FvH4_4g05160

Ammonium transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
4443841 .. 4445860
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05160.t1

Sequence Viewer

Length: 1497 bp
ATGGCGGCGTCTTGCTCGGCTTCCCAGCTGGCCCAGCTCCTCGGCCCAAACGGCACCGCCGCCGCCACCTTCATCTGCGACCAGTTCTCCGCGGTCGACTCCAAGTTCATCGACACCTCCTACGCCGTGGACACCACCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTAGACGCCGCCGCCGGCGGCCTCTTCTACTACCTCTTCGGCTTCGCCTTCGCCTTCGGCGGCCCCTCCAACGGCTTCATCGGCCGCCACTTCTTCGGCCTCAAGGAAGTCCCCAACATCTCCTTCGACTACAGCCACTTCCTCTACCAGTGGGCCTTCGCCATCGCCGCCGCCGGCATCACCTCCGGCTCCATCGCCGAGCGAACTCAGTTCGTCGCTTACTTAATCTACTCCTCTTTTCTCACCGGCTTCGTCTACCCCGTCGTCTCCCACTGGATCTGGTCCCCCGACGGCTGGGCCAGCGCGTTCAACACCGGCAACCTCCTCTTCGGCTCCGGCGTCATCGACTTCGCCGGCTCCGGCGTCGTCCACATGGTCGGAGGAATCGCCGGACTCTGGGGAGCCTTCATCGAAGGTCCCAGGATCGGCCGGTTTGACCATTCCGGTCGCTCCGTCGCGCTCCGCGGCCACAGCGCCACCCTCGTCGTTCTCGGCACATTCCTCCTGTGGTTCGGCTGGTACGGCTTCAACCCTGGCTCGTTTAACAAGATCCTAGTCTCCTACGGCGGCGCCTCCTCCTACTACGGCCAGTGGTCCGCCGTCGGAAGAACCGCCGTCACCACCACCCTCGCCGGATGCACCGCCGCGCTGACGACTCTCTTCGGGAAGCGCATCCTCTCCGGCCACTGGAACGTCACCGACGTCTGCAACGGCCTACTCGGCGGCTTCGCCGCCATCACCGGCGGCTGCTCCGTCGTCGAGCCATGGGCCGCGATCATCTGCGGCTTCGTCGCTGCCGTCGTGTTGGTCTCGTGCAACAAGCTCGCCGAGAAGATGAGATACGACGACCCGTTGGAGGCGGCCCAGCTCCACGGCGGGTGCGGCGCGTGGGGGATCATATTCACCGCGCTTTTTGCGAGCGAGAAGTACGTGAACGAAGTGTACCCGGGCAAACCGGGTCGGCCATATGGGCTTTTCATGGGCGGCGGTGGCAGGCTGTTGGGGGCCCACGTGGTGCAGATTCTGGTGATAATCGGGTGGGTCAGCGCCACCATGGGTCCTCTGTTCTTCATTCTCCACAAGATGAATCTGCTGAGGATTTCAGCGGAGGATGAAATGGCGGGTATGGATATGACCCGGCACGGCGGGTTTGCTTACGTCTACCATGACGAAGACGACTCGGTTAAACCCACCGCGATTCAACTTAGGAAAATTGAGCCTAGTTCTTCCACACCTACTTCCGTTTAA

Protein Analysis

499

Amino Acids

53.14

Weight (kDa)

6.62

Isoelectric Point (pI)

