	4 cut(s)	930, 1275, 1516, 1524
BspQI	GCTCTTC	2 cut(s)	27, 71
BspT107I	GGYRCC	2 cut(s)	25, 1115
BspTNI	GGTCTC	2 cut(s)	49, 1103
BsrDI	GCAATG	2 cut(s)	463, 711
BsrFI	RCCGGY	2 cut(s)	122, 164
BsrGI	TGTACA	1 cut(s)	190
BsrI	ACTGG	5 cut(s)	116, 525, 642, 724, 850
BssAI	RCCGGY	2 cut(s)	122, 164
BssECI	CCNNGG	6 cut(s)	39, 208, 420, 511, 512, 1105
BssMI	GATC	7 cut(s)	377, 751, 922, 1137, 1267, 1508, 1516
BssNAI	GTATAC	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	1105
Bst1107I	GTATAC	1 cut(s)	630
Bst2UI	CCWGG	6 cut(s)	210, 492, 513, 533, 672, 1545
Bst4CI	ACNGT	4 cut(s)	759, 865, 905, 952
Bst6I	CTCTTC	2 cut(s)	27, 71
BstAUI	TGTACA	1 cut(s)	190
BstC8I	GCNNGC	8 cut(s)	62, 202, 215, 334, 668, 942, 1372, 1541
BstDEI	CTNAG	7 cut(s)	48, 390, 537, 633, 933, 1062, 1120
BstDSI	CCRYGG	1 cut(s)	39
BstEII	GGTNACC	1 cut(s)	802
BstF5I	GGATG	8 cut(s)	204, 646, 1087, 1101, 1150, 1389, 1492, 1558
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	2 cut(s)	133, 1275
BstKTI	GATC	7 cut(s)	380, 754, 925, 1140, 1270, 1511, 1519
BstMAI	GTCTC	4 cut(s)	49, 888, 1065, 1103
BstMBI	GATC	7 cut(s)	377, 751, 922, 1137, 1267, 1508, 1516
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 137, 210, 580, 1241, 1545
BstNI	CCWGG	6 cut(s)	210, 492, 513, 533, 672, 1545
BstNSI	RCATGY	2 cut(s)	217, 1187
BstPI	GGTNACC	1 cut(s)	802
BstSCI	CCNGG	8 cut(s)	208, 420, 490, 511, 531, 670, 1482, 1543
BstV1I	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
BstX2I	RGATCY	2 cut(s)	1137, 1267
BstXI	CCANNNNNNTGG	2 cut(s)	458, 532
BstYI	RGATCY	2 cut(s)	1137, 1267
BstZ17I	GTATAC	1 cut(s)	630
BstZI	CGGCCG	1 cut(s)	423
BsuI	GTATCC	2 cut(s)	539, 1042
BsuRI	GGCC	6 cut(s)	60, 181, 425, 765, 1082, 1482
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	8 cut(s)	204, 646, 1087, 1101, 1150, 1389, 1492, 1558
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	3 cut(s)	135, 901, 1354
BveI	ACCTGC	1 cut(s)	1103
Cac8I	GCNNGC	8 cut(s)	62, 202, 215, 334, 668, 942, 1372, 1541
CaiI	CAGNNNCTG	2 cut(s)	1127, 1370
CciI	TCATGA	1 cut(s)	697
CfoI	GCGC	2 cut(s)	133, 1275
Cfr10I	RCCGGY	2 cut(s)	122, 164
Cfr13I	GGNCC	4 cut(s)	180, 488, 1310, 1481
CseI	GACGC	1 cut(s)	1047
CsiI	ACCWGGT	1 cut(s)	490
Csp6I	GTAC	3 cut(s)	191, 996, 1116
CviAII	CATG	7 cut(s)	214, 323, 412, 698, 956, 999, 1184
CviQI	GTAC	3 cut(s)	191, 996, 1116
DdeI	CTNAG	7 cut(s)	48, 390, 537, 633, 933, 1062, 1120
DpnI	GATC	7 cut(s)	379, 753, 924, 1139, 1269, 1510, 1518
DpnII	GATC	7 cut(s)	377, 751, 922, 1137, 1267, 1508, 1516
EaeI	YGGCCR	2 cut(s)	423, 763
EagI	CGGCCG	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	27, 71
EarI	CTCTTC	2 cut(s)	27, 71
EclXI	CGGCCG	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	1105
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	2 cut(s)	49, 1103
Eco32I	GATATC	3 cut(s)	519, 591, 639
Eco47I	GGWCC	2 cut(s)	488, 1310
Eco47III	AGCGCT	1 cut(s)	132
Eco52I	CGGCCG	1 cut(s)	423
Eco57I	CTGAAG	3 cut(s)	1038, 1273, 1330
