Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015296.1

Orthogroup ID

OG0008688

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4043

Gene Structure 4043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015296.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

aatacagcactatcacagcagcgaaagaagcgacagatatcctccacgttggctcctattgatgctttggagaggtatactcagatatccagtcatcctcttcataaaacaagcaaaccaggaattttgtcgatcgatattcatcatgagaaggacatcattgcaactggaggggttgatacaaatgctgtaatctttgatcaaccatcaggccaaattttatctactcttagtggtcattcaaagaaggttaccagcgttaaatttgtaggtcgcgataatctggtcataactgggtcggccgacaagacagttcgcatatggcaaggctctgatgatgggaattacaactgtaaccacactttgaaggatcatacagctgaggtgcaagctgttactgtacatgccacaaataactacttcgtgactgcatctcttgatagtacatggtgcttttacgatatttcctctgggttatgtctgacacaggttgaggatacttcagcatctcagggttacacatctgtggcctttcatcctgatggtctcatcctcggagcaggtacctcagaggctgttgtcaaaatttgggacgtaaagagtcagacaagggttgcaaagtttgatggacatgttggggcagtaacttccatctccttctccgaaaatggttactttctggcgaccgctgctagtgatggtgttaaactttgggatctgcgcaaattaaggaacttcaggacatttactccatatggtcctgatacgccaacaaactctgttgaatttgacttcagcgggagttaccttgcagctgcaggctccgatataagagtcttccaagctactagtgtcaaatcagaatggaacaccatcaaaactttccctgatatgtcaggcacaggtaaagcaactagtgtaaaatttggcccagatgccaaatatattgcagtaggatcaatggaccgaaacctacggatttttggcttgcctggcaatgatgttgagatggagtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022607 GO:0022613 GO:0022618 GO:0030312 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0034622 GO:0034641 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0065003 GO:0070013 GO:0070534 GO:0070647 GO:0071006 GO:0071012 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080008 GO:0090304 GO:0098542 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04120 map03040 map04120

Pfam Domains

Protein Families

Prp19 U-box WD40

Protein Analysis

339

Amino Acids

36.72

Weight (kDa)

6.38

Isoelectric Point (pI)

