Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008688

Physical Location & Seq

Genomic Coordinates Forward (+)

10185409 .. 10191191

Gene Structure 5783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG057000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGAACTGCTCAATCTCCGGTGAGGTGCCGGAAGAGCCCGTGGTCTCCAGGAAGTCCGGCCTGCTCTTCGAGAAGCGGTTAATAGAGCGCCACATCTCGGAATATGGAAAATGCCCAATCACTGGCGAAGCACTTACCGCCGAGGATATTGTTCCGGTTAAAACTGGCAAGATAGTGAGGCCCAGACCTGTACAAGCTGCGAGCATCCCTGGAATGCTCGGAATGTTTCAGAATGAATGGGATAGTTTGATGCTTTCCAATTTTGCGATGGAGCAACAACTACATACAGCAAGGCAAGAGTTAAGTCATGCTTTGTATCAGCATGATGCTGCTTGTCGTGTTATTGCAAGACTCAAAAAGGAGAGGGACGAAGCAAGATCTTTACTTGCTCAGGCTGACAGACAAATTCCTATGTCAACCCCATCTGCTGTTGCAGTGAATGCTTCTGTCCATAGCAATGGAACACAAGTTGCTGATGACCAGTTGGGATCTGGTGTGAGGAATATACGCCCTGGGATATCTCCTAATATCCTAGCTGAGCTGACAGATTGTAATACAGCACTATCACAGCAGCGAAAGAAGCGACAGATATCCTCCACGTTGGCTCCTATTGATGCTTTGGAGAGGTATACTCAGATATCCAGTCATCCTCTTCATAAAACAAGCAAACCAGGAATTTTGTCGATCGATATTCATCATGAGAAGGACATCATTGCAACTGGAGGGGTTGATACAAATGCTGTAATCTTTGATCAACCATCAGGCCAAATTTTATCTACTCTTAGTGGTCATTCAAAGAAGGTTACCAGCGTTAAATTTGTAGGTCGCGATAATCTGGTCATAACTGGGTCGGCCGACAAGACAGTTCGCATATGGCAAGGCTCTGATGATGGGAATTACAACTGTAACCACACTTTGAAGGATCATACAGCTGAGGTGCAAGCTGTTACTGTACATGCCACAAATAACTACTTCGTGACTGCATCTCTTGATAGTACATGGTGCTTTTACGATATTTCCTCTGGGTTATGTCTGACACAGGTTGAGGATACTTCAGCATCTCAGGGTTACACATCTGTGGCCTTTCATCCTGATGGTCTCATCCTCGGAGCAGGTACCTCAGAGGCTGTTGTCAAAATTTGGGACGTAAAGAGTCAGACAAGGGTTGCAAAGTTTGATGGACATGTTGGGGCAGTAACTTCCATCTCCTTCTCCGAAAATGGTTACTTTCTGGCGACCGCTGCTAGTGATGGTGTTAAACTTTGGGATCTGCGCAAATTAAGGAACTTCAGGACATTTACTCCATATGGTCCTGATACGCCAACAAACTCTGTTGAATTTGACTTCAGCGGGAGTTACCTTGCAGCTGCAGGCTCCGATATAAGAGTCTTCCAAGCTACTAGTGTCAAATCAGAATGGAACACCATCAAAACTTTCCCTGATATGTCAGGCACAGGTAAAGCAACTAGTGTAAAATTTGGCCCAGATGCCAAATATATTGCAGTAGGATCAATGGACCGAAACCTACGGATTTTTGGCTTGCCTGGCAATGATGTTGAGATGGAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022607 GO:0022613 GO:0022618 GO:0030312 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0034622 GO:0034641 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0065003 GO:0070013 GO:0070534 GO:0070647 GO:0071006 GO:0071012 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080008 GO:0090304 GO:0098542 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04120 map03040 map04120

Pfam Domains

Protein Families

Prp19 U-box WD40

Protein Analysis

523

Amino Acids

56.83

Weight (kDa)