Eco91I	GGTNACC	1 cut(s)	802
EcoO109I	RGGNCCY	1 cut(s)	488
EcoO65I	GGTNACC	1 cut(s)	802
EcoRII	CCWGG	6 cut(s)	208, 490, 511, 531, 670, 1543
EcoRV	GATATC	3 cut(s)	519, 591, 639
EcoT14I	CCWWGG	1 cut(s)	1105
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	1105
Esp3I	CGTCTC	1 cut(s)	1065
FaeI	CATG	7 cut(s)	217, 326, 415, 701, 959, 1002, 1187
FalI	AAGNNNNNCTT	2 cut(s)	295, 327
FaqI	GGGAC	3 cut(s)	380, 501, 719
FatI	CATG	7 cut(s)	213, 322, 411, 697, 955, 998, 1183
FauNDI	CATATG	2 cut(s)	872, 1306
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	7 cut(s)	198, 330, 426, 572, 1242, 1365, 1368
FokI	GGATG	8 cut(s)	191, 633, 1074, 1088, 1157, 1376, 1499, 1565
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	7 cut(s)	198, 330, 426, 572, 1242, 1365, 1368
FspBI	CTAG	4 cut(s)	201, 1245, 1401, 1467
FspI	TGCGCA	1 cut(s)	1274
GlaI	GCGC	2 cut(s)	132, 1274
GluI	GCNGC	7 cut(s)	198, 330, 426, 572, 1242, 1365, 1368
GsuI	CTGGAG	1 cut(s)	741
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	6 cut(s)	60, 181, 425, 765, 1082, 1482
HapII	CCGG	7 cut(s)	18, 57, 123, 155, 165, 422, 1484
HgaI	GACGC	1 cut(s)	1047
HhaI	GCGC	2 cut(s)	133, 1275
Hin1II	CATG	7 cut(s)	217, 326, 415, 701, 959, 1002, 1187
Hin6I	GCGC	2 cut(s)	131, 1273
HinP1I	GCGC	2 cut(s)	131, 1273
HincII	GTYRAC	2 cut(s)	417, 730
HindII	GTYRAC	2 cut(s)	417, 730
HinfI	GANTC	3 cut(s)	351, 1386, 1565
HpaII	CCGG	7 cut(s)	18, 57, 123, 155, 165, 422, 1484
HphI	GGTGA	2 cut(s)	32, 112
Hpy166II	GTNNAC	3 cut(s)	417, 630, 730
Hpy8I	GTNNAC	3 cut(s)	417, 630, 730
HpyAV	CCTTC	3 cut(s)	793, 913, 1219
HpyCH4III	ACNGT	4 cut(s)	759, 865, 905, 952
HpyCH4V	TGCA	8 cut(s)	347, 508, 716, 940, 983, 1169, 1364, 1502
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 137, 210, 580, 1241, 1545
HpyF3I	CTNAG	7 cut(s)	48, 390, 537, 633, 933, 1062, 1120
Hsp92II	CATG	7 cut(s)	217, 326, 415, 701, 959, 1002, 1187
HspAI	GCGC	2 cut(s)	131, 1273
KpnI	GGTACC	1 cut(s)	1119
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	7 cut(s)	377, 751, 922, 1137, 1267, 1508, 1516
LguI	GCTCTTC	2 cut(s)	27, 71
LmnI	GCTCC	3 cut(s)	448, 610, 1109
Lsp1109I	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
LweI	GCATC	6 cut(s)	213, 240, 316, 604, 992, 1477
MabI	ACCWGGT	1 cut(s)	490
MaeI	CTAG	4 cut(s)	201, 1245, 1401, 1467
MalI	GATC	7 cut(s)	379, 753, 924, 1139, 1269, 1510, 1518
MboI	GATC	7 cut(s)	377, 751, 922, 1137, 1267, 1508, 1516
MboII	GAAGA	2 cut(s)	44, 58
MflI	RGATCY	2 cut(s)	1137, 1267
MhlI	GDGCHC	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	765
MluCI	AATT	8 cut(s)	259, 405, 481, 675, 768, 815, 1277, 1337
MluNI	TGGCCA	1 cut(s)	765
MlyI	GAGTC	2 cut(s)	345, 1395
Mox20I	TGGCCA	1 cut(s)	765
MscI	TGGCCA	1 cut(s)	765
MseI	TTAA	5 cut(s)	159, 302, 813, 1257, 1280
MslI	CAYNNNNRTG	3 cut(s)	456, 1076, 1092
Msp20I	TGGCCA	1 cut(s)	765
MspA1I	CMGCKG	3 cut(s)	428, 932, 1367
MspI	CCGG	7 cut(s)	18, 57, 123, 155, 165, 422, 1484
MspR9I	CCNGG	8 cut(s)	210, 422, 492, 513, 533, 672, 1484, 1545