27.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 47 - 469 2e-130 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011741)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 954
AccB1I GGYRCC 2 cut(s) 53, 818
AccI GTMKAC 3 cut(s) 96, 504, 1410
AclWI GGATC 4 cut(s) 533, 680, 793, 1151
AcoI YGGCCR 6 cut(s) 331, 676, 715, 835, 931, 1211
AcvI CACGTG 1 cut(s) 1261
AcyI GRCGYC 6 cut(s) 8, 255, 588, 612, 819, 951
AdeI CACNNNGTG 1 cut(s) 1264
AfaI GTAC 3 cut(s) 770, 1178, 1193
AfiI CCNNNNNNNGG 6 cut(s) 320, 543, 645, 674, 936, 1105
AgsI TTSAA 3 cut(s) 559, 778, 1451
AjnI CCWGG 2 cut(s) 668, 781
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 5 cut(s) 28, 37, 178, 1072, 1117
AluI AGCT 5 cut(s) 28, 37, 178, 1072, 1117
Alw26I GTCTC 3 cut(s) 520, 811, 1063
AlwI GGATC 4 cut(s) 533, 680, 793, 1151
AlwNI CAGNNNCTG 1 cut(s) 1273
Ama87I CYCGRG 1 cut(s) 1195
ApaI GGGCCC 1 cut(s) 1258
ApeKI GCWGC 3 cut(s) 175, 996, 1043
AsuC2I CCSGG 4 cut(s) 1196, 1197, 1206, 1387
AsuHPI GGTGA 8 cut(s) 232, 421, 484, 859, 937, 979, 1144, 1288
AvaI CYCGRG 1 cut(s) 1195
AvaII GGWCC 4 cut(s) 531, 665, 843, 1307
BaeGI GKGCMC 1 cut(s) 1258
BanI GGYRCC 2 cut(s) 53, 818
BanII GRGCYC 1 cut(s) 1258
BarI GAAGNNNNNNTAC 2 cut(s) 1073, 1105
BauI CACGAG 1 cut(s) 1060
BbrPI CACGTG 1 cut(s) 1261
BbsI GAAGAC 2 cut(s) 157, 1428
BbvCI CCTCAGC 1 cut(s) 1343
BbvI GCAGC 3 cut(s) 187, 983, 1030
BccI CCATC 3 cut(s) 419, 449, 992
BcgI CGANNNNNNTGC 2 cut(s) 1054, 1088
BciT130I CCWGG 2 cut(s) 670, 783
BcnI CCSGG 4 cut(s) 1196, 1197, 1206, 1387
BcoDI GTCTC 3 cut(s) 520, 811, 1063
BfaI CTAG 3 cut(s) 251, 803, 1470
BfmI CTRYAG 1 cut(s) 379
BfoI RGCGCY 3 cut(s) 726, 822, 1299
BglI GCCNNNNNGGC 3 cut(s) 51, 969, 1219
Bme1390I CCNGG 6 cut(s) 670, 783, 1196, 1197, 1206, 1387
Bme18I GGWCC 4 cut(s) 531, 665, 843, 1307
BmeT110I CYCGRG 1 cut(s) 1195
BmrFI CCNGG 6 cut(s) 670, 783, 1196, 1197, 1206, 1387
BmsI GCATC 3 cut(s) 435, 875, 930
BpiI GAAGAC 2 cut(s) 157, 1428
Bpu10I CCTNAGC 1 cut(s) 1343
BpuEI CTTGAG 1 cut(s) 335
BpuMI CCSGG 4 cut(s) 1196, 1197, 1206, 1387
BsaAI YACGTR 2 cut(s) 1180, 1261
BsaHI GRCGYC 6 cut(s) 8, 255, 588, 612, 819, 951
BsaI GGTCTC 1 cut(s) 1063
BsaWI WCCGGW 1 cut(s) 692
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 6 cut(s) 320, 543, 645, 674, 936, 1105
