Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032966.1

Orthogroup ID

OG0008688

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3058

Gene Structure 3058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032966.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 866 bp

tcttctccgtccgtacagtctccggtgaggtgccggaagagcccgtggtctccaggaagtccggcctgctcttcgagaagcggttaatagagcgccacatctcggaatatggaaaatgcccaatcactggcgaagcacttaccgccgaggatattgttccggttaaaactggcaagatagtgaggcccagacctgtacaagctgcgagcatccctggaatgctcggaatgtttcagaatgaatgggatagtttgatgctttccaattttgcgatggagcaacaactacatacagcaaggcaagagttaagtcatgctttgtatcagcatgatgctgcttgtcgtgttattgcaagactcaaaaaggagagggacgaagcaagatctttacttgctcaggctgacagacaaattcctatgtcaaccccatctgctgttgcagtgaatgcttctgtccatagcaatggaacacaagttgctgatgaccagttgggatctggtgtgaggaatatacgccctgggatatctcctaatatcctagctgagctgacagattgtaatacagcactatcacagcagcgaaagaagcgacagatatcctccacgttggctcctattgatgctttggagaggtatactcagatatccagtcatcctcttcataaaacaagcaaaccaggaattttgtcgatcgatattcatcatgagaaggacatcattgcaactggaggggttgatacaaatgctgtaatctttgatcaaccatcaggccaaattttatctactcttagtggtcattcaaagaaggttaccagcgttaaatttgtaggtcgcgataatctggtcataactgggtcggccgacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022607 GO:0022613 GO:0022618 GO:0030312 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0034622 GO:0034641 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0065003 GO:0070013 GO:0070534 GO:0070647 GO:0071006 GO:0071012 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080008 GO:0090304 GO:0098542 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04120 map03040 map04120

Pfam Domains

Protein Families

Prp19 U-box WD40

Protein Analysis

288

Amino Acids

31.37

Weight (kDa)