6.32

Isoelectric Point (pI)

26.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prp19	PF08606	66 - 131	2e-30	Prp19/Pso4-like
WD40_Prp19	PF24814	218 - 506	1.8e-107	Prp19 WD40 domain
Beta-prop_DCAF12	PF23760	218 - 307	1.1e-06	DDB1- and CUL4-associated factor 12 beta propeller
Beta-prop_WDR5	PF25175	221 - 367	5.9e-25	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	224 - 339	1.3e-19	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	225 - 337	7.8e-14	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	225 - 345	3.4e-10	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	225 - 387	1.5e-14	G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd	PF24782	226 - 293	4e-08	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	226 - 298	1.1e-08	WDHD1 first WD40 domain
Beta-prop_EML	PF23409	226 - 423	4.9e-11	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2	PF23414	226 - 313	3.5e-06	Echinoderm microtubule-associated protein second beta-propeller
EIF3I	PF24805	227 - 294	6.8e-06	EIF3I
Beta-prop_WDR19_1st	PF23389	233 - 456	3.9e-06	WDR19 first beta-propeller
WD40	PF00400	255 - 292	4.8e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	258 - 352	1.9e-07	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	261 - 353	9.5e-08	EIF3I
Beta-prop_THOC3	PF25174	264 - 512	8.3e-39	THOC3 beta-propeller domain
WDR55	PF24796	266 - 424	4.9e-14	WDR55
WD40_MABP1-WDR62_2nd	PF24782	299 - 422	2.1e-07	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	300 - 426	3.3e-08	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	306 - 459	8.9e-16	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	314 - 418	4.8e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	319 - 419	1.8e-10	WDR90/POC16, second beta-propeller
WD40_Gbeta	PF25391	322 - 512	9.5e-14	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	323 - 429	9.4e-06	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	352 - 464	2.1e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	354 - 512	8.6e-20	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	354 - 512	2.5e-15	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	357 - 422	5.9e-06	WDR3 second beta-propeller domain
EIF3I	PF24805	358 - 512	1.2e-08	EIF3I
Beta-prop_WDR3_1st	PF25173	358 - 461	9e-15	WDR3 first beta-propeller domain
WD40	PF00400	388 - 423	6e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04510 AT1G04510 AT2G33340 AT2G33340 AT2G33340
fragaria_vesca	FvH4_4g04520 FvH4_4g04520
malus_domestica	MD13G1220800.v1.1 MD16G1225900.v1.1
prunus_persica	Prupe.1G047500_v2.0.a1
pyrus_communis	pycom13g19530 pycom16g18900
rosa_chinensis	RchiOBHm_Chr4g0395291