MvaI	CCWGG	6 cut(s)	210, 492, 513, 533, 672, 1545
MwoI	GCNNNNNNNGC	6 cut(s)	34, 137, 210, 580, 1241, 1545
NciI	CCSGG	2 cut(s)	422, 1484
NdeI	CATATG	2 cut(s)	872, 1306
NdeII	GATC	7 cut(s)	377, 751, 922, 1137, 1267, 1508, 1516
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	7 cut(s)	217, 326, 415, 701, 959, 1002, 1187
NlaIV	GGNNCC	4 cut(s)	27, 489, 606, 1117
NmuCI	GTSAC	3 cut(s)	118, 305, 976
NsbI	TGCGCA	1 cut(s)	1274
NspI	RCATGY	2 cut(s)	217, 1187
OliI	CACNNNNGTG	1 cut(s)	1076
PaeI	GCATGC	1 cut(s)	217
PagI	TCATGA	1 cut(s)	697
PasI	CCCWGGG	1 cut(s)	512
PciI	ACATGT	1 cut(s)	1183
PciSI	GCTCTTC	2 cut(s)	27, 71
PkrI	GCNGC	7 cut(s)	199, 331, 427, 573, 1243, 1366, 1369
PleI	GAGTC	2 cut(s)	345, 1394
PpsI	GAGTC	2 cut(s)	345, 1394
PpuMI	RGGWCCY	1 cut(s)	488
PscI	ACATGT	1 cut(s)	1183
Psp5II	RGGWCCY	1 cut(s)	488
Psp6I	CCWGG	6 cut(s)	208, 490, 511, 531, 670, 1543
PspEI	GGTNACC	1 cut(s)	802
PspGI	CCWGG	6 cut(s)	208, 490, 511, 531, 670, 1543
PspN4I	GGNNCC	4 cut(s)	27, 489, 606, 1117
PspPI	GGNCC	4 cut(s)	180, 488, 1310, 1481
PspPPI	RGGWCCY	1 cut(s)	488
PstNI	CAGNNNCTG	2 cut(s)	1127, 1370
PsuI	RGATCY	2 cut(s)	1137, 1267
PvuII	CAGCTG	2 cut(s)	932, 1367
RsaI	GTAC	3 cut(s)	192, 997, 1117
RsaNI	GTAC	3 cut(s)	191, 996, 1116
RseI	CAYNNNNRTG	3 cut(s)	456, 1076, 1092
SapI	GCTCTTC	2 cut(s)	27, 71
SaqAI	TTAA	5 cut(s)	159, 302, 813, 1257, 1280
SatI	GCNGC	7 cut(s)	198, 330, 426, 572, 1242, 1365, 1368
Sau3AI	GATC	7 cut(s)	377, 751, 922, 1137, 1267, 1508, 1516
Sau96I	GGNCC	4 cut(s)	180, 488, 1310, 1481
SchI	GAGTC	2 cut(s)	345, 1395
ScrFI	CCNGG	8 cut(s)	210, 422, 492, 513, 533, 672, 1484, 1545
SduI	GDGCHC	1 cut(s)	39
SexAI	ACCWGGT	1 cut(s)	490
SfaNI	GCATC	6 cut(s)	213, 240, 316, 604, 992, 1477
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	2 cut(s)	488, 1310
SmiMI	CAYNNNNRTG	3 cut(s)	456, 1076, 1092
SpeI	ACTAGT	1 cut(s)	1400
SphI	GCATGC	1 cut(s)	217
Sse9I	AATT	8 cut(s)	259, 405, 481, 675, 768, 815, 1277, 1337
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	4 cut(s)	201, 1245, 1401, 1467
StyD4I	CCNGG	8 cut(s)	208, 420, 490, 511, 531, 670, 1482, 1543
StyI	CCWWGG	1 cut(s)	1105
TaaI	ACNGT	4 cut(s)	759, 865, 905, 952
TaqI	TCGA	3 cut(s)	69, 683, 1519
TasI	AATT	8 cut(s)	259, 405, 481, 675, 768, 815, 1277, 1337
TatI	WGTACW	2 cut(s)	190, 995
TauI	GCSGC	1 cut(s)	428
Tru1I	TTAA	5 cut(s)	159, 302, 813, 1257, 1280
Tru9I	TTAA	5 cut(s)	159, 302, 813, 1257, 1280
TscAI	CASTG	3 cut(s)	142, 908, 1354
TseFI	GTSAC	3 cut(s)	118, 305, 976
TseI	GCWGC	6 cut(s)	197, 329, 571, 1241, 1364, 1367
Tsp45I	GTSAC	3 cut(s)	118, 305, 976
TspDTI	ATGAA	6 cut(s)	17, 249, 683, 714, 944, 1076
TspGWI	ACGGA	1 cut(s)	1543
TspRI	CASTG	3 cut(s)	142, 908, 1354
VpaK11BI	GGWCC	2 cut(s)	488, 1310
XapI	RAATTY	5 cut(s)	405, 675, 768, 815, 1337
XceI	RCATGY	2 cut(s)	217, 1187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	629
XspI	CTAG	4 cut(s)	201, 1245, 1401, 1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.