8.74

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04510 AT1G04510 AT2G33340 AT2G33340 AT2G33340
fragaria_vesca	FvH4_4g04520 FvH4_4g04520
malus_domestica	MD13G1220800.v1.1 MD16G1225900.v1.1
prunus_persica	Prupe.1G047500_v2.0.a1
pyrus_communis	pycom13g19530 pycom16g18900
rosa_chinensis	RchiOBHm_Chr4g0395291
rosa_laevigata	RLG00000009634
rosa_multiflora	Rmu_sc0015296.1_g000001 Rmu_sc0032966.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340170
rosa_rugosa	Rorug03G0358300
rosa_samantha	Rh4AG058200 Rh4BG057000 Rh4CG062800 Rh4DG053700
rosa_wichuraiana	Rw4G004680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	30
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	634
AccII	CGCG	1 cut(s)	833
AciI	CCGC	2 cut(s)	81, 143
AclWI	GGATC	1 cut(s)	501
AcoI	YGGCCR	1 cut(s)	857
AcsI	RAATTY	4 cut(s)	410, 680, 773, 820
AfaI	GTAC	2 cut(s)	15, 197
AfiI	CCNNNNNNNGG	2 cut(s)	102, 127
AgsI	TTSAA	1 cut(s)	800
AjnI	CCWGG	4 cut(s)	52, 213, 516, 675
AluBI	AGCT	3 cut(s)	202, 541, 546
AluI	AGCT	3 cut(s)	202, 541, 546
Alw26I	GTCTC	2 cut(s)	24, 54
AlwI	GGATC	1 cut(s)	501
AoxI	GGCC	4 cut(s)	63, 184, 768, 857
ApeKI	GCWGC	3 cut(s)	202, 334, 576
ApoI	RAATTY	4 cut(s)	410, 680, 773, 820
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	189, 321, 588
BccI	CCATC	3 cut(s)	267, 435, 771
BciT130I	CCWGG	4 cut(s)	54, 215, 518, 677
BclI	TGATCA	1 cut(s)	756
BcoDI	GTCTC	2 cut(s)	24, 54
BfaI	CTAG	1 cut(s)	538
BfoI	RGCGCY	1 cut(s)	96
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	3 cut(s)	203, 335, 577
BlpI	GCTNAGC	1 cut(s)	542
BlsI	GCNGC	3 cut(s)	204, 336, 578
Bme1390I	CCNGG	4 cut(s)	54, 215, 518, 677
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	32, 611
BmrFI	CCNGG	4 cut(s)	54, 215, 518, 677
BmrI	ACTGGG	1 cut(s)	860
BmsI	GCATC	4 cut(s)	218, 245, 321, 609
BmuI	ACTGGG	1 cut(s)	860
BplI	GAGNNNNNCTC	2 cut(s)	621, 653
BpmI	CTGGAG	2 cut(s)	36, 746
Bpu10I	CCTNAGC	1 cut(s)	395
Bpu1102I	GCTNAGC	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	692
BsaBI	GATNNNNATC	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	5 cut(s)	44, 146, 213, 516, 517
BsaWI	WCCGGW	2 cut(s)	22, 159
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 127
Bse1I	ACTGG	6 cut(s)	132, 174, 486, 647, 729, 855
Bse3DI	GCAATG	2 cut(s)	468, 716
Bse8I	GATNNNNATC	1 cut(s)	698
BseBI	CCWGG	4 cut(s)	54, 215, 518, 677
BseCI	ATCGAT	1 cut(s)	692
BseDI	CCNNGG	5 cut(s)	44, 146, 213, 516, 517
BseGI	GGATG	2 cut(s)	209, 651
BseJI	GATNNNNATC	1 cut(s)	698
BseLI	CCNNNNNNNGG	2 cut(s)	102, 127
BseMI	GCAATG	2 cut(s)	468, 716
BseMII	CTCAG	3 cut(s)	409, 533, 652
BseNI	ACTGG	6 cut(s)	132, 174, 486, 647, 729, 855
BseX3I	CGGCCG	1 cut(s)	857
BseXI	GCAGC	3 cut(s)	189, 321, 588
Bsh1236I	CGCG	1 cut(s)	833
Bsh1285I	CGRYCG	2 cut(s)	692, 860
BshFI	GGCC	4 cut(s)	65, 186, 770, 859
BshNI	GGYRCC	1 cut(s)	30
BshVI	ATCGAT	1 cut(s)	692
BsiEI	CGRYCG	2 cut(s)	692, 860
BsiSI	CCGG	4 cut(s)	23, 34, 62, 160
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	102, 127
BsmAI	GTCTC	2 cut(s)	24, 54
BsmFI	GGGAC	1 cut(s)	385
BsmI	GAATGC	2 cut(s)	224, 450
BsnI	GGCC	4 cut(s)	65, 186, 770, 859
Bso31I	GGTCTC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	382, 493, 689, 756
Bsp1720I	GCTNAGC	1 cut(s)	542
Bsp68I	TCGCGA	1 cut(s)	833
BspACI	CCGC	2 cut(s)	81, 143