rosa_laevigata	RLG00000009634
rosa_multiflora	Rmu_sc0015296.1_g000001 Rmu_sc0032966.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340170
rosa_rugosa	Rorug03G0358300
rosa_samantha	Rh4AG058200 Rh4BG057000 Rh4CG062800 Rh4DG053700
rosa_wichuraiana	Rw4G004680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1274
Acc36I	ACCTGC	1 cut(s)	1103
Acc65I	GGTACC	1 cut(s)	1115
AccB1I	GGYRCC	2 cut(s)	25, 1115
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	629
AccII	CGCG	1 cut(s)	828
AciI	CCGC	4 cut(s)	76, 138, 1239, 1350
AclWI	GGATC	4 cut(s)	496, 930, 1275, 1516
AcoI	YGGCCR	1 cut(s)	852
AcsI	RAATTY	7 cut(s)	405, 675, 768, 815, 1137, 1337, 1475
AcuI	CTGAAG	3 cut(s)	1038, 1273, 1330
AfaI	GTAC	4 cut(s)	192, 954, 997, 1117
AfiI	CCNNNNNNNGG	2 cut(s)	97, 122
AflIII	ACRYGT	1 cut(s)	1183
AgsI	TTSAA	3 cut(s)	795, 919, 1337
AhlI	ACTAGT	2 cut(s)	1400, 1466
AjnI	CCWGG	5 cut(s)	47, 208, 511, 670, 1543
AleI	CACNNNNGTG	1 cut(s)	1076
AluBI	AGCT	7 cut(s)	197, 536, 541, 932, 944, 1367, 1397
AluI	AGCT	7 cut(s)	197, 536, 541, 932, 944, 1367, 1397
Alw26I	GTCTC	2 cut(s)	49, 1103
AlwI	GGATC	4 cut(s)	496, 930, 1275, 1516
AlwNI	CAGNNNCTG	1 cut(s)	1127
AoxI	GGCC	6 cut(s)	58, 179, 763, 852, 1080, 1480
ApeKI	GCWGC	6 cut(s)	197, 329, 571, 1241, 1364, 1367
ApoI	RAATTY	7 cut(s)	405, 675, 768, 815, 1137, 1337, 1475
Asp718I	GGTACC	1 cut(s)	1115
AspLEI	GCGC	2 cut(s)	90, 1275
AspS9I	GGNCC	4 cut(s)	180, 1310, 1481, 1516
AsuHPI	GGTGA	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	1310, 1516
BanI	GGYRCC	2 cut(s)	25, 1115
BanII	GRGCYC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	1381
BbvCI	CCTCAGC	1 cut(s)	933
BbvI	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
BciT130I	CCWGG	5 cut(s)	49, 210, 513, 672, 1545
BciVI	GTATCC	1 cut(s)	1042
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	2 cut(s)	49, 1103
BcuI	ACTAGT	2 cut(s)	1400, 1466
BfaI	CTAG	4 cut(s)	533, 1245, 1401, 1467
BfmI	CTRYAG	1 cut(s)	1368
BfoI	RGCGCY	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	1103
BfuI	GTATCC	1 cut(s)	1042
BglII	AGATCT	1 cut(s)	377
BisI	GCNGC	6 cut(s)	198, 330, 572, 1242, 1365, 1368
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	6 cut(s)	199, 331, 573, 1243, 1366, 1369
Bme1390I	CCNGG	5 cut(s)	49, 210, 513, 672, 1545
Bme18I	GGWCC	2 cut(s)	1310, 1516
BmgT120I	GGNCC	4 cut(s)	180, 1310, 1481, 1516
BmiI	GGNNCC	4 cut(s)	27, 606, 1117, 1375
BmrFI	CCNGG	5 cut(s)	49, 210, 513, 672, 1545
BmrI	ACTGGG	1 cut(s)	855
BmsI	GCATC	7 cut(s)	213, 240, 316, 604, 992, 1067, 1477
BmuI	ACTGGG	1 cut(s)	855
BpiI	GAAGAC	1 cut(s)	1381
BplI	GAGNNNNNCTC	2 cut(s)	616, 648