Bse118I RCCGGY 8 cut(s) 200, 263, 422, 494, 563, 602, 678, 989
Bse1I ACTGG 5 cut(s) 82, 397, 527, 838, 941
BseBI CCWGG 2 cut(s) 670, 783
BseGI GGATG 3 cut(s) 890, 921, 1366
BseLI CCNNNNNNNGG 6 cut(s) 320, 543, 645, 674, 936, 1105
BseMII CTCAG 2 cut(s) 470, 1334
BseNI ACTGG 5 cut(s) 82, 397, 527, 838, 941
BseRI GAGGAG 5 cut(s) 29, 134, 472, 563, 814
BseSI GKGCMC 1 cut(s) 1258
BseX3I CGGCCG 2 cut(s) 331, 676
BseXI GCAGC 3 cut(s) 187, 983, 1030
BseYI CCCAGC 4 cut(s) 24, 33, 543, 1113
BsgI GTGCAG 1 cut(s) 1286
Bsh1285I CGRYCG 4 cut(s) 96, 334, 679, 697
BshNI GGYRCC 2 cut(s) 53, 818
BsiEI CGRYCG 4 cut(s) 96, 334, 679, 697
BsiHKCI CYCGRG 1 cut(s) 1195
BslFI GGGAC 3 cut(s) 344, 517, 651
BslI CCNNNNNNNGG 6 cut(s) 320, 543, 645, 674, 936, 1105
BsmAI GTCTC 3 cut(s) 520, 811, 1063
BsmBI CGTCTC 1 cut(s) 520
BsmFI GGGAC 3 cut(s) 344, 517, 651
Bso31I GGTCTC 1 cut(s) 1063
BsoBI CYCGRG 1 cut(s) 1195
Bsp120I GGGCCC 1 cut(s) 1254
Bsp1286I GDGCHC 1 cut(s) 1258
Bsp143I GATC 5 cut(s) 525, 672, 798, 1023, 1143
Bsp19I CCATGG 2 cut(s) 1013, 1302
BspCNI CTCAG 2 cut(s) 469, 1335
BspPI GGATC 4 cut(s) 533, 680, 793, 1151
BspT107I GGYRCC 2 cut(s) 53, 818
BspTNI GGTCTC 1 cut(s) 1063
BsrFI RCCGGY 8 cut(s) 200, 263, 422, 494, 563, 602, 678, 989
BsrI ACTGG 5 cut(s) 82, 397, 527, 838, 941
BssAI RCCGGY 8 cut(s) 200, 263, 422, 494, 563, 602, 678, 989
BssMI GATC 5 cut(s) 525, 672, 798, 1023, 1143
BssNI GRCGYC 6 cut(s) 8, 255, 588, 612, 819, 951
BssSI CACGAG 1 cut(s) 1060
BssT1I CCWWGG 2 cut(s) 1013, 1302
Bst2BI CACGAG 1 cut(s) 1060
Bst2UI CCWGG 2 cut(s) 670, 783
Bst6I CTCTTC 5 cut(s) 152, 278, 290, 581, 914
BstACI GRCGYC 6 cut(s) 8, 255, 588, 612, 819, 951
BstBAI YACGTR 2 cut(s) 1180, 1261
BstC8I GCNNGC 9 cut(s) 30, 202, 265, 424, 550, 604, 1074, 1168, 1244
BstDEI CTNAG 3 cut(s) 456, 1343, 1454
BstDSI CCRYGG 6 cut(s) 90, 126, 712, 1013, 1120, 1302
BstF5I GGATG 3 cut(s) 890, 921, 1366
BstH2I RGCGCY 3 cut(s) 726, 822, 1299
BstKTI GATC 5 cut(s) 528, 675, 801, 1026, 1146
BstMAI GTCTC 3 cut(s) 520, 811, 1063
BstMBI GATC 5 cut(s) 525, 672, 798, 1023, 1143
BstMCI CGRYCG 4 cut(s) 96, 334, 679, 697
BstNI CCWGG 2 cut(s) 670, 783
BstSCI CCNGG 6 cut(s) 668, 781, 1194, 1195, 1204, 1385
BstSFI CTRYAG 1 cut(s) 379
BstSLI GKGCMC 1 cut(s) 1258
BstV1I GCAGC 3 cut(s) 187, 983, 1030