BspANI	GGCC	4 cut(s)	65, 186, 770, 859
BspCNI	CTCAG	3 cut(s)	408, 534, 651
BspDI	ATCGAT	1 cut(s)	692
BspFNI	CGCG	1 cut(s)	833
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	32, 611
BspPI	GGATC	1 cut(s)	501
BspQI	GCTCTTC	2 cut(s)	32, 76
BspT107I	GGYRCC	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	468, 716
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	6 cut(s)	132, 174, 486, 647, 729, 855
BssECI	CCNNGG	5 cut(s)	44, 146, 213, 516, 517
BssMI	GATC	4 cut(s)	382, 493, 689, 756
BssNAI	GTATAC	1 cut(s)	635
Bst1107I	GTATAC	1 cut(s)	635
Bst2UI	CCWGG	4 cut(s)	54, 215, 518, 677
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	3 cut(s)	32, 76, 662
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	67, 207
BstDEI	CTNAG	4 cut(s)	395, 542, 638, 787
BstDSI	CCRYGG	1 cut(s)	44
BstEII	GGTNACC	1 cut(s)	807
BstF5I	GGATG	2 cut(s)	209, 651
BstFNI	CGCG	1 cut(s)	833
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	4 cut(s)	385, 496, 692, 759
BstMAI	GTCTC	2 cut(s)	24, 54
BstMBI	GATC	4 cut(s)	382, 493, 689, 756
BstMCI	CGRYCG	2 cut(s)	692, 860
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 142, 445, 585
BstNI	CCWGG	4 cut(s)	54, 215, 518, 677
BstPI	GGTNACC	1 cut(s)	807
BstSCI	CCNGG	4 cut(s)	52, 213, 516, 675
BstUI	CGCG	1 cut(s)	833
BstV1I	GCAGC	3 cut(s)	189, 321, 588
BstX2I	RGATCY	2 cut(s)	382, 493
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	2 cut(s)	382, 493
BstZ17I	GTATAC	1 cut(s)	635
BstZI	CGGCCG	1 cut(s)	857
Bsu15I	ATCGAT	1 cut(s)	692
BsuRI	GGCC	4 cut(s)	65, 186, 770, 859
BsuTUI	ATCGAT	1 cut(s)	692
BtgI	CCRYGG	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	209, 651
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	2 cut(s)	125, 446
BtuMI	TCGCGA	1 cut(s)	833
Cac8I	GCNNGC	2 cut(s)	67, 207
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	14, 196
CviAII	CATG	3 cut(s)	313, 328, 703
CviQI	GTAC	2 cut(s)	14, 196
DdeI	CTNAG	4 cut(s)	395, 542, 638, 787
DpnI	GATC	4 cut(s)	384, 495, 691, 758
DpnII	GATC	4 cut(s)	382, 493, 689, 756
EaeI	YGGCCR	1 cut(s)	857
EagI	CGGCCG	1 cut(s)	857
Eam1104I	CTCTTC	3 cut(s)	32, 76, 662
EarI	CTCTTC	3 cut(s)	32, 76, 662
EclXI	CGGCCG	1 cut(s)	857
Eco24I	GRGCYC	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	54
Eco32I	GATATC	3 cut(s)	524, 596, 644
Eco52I	CGGCCG	1 cut(s)	857
Eco91I	GGTNACC	1 cut(s)	807
EcoO65I	GGTNACC	1 cut(s)	807
EcoRII	CCWGG	4 cut(s)	52, 213, 516, 675
EcoRV	GATATC	3 cut(s)	524, 596, 644
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	3 cut(s)	316, 331, 706
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	3 cut(s)	312, 327, 702
FbaI	TGATCA	1 cut(s)	756
FblI	GTMKAC	1 cut(s)	634
Fnu4HI	GCNGC	3 cut(s)	203, 335, 577
FokI	GGATG	2 cut(s)	196, 638
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	203, 335, 577
FspBI	CTAG	1 cut(s)	538
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	3 cut(s)	203, 335, 577
GsuI	CTGGAG	2 cut(s)	36, 746
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	4 cut(s)	65, 186, 770, 859
HapII	CCGG	4 cut(s)	23, 34, 62, 160
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	316, 331, 706
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	4 cut(s)	23, 34, 62, 160
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	2 cut(s)	422, 635