BpmI	CTGGAG	2 cut(s)	31, 741
Bpu10I	CCTNAGC	2 cut(s)	390, 933
Bpu1102I	GCTNAGC	1 cut(s)	537
Bsa29I	ATCGAT	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	693
BsaI	GGTCTC	2 cut(s)	49, 1103
BsaJI	CCNNGG	6 cut(s)	39, 141, 208, 511, 512, 1105
BsaWI	WCCGGW	2 cut(s)	17, 154
BsaXI	ACNNNNNCTCC	4 cut(s)	589, 619, 1285, 1315
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 122
Bse1I	ACTGG	6 cut(s)	127, 169, 481, 642, 724, 850
Bse3DI	GCAATG	3 cut(s)	463, 711, 1555
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	5 cut(s)	49, 210, 513, 672, 1545
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	6 cut(s)	39, 141, 208, 511, 512, 1105
BseGI	GGATG	4 cut(s)	204, 646, 1087, 1101
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	2 cut(s)	97, 122
BseMI	GCAATG	3 cut(s)	463, 711, 1555
BseMII	CTCAG	6 cut(s)	404, 528, 647, 924, 1076, 1134
BseNI	ACTGG	6 cut(s)	127, 169, 481, 642, 724, 850
BseX3I	CGGCCG	1 cut(s)	852
BseXI	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
Bsh1236I	CGCG	1 cut(s)	828
Bsh1285I	CGRYCG	3 cut(s)	687, 855, 1239
BshFI	GGCC	6 cut(s)	60, 181, 765, 854, 1082, 1482
BshNI	GGYRCC	2 cut(s)	25, 1115
BshVI	ATCGAT	1 cut(s)	687
BsiEI	CGRYCG	3 cut(s)	687, 855, 1239
BsiSI	CCGG	4 cut(s)	18, 29, 57, 155
BslFI	GGGAC	2 cut(s)	380, 1157
BslI	CCNNNNNNNGG	2 cut(s)	97, 122
BsmAI	GTCTC	2 cut(s)	49, 1103
BsmFI	GGGAC	2 cut(s)	380, 1157
BsmI	GAATGC	2 cut(s)	219, 445
BsnI	GGCC	6 cut(s)	60, 181, 765, 854, 1082, 1482
Bso31I	GGTCTC	2 cut(s)	49, 1103
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp1407I	TGTACA	2 cut(s)	190, 952
Bsp143I	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
Bsp1720I	GCTNAGC	1 cut(s)	537
Bsp68I	TCGCGA	1 cut(s)	828
BspACI	CCGC	4 cut(s)	76, 138, 1239, 1350
BspANI	GGCC	6 cut(s)	60, 181, 765, 854, 1082, 1482
BspCNI	CTCAG	6 cut(s)	403, 529, 646, 925, 1075, 1133
BspDI	ATCGAT	1 cut(s)	687
BspFNI	CGCG	1 cut(s)	828
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	4 cut(s)	27, 606, 1117, 1375
BspMAI	CTGCAG	1 cut(s)	1372
BspMI	ACCTGC	1 cut(s)	1103
BspPI	GGATC	4 cut(s)	496, 930, 1275, 1516
BspQI	GCTCTTC	2 cut(s)	27, 71
BspT107I	GGYRCC	2 cut(s)	25, 1115
BspTNI	GGTCTC	2 cut(s)	49, 1103
BsrDI	GCAATG	3 cut(s)	463, 711, 1555
BsrGI	TGTACA	2 cut(s)	190, 952
BsrI	ACTGG	6 cut(s)	127, 169, 481, 642, 724, 850
BssECI	CCNNGG	6 cut(s)	39, 141, 208, 511, 512, 1105
BssMI	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
BssNAI	GTATAC	1 cut(s)	630
Bst1107I	GTATAC	1 cut(s)	630
Bst2UI	CCWGG	5 cut(s)	49, 210, 513, 672, 1545
Bst4CI	ACNGT	3 cut(s)	865, 905, 952
Bst6I	CTCTTC	3 cut(s)	27, 71, 657
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstAUI	TGTACA	2 cut(s)	190, 952