16.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04510 AT1G04510 AT2G33340 AT2G33340 AT2G33340
fragaria_vesca	FvH4_4g04520 FvH4_4g04520
malus_domestica	MD13G1220800.v1.1 MD16G1225900.v1.1
prunus_persica	Prupe.1G047500_v2.0.a1
pyrus_communis	pycom13g19530 pycom16g18900
rosa_chinensis	RchiOBHm_Chr4g0395291
rosa_laevigata	RLG00000009634
rosa_multiflora	Rmu_sc0015296.1_g000001 Rmu_sc0032966.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340170
rosa_rugosa	Rorug03G0358300
rosa_samantha	Rh4AG058200 Rh4BG057000 Rh4CG062800 Rh4DG053700
rosa_wichuraiana	Rw4G004680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	722
Acc36I	ACCTGC	1 cut(s)	551
Acc65I	GGTACC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	563
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	1 cut(s)	276
AciI	CCGC	2 cut(s)	687, 798
AclWI	GGATC	3 cut(s)	378, 723, 964
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	6 cut(s)	123, 216, 263, 585, 785, 923
AcuI	CTGAAG	3 cut(s)	486, 721, 778
AfaI	GTAC	3 cut(s)	402, 445, 565
AflIII	ACRYGT	1 cut(s)	631
AgsI	TTSAA	3 cut(s)	243, 367, 785
AhlI	ACTAGT	2 cut(s)	848, 914
AjnI	CCWGG	2 cut(s)	118, 991
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	4 cut(s)	380, 392, 815, 845
AluI	AGCT	4 cut(s)	380, 392, 815, 845
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	3 cut(s)	378, 723, 964
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	4 cut(s)	211, 300, 528, 928
ApeKI	GCWGC	4 cut(s)	19, 689, 812, 815
ApoI	RAATTY	6 cut(s)	123, 216, 263, 585, 785, 923
Asp718I	GGTACC	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	723
AspS9I	GGNCC	3 cut(s)	758, 929, 964
AvaII	GGWCC	2 cut(s)	758, 964
BanI	GGYRCC	1 cut(s)	563
BbsI	GAAGAC	1 cut(s)	829
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	31, 676, 802, 824
BccI	CCATC	8 cut(s)	214, 332, 536, 620, 659, 692, 881, 1003
BciT130I	CCWGG	2 cut(s)	120, 993
BciVI	GTATCC	1 cut(s)	490
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	551
BcuI	ACTAGT	2 cut(s)	848, 914
BfaI	CTAG	3 cut(s)	693, 849, 915
BfmI	CTRYAG	1 cut(s)	816
BfuAI	ACCTGC	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	490
BisI	GCNGC	4 cut(s)	20, 690, 813, 816
BlsI	GCNGC	4 cut(s)	21, 691, 814, 817
Bme1390I	CCNGG	2 cut(s)	120, 993
Bme18I	GGWCC	2 cut(s)	758, 964
BmgT120I	GGNCC	3 cut(s)	758, 929, 964
BmiI	GGNNCC	3 cut(s)	54, 565, 823
BmrFI	CCNGG	2 cut(s)	120, 993
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	4 cut(s)	52, 440, 515, 925
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	829
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	553
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 733, 763
Bse1I	ACTGG	3 cut(s)	90, 172, 298
Bse3DI	GCAATG	2 cut(s)	159, 1003
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	120, 993
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	3 cut(s)	94, 535, 549
BseJI	GATNNNNATC	1 cut(s)	141
BseMI	GCAATG	2 cut(s)	159, 1003
BseMII	CTCAG	4 cut(s)	95, 372, 524, 582
BseNI	ACTGG	3 cut(s)	90, 172, 298
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	4 cut(s)	31, 676, 802, 824
Bsh1236I	CGCG	1 cut(s)	276
Bsh1285I	CGRYCG	3 cut(s)	135, 303, 687
BshFI	GGCC	4 cut(s)	213, 302, 530, 930
BshNI	GGYRCC	1 cut(s)	563
BshVI	ATCGAT	1 cut(s)	135
BsiEI	CGRYCG	3 cut(s)	135, 303, 687
BslFI	GGGAC	1 cut(s)	605
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	4 cut(s)	213, 302, 530, 930
Bso31I	GGTCTC	1 cut(s)	551
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	5 cut(s)	132, 199, 370, 715, 956