Hpy188I	TCNGA	4 cut(s)	105, 226, 236, 641
Hpy188III	TCNNGA	3 cut(s)	75, 703, 832
Hpy8I	GTNNAC	2 cut(s)	422, 635
HpyAV	CCTTC	2 cut(s)	702, 798
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	3 cut(s)	352, 439, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 142, 445, 585
HpyF3I	CTNAG	4 cut(s)	395, 542, 638, 787
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	3 cut(s)	316, 331, 706
HspAI	GCGC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	756
Kzo9I	GATC	4 cut(s)	382, 493, 689, 756
LguI	GCTCTTC	2 cut(s)	32, 76
LmnI	GCTCC	2 cut(s)	276, 615
Lsp1109I	GCAGC	3 cut(s)	189, 321, 588
LweI	GCATC	4 cut(s)	218, 245, 321, 609
MaeI	CTAG	1 cut(s)	538
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	1 cut(s)	807
MalI	GATC	4 cut(s)	384, 495, 691, 758
MboI	GATC	4 cut(s)	382, 493, 689, 756
MboII	GAAGA	3 cut(s)	49, 63, 649
MflI	RGATCY	2 cut(s)	382, 493
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	5 cut(s)	264, 410, 680, 773, 820
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	9 cut(s)	21, 141, 176, 362, 497, 609, 623, 665, 721
MseI	TTAA	4 cut(s)	85, 164, 307, 818
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	4 cut(s)	23, 34, 62, 160
MspR9I	CCNGG	4 cut(s)	54, 215, 518, 677
Mva1269I	GAATGC	2 cut(s)	224, 450
MvaI	CCWGG	4 cut(s)	54, 215, 518, 677
MvnI	CGCG	1 cut(s)	833
MwoI	GCNNNNNNNGC	4 cut(s)	39, 142, 445, 585
NdeII	GATC	4 cut(s)	382, 493, 689, 756
NlaIII	CATG	3 cut(s)	316, 331, 706
NlaIV	GGNNCC	2 cut(s)	32, 611
NmeAIII	GCCGAG	1 cut(s)	171
NruI	TCGCGA	1 cut(s)	833
PagI	TCATGA	1 cut(s)	702
PasI	CCCWGGG	1 cut(s)	517
PciSI	GCTCTTC	2 cut(s)	32, 76
PctI	GAATGC	2 cut(s)	224, 450
PflMI	CCANNNNNTGG	1 cut(s)	127
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	204, 336, 578
Ple19I	CGATCG	1 cut(s)	692
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	4 cut(s)	52, 213, 516, 675
PspEI	GGTNACC	1 cut(s)	807
PspGI	CCWGG	4 cut(s)	52, 213, 516, 675
PspN4I	GGNNCC	2 cut(s)	32, 611
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	382, 493
PvuI	CGATCG	1 cut(s)	692
RruI	TCGCGA	1 cut(s)	833
RsaI	GTAC	2 cut(s)	15, 197
RsaNI	GTAC	2 cut(s)	14, 196
RseI	CAYNNNNRTG	1 cut(s)	461
SapI	GCTCTTC	2 cut(s)	32, 76
SaqAI	TTAA	4 cut(s)	85, 164, 307, 818
SatI	GCNGC	3 cut(s)	203, 335, 577
Sau3AI	GATC	4 cut(s)	382, 493, 689, 756
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	4 cut(s)	54, 215, 518, 677
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	9 cut(s)	32, 195, 204, 543, 548, 607, 634, 809, 831
SfaNI	GCATC	4 cut(s)	218, 245, 321, 609
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	5 cut(s)	264, 410, 680, 773, 820
SsiI	CCGC	2 cut(s)	81, 143
SspMI	CTAG	1 cut(s)	538
StyD4I	CCNGG	4 cut(s)	52, 213, 516, 675
TaaI	ACNGT	1 cut(s)	18
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	3 cut(s)	74, 688, 692
TasI	AATT	5 cut(s)	264, 410, 680, 773, 820
TatI	WGTACW	1 cut(s)	195
Tru1I	TTAA	4 cut(s)	85, 164, 307, 818
Tru9I	TTAA	4 cut(s)	85, 164, 307, 818
TscAI	CASTG	2 cut(s)	132, 446
TseI	GCWGC	3 cut(s)	202, 334, 576
TspDTI	ATGAA	3 cut(s)	254, 649, 688
TspRI	CASTG	2 cut(s)	132, 446
Van91I	CCANNNNNTGG	1 cut(s)	127
XapI	RAATTY	4 cut(s)	410, 680, 773, 820
XcmI	CCANNNNNNNNNTGG	2 cut(s)	270, 493
XmiI	GTMKAC	1 cut(s)	634
XspI	CTAG	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.