BstC8I	GCNNGC	5 cut(s)	62, 202, 942, 1372, 1541
BstDEI	CTNAG	7 cut(s)	390, 537, 633, 782, 933, 1062, 1120
BstDSI	CCRYGG	1 cut(s)	39
BstEII	GGTNACC	1 cut(s)	802
BstF5I	GGATG	4 cut(s)	204, 646, 1087, 1101
BstFNI	CGCG	1 cut(s)	828
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	90, 1275
BstKTI	GATC	7 cut(s)	380, 491, 687, 754, 925, 1270, 1511
BstMAI	GTCTC	2 cut(s)	49, 1103
BstMBI	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
BstMCI	CGRYCG	3 cut(s)	687, 855, 1239
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 137, 440, 580, 1241, 1545
BstNI	CCWGG	5 cut(s)	49, 210, 513, 672, 1545
BstNSI	RCATGY	2 cut(s)	959, 1187
BstPI	GGTNACC	1 cut(s)	802
BstSCI	CCNGG	5 cut(s)	47, 208, 511, 670, 1543
BstSFI	CTRYAG	1 cut(s)	1368
BstUI	CGCG	1 cut(s)	828
BstV1I	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
BstV2I	GAAGAC	1 cut(s)	1381
BstX2I	RGATCY	3 cut(s)	377, 488, 1267
BstXI	CCANNNNNNTGG	1 cut(s)	458
BstYI	RGATCY	3 cut(s)	377, 488, 1267
BstZ17I	GTATAC	1 cut(s)	630
BstZI	CGGCCG	1 cut(s)	852
Bsu15I	ATCGAT	1 cut(s)	687
BsuI	GTATCC	1 cut(s)	1042
BsuRI	GGCC	6 cut(s)	60, 181, 765, 854, 1082, 1482
BsuTUI	ATCGAT	1 cut(s)	687
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	281
BtsCI	GGATG	4 cut(s)	204, 646, 1087, 1101
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	120, 441
BtuMI	TCGCGA	1 cut(s)	828
BveI	ACCTGC	1 cut(s)	1103
Cac8I	GCNNGC	5 cut(s)	62, 202, 942, 1372, 1541
CaiI	CAGNNNCTG	1 cut(s)	1127
CciI	TCATGA	1 cut(s)	697
CfoI	GCGC	2 cut(s)	90, 1275
Cfr13I	GGNCC	4 cut(s)	180, 1310, 1481, 1516
ClaI	ATCGAT	1 cut(s)	687
Csp6I	GTAC	4 cut(s)	191, 953, 996, 1116
CviAII	CATG	6 cut(s)	308, 323, 698, 956, 999, 1184
CviQI	GTAC	4 cut(s)	191, 953, 996, 1116
DdeI	CTNAG	7 cut(s)	390, 537, 633, 782, 933, 1062, 1120
DpnI	GATC	7 cut(s)	379, 490, 686, 753, 924, 1269, 1510
DpnII	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
EaeI	YGGCCR	1 cut(s)	852
EagI	CGGCCG	1 cut(s)	852
Eam1104I	CTCTTC	3 cut(s)	27, 71, 657
EarI	CTCTTC	3 cut(s)	27, 71, 657
EclXI	CGGCCG	1 cut(s)	852
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	2 cut(s)	49, 1103
Eco32I	GATATC	3 cut(s)	519, 591, 639
Eco47I	GGWCC	2 cut(s)	1310, 1516
Eco52I	CGGCCG	1 cut(s)	852
Eco57I	CTGAAG	3 cut(s)	1038, 1273, 1330
Eco91I	GGTNACC	1 cut(s)	802
EcoO65I	GGTNACC	1 cut(s)	802
EcoRII	CCWGG	5 cut(s)	47, 208, 511, 670, 1543
EcoRV	GATATC	3 cut(s)	519, 591, 639
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	6 cut(s)	311, 326, 701, 959, 1002, 1187
FalI	AAGNNNNNCTT	2 cut(s)	295, 327
FaqI	GGGAC	2 cut(s)	380, 1157
FatI	CATG	6 cut(s)	307, 322, 697, 955, 998, 1183