Bsp68I	TCGCGA	1 cut(s)	276
BspACI	CCGC	2 cut(s)	687, 798
BspANI	GGCC	4 cut(s)	213, 302, 530, 930
BspCNI	CTCAG	4 cut(s)	94, 373, 523, 581
BspDI	ATCGAT	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	3 cut(s)	54, 565, 823
BspMAI	CTGCAG	1 cut(s)	820
BspMI	ACCTGC	1 cut(s)	551
BspPI	GGATC	3 cut(s)	378, 723, 964
BspT107I	GGYRCC	1 cut(s)	563
BspTNI	GGTCTC	1 cut(s)	551
BsrDI	GCAATG	2 cut(s)	159, 1003
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	90, 172, 298
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	5 cut(s)	132, 199, 370, 715, 956
BssNAI	GTATAC	1 cut(s)	78
Bst1107I	GTATAC	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	120, 993
Bst4CI	ACNGT	3 cut(s)	313, 353, 400
Bst6I	CTCTTC	1 cut(s)	105
BstAUI	TGTACA	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	390, 820, 989
BstDEI	CTNAG	5 cut(s)	81, 230, 381, 510, 568
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	3 cut(s)	94, 535, 549
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	723
BstKTI	GATC	5 cut(s)	135, 202, 373, 718, 959
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	5 cut(s)	132, 199, 370, 715, 956
BstMCI	CGRYCG	3 cut(s)	135, 303, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 689, 993
BstNI	CCWGG	2 cut(s)	120, 993
BstNSI	RCATGY	2 cut(s)	407, 635
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	118, 991
BstSFI	CTRYAG	1 cut(s)	816
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	4 cut(s)	31, 676, 802, 824
BstV2I	GAAGAC	1 cut(s)	829
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BstZ17I	GTATAC	1 cut(s)	78
BstZI	CGGCCG	1 cut(s)	300
Bsu15I	ATCGAT	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	490
BsuRI	GGCC	4 cut(s)	213, 302, 530, 930
BsuTUI	ATCGAT	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	94, 535, 549
BtuMI	TCGCGA	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	3 cut(s)	390, 820, 989
CaiI	CAGNNNCTG	1 cut(s)	575
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	723
Cfr13I	GGNCC	3 cut(s)	758, 929, 964
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	3 cut(s)	401, 444, 564
CviAII	CATG	4 cut(s)	146, 404, 447, 632
CviQI	GTAC	3 cut(s)	401, 444, 564
DdeI	CTNAG	5 cut(s)	81, 230, 381, 510, 568
DpnI	GATC	5 cut(s)	134, 201, 372, 717, 958
DpnII	GATC	5 cut(s)	132, 199, 370, 715, 956
EaeI	YGGCCR	1 cut(s)	300
EagI	CGGCCG	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EclXI	CGGCCG	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	551
Eco32I	GATATC	2 cut(s)	39, 87
Eco47I	GGWCC	2 cut(s)	758, 964
Eco52I	CGGCCG	1 cut(s)	300
Eco57I	CTGAAG	3 cut(s)	486, 721, 778
Eco91I	GGTNACC	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	118, 991
EcoRV	GATATC	2 cut(s)	39, 87
FaeI	CATG	4 cut(s)	149, 407, 450, 635
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	4 cut(s)	145, 403, 446, 631
FauI	CCCGC	1 cut(s)	791
FauNDI	CATATG	2 cut(s)	320, 754
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	4 cut(s)	20, 690, 813, 816
FokI	GGATG	3 cut(s)	81, 522, 536
Fsp4HI	GCNGC	4 cut(s)	20, 690, 813, 816
FspBI	CTAG	3 cut(s)	693, 849, 915
FspI	TGCGCA	1 cut(s)	722
GlaI	GCGC	1 cut(s)	722
GluI	GCNGC	4 cut(s)	20, 690, 813, 816
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	213, 302, 530, 930
HhaI	GCGC	1 cut(s)	723
Hin1II	CATG	4 cut(s)	149, 407, 450, 635
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HinfI	GANTC	3 cut(s)	601, 834, 1013
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	9 cut(s)	84, 334, 483, 557, 571, 606, 664, 826, 862