FauI	CCCGC	1 cut(s)	1343
FauNDI	CATATG	2 cut(s)	872, 1306
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	6 cut(s)	198, 330, 572, 1242, 1365, 1368
FokI	GGATG	4 cut(s)	191, 633, 1074, 1088
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	6 cut(s)	198, 330, 572, 1242, 1365, 1368
FspBI	CTAG	4 cut(s)	533, 1245, 1401, 1467
FspI	TGCGCA	1 cut(s)	1274
GlaI	GCGC	2 cut(s)	89, 1274
GluI	GCNGC	6 cut(s)	198, 330, 572, 1242, 1365, 1368
GsuI	CTGGAG	2 cut(s)	31, 741
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	6 cut(s)	60, 181, 765, 854, 1082, 1482
HapII	CCGG	4 cut(s)	18, 29, 57, 155
HhaI	GCGC	2 cut(s)	90, 1275
Hin1II	CATG	6 cut(s)	311, 326, 701, 959, 1002, 1187
Hin6I	GCGC	2 cut(s)	88, 1273
HinP1I	GCGC	2 cut(s)	88, 1273
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	4 cut(s)	351, 1153, 1386, 1565
HpaII	CCGG	4 cut(s)	18, 29, 57, 155
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	417, 630
Hpy188III	TCNNGA	9 cut(s)	70, 698, 827, 976, 989, 1091, 1291, 1313, 1569
Hpy8I	GTNNAC	2 cut(s)	417, 630
HpyAV	CCTTC	4 cut(s)	697, 793, 913, 1219
HpyCH4III	ACNGT	3 cut(s)	865, 905, 952
HpyCH4IV	ACGT	2 cut(s)	599, 1146
HpyCH4V	TGCA	9 cut(s)	347, 434, 716, 940, 983, 1169, 1364, 1370, 1502
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 137, 440, 580, 1241, 1545
HpyF3I	CTNAG	7 cut(s)	390, 537, 633, 782, 933, 1062, 1120
HpySE526I	ACGT	2 cut(s)	599, 1146
Hsp92II	CATG	6 cut(s)	311, 326, 701, 959, 1002, 1187
HspAI	GCGC	2 cut(s)	88, 1273
KpnI	GGTACC	1 cut(s)	1119
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
LguI	GCTCTTC	2 cut(s)	27, 71
LmnI	GCTCC	4 cut(s)	271, 610, 1109, 1379
Lsp1109I	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
LweI	GCATC	7 cut(s)	213, 240, 316, 604, 992, 1067, 1477
MaeI	CTAG	4 cut(s)	533, 1245, 1401, 1467
MaeII	ACGT	2 cut(s)	599, 1146
MaeIII	GTNAC	8 cut(s)	802, 905, 946, 976, 1067, 1195, 1223, 1355
MalI	GATC	7 cut(s)	379, 490, 686, 753, 924, 1269, 1510
MboI	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
MboII	GAAGA	4 cut(s)	44, 58, 644, 1381
MflI	RGATCY	3 cut(s)	377, 488, 1267
MhlI	GDGCHC	1 cut(s)	39
MlyI	GAGTC	3 cut(s)	345, 1162, 1395
MseI	TTAA	6 cut(s)	80, 159, 302, 813, 1257, 1280
MslI	CAYNNNNRTG	3 cut(s)	456, 1076, 1092
MspA1I	CMGCKG	4 cut(s)	932, 1241, 1350, 1367
MspI	CCGG	4 cut(s)	18, 29, 57, 155
MspR9I	CCNGG	5 cut(s)	49, 210, 513, 672, 1545
Mva1269I	GAATGC	2 cut(s)	219, 445
MvaI	CCWGG	5 cut(s)	49, 210, 513, 672, 1545
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	6 cut(s)	34, 137, 440, 580, 1241, 1545
NdeI	CATATG	2 cut(s)	872, 1306
NdeII	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
NlaIII	CATG	6 cut(s)	311, 326, 701, 959, 1002, 1187
NlaIV	GGNNCC	4 cut(s)	27, 606, 1117, 1375
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	976
NruI	TCGCGA	1 cut(s)	828
NsbI	TGCGCA	1 cut(s)	1274
NspI	RCATGY	2 cut(s)	959, 1187
OliI	CACNNNNGTG	1 cut(s)	1076
PagI	TCATGA	1 cut(s)	697
PasI	CCCWGGG	1 cut(s)	512
PciI	ACATGT	1 cut(s)	1183
PciSI	GCTCTTC	2 cut(s)	27, 71
PctI	GAATGC	2 cut(s)	219, 445
PflMI	CCANNNNNTGG	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	6 cut(s)	199, 331, 573, 1243, 1366, 1369
Ple19I	CGATCG	1 cut(s)	687
PleI	GAGTC	3 cut(s)	345, 1161, 1394
PpsI	GAGTC	3 cut(s)	345, 1161, 1394
PscI	ACATGT	1 cut(s)	1183
Psp6I	CCWGG	5 cut(s)	47, 208, 511, 670, 1543
PspEI	GGTNACC	1 cut(s)	802
PspGI	CCWGG	5 cut(s)	47, 208, 511, 670, 1543
PspN4I	GGNNCC	4 cut(s)	27, 606, 1117, 1375
PspPI	GGNCC	4 cut(s)	180, 1310, 1481, 1516
PstI	CTGCAG	1 cut(s)	1372
PstNI	CAGNNNCTG	1 cut(s)	1127
PsuI	RGATCY	3 cut(s)	377, 488, 1267
PvuI	CGATCG	1 cut(s)	687
PvuII	CAGCTG	2 cut(s)	932, 1367
RruI	TCGCGA	1 cut(s)	828
RsaI	GTAC	4 cut(s)	192, 954, 997, 1117
RsaNI	GTAC	4 cut(s)	191, 953, 996, 1116
RseI	CAYNNNNRTG	3 cut(s)	456, 1076, 1092
SapI	GCTCTTC	2 cut(s)	27, 71
SaqAI	TTAA	6 cut(s)	80, 159, 302, 813, 1257, 1280
SatI	GCNGC	6 cut(s)	198, 330, 572, 1242, 1365, 1368
Sau3AI	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
Sau96I	GGNCC	4 cut(s)	180, 1310, 1481, 1516
SchI	GAGTC	3 cut(s)	345, 1162, 1395
ScrFI	CCNGG	5 cut(s)	49, 210, 513, 672, 1545
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	7 cut(s)	213, 240, 316, 604, 992, 1067, 1477
SfcI	CTRYAG	1 cut(s)	1368
SinI	GGWCC	2 cut(s)	1310, 1516
SmiMI	CAYNNNNRTG	3 cut(s)	456, 1076, 1092
SpeI	ACTAGT	2 cut(s)	1400, 1466
SsiI	CCGC	4 cut(s)	76, 138, 1239, 1350
SspMI	CTAG	4 cut(s)	533, 1245, 1401, 1467
StyD4I	CCNGG	5 cut(s)	47, 208, 511, 670, 1543
TaaI	ACNGT	3 cut(s)	865, 905, 952
TaiI	ACGT	2 cut(s)	602, 1149
TaqI	TCGA	3 cut(s)	69, 683, 687
TaqII	GACCGA	1 cut(s)	1533
TatI	WGTACW	3 cut(s)	190, 952, 995
Tru1I	TTAA	6 cut(s)	80, 159, 302, 813, 1257, 1280
Tru9I	TTAA	6 cut(s)	80, 159, 302, 813, 1257, 1280
TscAI	CASTG	2 cut(s)	127, 441
TseFI	GTSAC	1 cut(s)	976
TseI	GCWGC	6 cut(s)	197, 329, 571, 1241, 1364, 1367
Tsp45I	GTSAC	1 cut(s)	976
TspDTI	ATGAA	5 cut(s)	17, 249, 644, 683, 1076
TspGWI	ACGGA	1 cut(s)	1543
TspRI	CASTG	2 cut(s)	127, 441
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	1310, 1516
XapI	RAATTY	7 cut(s)	405, 675, 768, 815, 1137, 1337, 1475
XceI	RCATGY	2 cut(s)	959, 1187
XcmI	CCANNNNNNNNNTGG	2 cut(s)	265, 488
XmiI	GTMKAC	1 cut(s)	629
XspI	CTAG	4 cut(s)	533, 1245, 1401, 1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.