Hpy188III	TCNNGA	8 cut(s)	146, 275, 424, 437, 539, 739, 761, 1017
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	4 cut(s)	145, 241, 361, 667
HpyCH4III	ACNGT	3 cut(s)	313, 353, 400
HpyCH4IV	ACGT	2 cut(s)	47, 594
HpyCH4V	TGCA	7 cut(s)	164, 388, 431, 617, 812, 818, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 689, 993
HpyF3I	CTNAG	5 cut(s)	81, 230, 381, 510, 568
HpySE526I	ACGT	2 cut(s)	47, 594
Hsp92II	CATG	4 cut(s)	149, 407, 450, 635
HspAI	GCGC	1 cut(s)	721
KpnI	GGTACC	1 cut(s)	567
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	132, 199, 370, 715, 956
LmnI	GCTCC	3 cut(s)	58, 557, 827
Lsp1109I	GCAGC	4 cut(s)	31, 676, 802, 824
LweI	GCATC	4 cut(s)	52, 440, 515, 925
MaeI	CTAG	3 cut(s)	693, 849, 915
MaeII	ACGT	2 cut(s)	47, 594
MaeIII	GTNAC	8 cut(s)	250, 353, 394, 424, 515, 643, 671, 803
MalI	GATC	5 cut(s)	134, 201, 372, 717, 958
MboI	GATC	5 cut(s)	132, 199, 370, 715, 956
MboII	GAAGA	2 cut(s)	92, 829
MflI	RGATCY	1 cut(s)	715
MluCI	AATT	8 cut(s)	123, 216, 263, 343, 585, 725, 785, 923
MlyI	GAGTC	2 cut(s)	610, 843
MseI	TTAA	3 cut(s)	261, 705, 728
MslI	CAYNNNNRTG	2 cut(s)	524, 540
MspA1I	CMGCKG	4 cut(s)	380, 689, 798, 815
MspR9I	CCNGG	2 cut(s)	120, 993
MvaI	CCWGG	2 cut(s)	120, 993
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	28, 689, 993
NdeI	CATATG	2 cut(s)	320, 754
NdeII	GATC	5 cut(s)	132, 199, 370, 715, 956
NlaIII	CATG	4 cut(s)	149, 407, 450, 635
NlaIV	GGNNCC	3 cut(s)	54, 565, 823
NmuCI	GTSAC	1 cut(s)	424
NruI	TCGCGA	1 cut(s)	276
NsbI	TGCGCA	1 cut(s)	722
NspI	RCATGY	2 cut(s)	407, 635
OliI	CACNNNNGTG	1 cut(s)	524
PagI	TCATGA	1 cut(s)	145
PciI	ACATGT	1 cut(s)	631
PkrI	GCNGC	4 cut(s)	21, 691, 814, 817
Ple19I	CGATCG	1 cut(s)	135
PleI	GAGTC	2 cut(s)	609, 842
PpsI	GAGTC	2 cut(s)	609, 842
PscI	ACATGT	1 cut(s)	631
Psp6I	CCWGG	2 cut(s)	118, 991
PspEI	GGTNACC	1 cut(s)	250
PspGI	CCWGG	2 cut(s)	118, 991
PspN4I	GGNNCC	3 cut(s)	54, 565, 823
PspPI	GGNCC	3 cut(s)	758, 929, 964
PstI	CTGCAG	1 cut(s)	820
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	715
PvuI	CGATCG	1 cut(s)	135
PvuII	CAGCTG	2 cut(s)	380, 815
RruI	TCGCGA	1 cut(s)	276
RsaI	GTAC	3 cut(s)	402, 445, 565
RsaNI	GTAC	3 cut(s)	401, 444, 564
RseI	CAYNNNNRTG	2 cut(s)	524, 540
SaqAI	TTAA	3 cut(s)	261, 705, 728
SatI	GCNGC	4 cut(s)	20, 690, 813, 816
Sau3AI	GATC	5 cut(s)	132, 199, 370, 715, 956
Sau96I	GGNCC	3 cut(s)	758, 929, 964
SchI	GAGTC	2 cut(s)	610, 843
ScrFI	CCNGG	2 cut(s)	120, 993
SfaNI	GCATC	4 cut(s)	52, 440, 515, 925
SfcI	CTRYAG	1 cut(s)	816
SinI	GGWCC	2 cut(s)	758, 964
SmiMI	CAYNNNNRTG	2 cut(s)	524, 540
SpeI	ACTAGT	2 cut(s)	848, 914
Sse9I	AATT	8 cut(s)	123, 216, 263, 343, 585, 725, 785, 923
SsiI	CCGC	2 cut(s)	687, 798
SspMI	CTAG	3 cut(s)	693, 849, 915
StyD4I	CCNGG	2 cut(s)	118, 991
TaaI	ACNGT	3 cut(s)	313, 353, 400
TaiI	ACGT	2 cut(s)	50, 597
TaqI	TCGA	2 cut(s)	131, 135
TaqII	GACCGA	1 cut(s)	981
TasI	AATT	8 cut(s)	123, 216, 263, 343, 585, 725, 785, 923
TatI	WGTACW	2 cut(s)	400, 443
Tru1I	TTAA	3 cut(s)	261, 705, 728
Tru9I	TTAA	3 cut(s)	261, 705, 728
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	4 cut(s)	19, 689, 812, 815
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	3 cut(s)	92, 131, 524
TspGWI	ACGGA	1 cut(s)	991
VpaK11BI	GGWCC	2 cut(s)	758, 964
XapI	RAATTY	6 cut(s)	123, 216, 263, 585, 785, 923
XceI	RCATGY	2 cut(s)	407, 635
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	3 cut(s)	693, 849, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.