BstV2I GAAGAC 2 cut(s) 157, 1428
BstX2I RGATCY 2 cut(s) 525, 798
BstYI RGATCY 2 cut(s) 525, 798
BstZI CGGCCG 2 cut(s) 331, 676
BtgI CCRYGG 6 cut(s) 90, 126, 712, 1013, 1120, 1302
BtgZI GCGATG 2 cut(s) 397, 427
BtsCI GGATG 3 cut(s) 890, 921, 1366
BtsIMutI CAGTG 4 cut(s) 404, 520, 845, 934
Cac8I GCNNGC 9 cut(s) 30, 202, 265, 424, 550, 604, 1074, 1168, 1244
CaiI CAGNNNCTG 1 cut(s) 1273
Cfr10I RCCGGY 8 cut(s) 200, 263, 422, 494, 563, 602, 678, 989
Cfr42I CCGCGG 2 cut(s) 93, 715
Cfr9I CCCGGG 1 cut(s) 1195
CseI GACGC 3 cut(s) 263, 577, 601
Csp6I GTAC 3 cut(s) 769, 1177, 1192
CviAII CATG 9 cut(s) 172, 190, 226, 235, 622, 1014, 1228, 1303, 1415
CviQI GTAC 3 cut(s) 769, 1177, 1192
DdeI CTNAG 3 cut(s) 456, 1343, 1454
DinI GGCGCC 1 cut(s) 820
DpnI GATC 5 cut(s) 527, 674, 800, 1025, 1145
DpnII GATC 5 cut(s) 525, 672, 798, 1023, 1143
DraIII CACNNNGTG 1 cut(s) 1264
EaeI YGGCCR 6 cut(s) 331, 676, 715, 835, 931, 1211
EagI CGGCCG 2 cut(s) 331, 676
Eam1104I CTCTTC 5 cut(s) 152, 278, 290, 581, 914
EarI CTCTTC 5 cut(s) 152, 278, 290, 581, 914
EciI GGCGGA 2 cut(s) 142, 835
EclXI CGGCCG 2 cut(s) 331, 676
Eco130I CCWWGG 2 cut(s) 1013, 1302
Eco24I GRGCYC 1 cut(s) 1258
Eco31I GGTCTC 1 cut(s) 1063
Eco47I GGWCC 4 cut(s) 531, 665, 843, 1307
Eco52I CGGCCG 2 cut(s) 331, 676
Eco72I CACGTG 1 cut(s) 1261
Eco88I CYCGRG 1 cut(s) 1195
EcoO109I RGGNCCY 3 cut(s) 665, 1254, 1307
EcoRII CCWGG 2 cut(s) 668, 781
EcoT14I CCWWGG 2 cut(s) 1013, 1302
EcoT38I GRGCYC 1 cut(s) 1258
EgeI GGCGCC 1 cut(s) 820
EheI GGCGCC 1 cut(s) 820
ErhI CCWWGG 2 cut(s) 1013, 1302
Esp3I CGTCTC 1 cut(s) 520
FaeI CATG 9 cut(s) 175, 193, 229, 238, 625, 1017, 1231, 1306, 1418
FaqI GGGAC 3 cut(s) 344, 517, 651
FatI CATG 9 cut(s) 171, 189, 225, 234, 621, 1013, 1227, 1302, 1414
FauI CCCGC 3 cut(s) 1118, 1363, 1388
FauNDI CATATG 1 cut(s) 1216
FblI GTMKAC 3 cut(s) 96, 504, 1410
FokI GGATG 3 cut(s) 897, 908, 1373
FriOI GRGCYC 1 cut(s) 1258
FspBI CTAG 3 cut(s) 251, 803, 1470
GsaI CCCAGC 4 cut(s) 28, 37, 547, 1117
HaeII RGCGCY 3 cut(s) 726, 822, 1299
HgaI GACGC 3 cut(s) 263, 577, 601
Hin1I GRCGYC 6 cut(s) 8, 255, 588, 612, 819, 951
Hin1II CATG 9 cut(s) 175, 193, 229, 238, 625, 1017, 1231, 1306, 1418
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 8 cut(s) 98, 633, 642, 904, 1270, 1336, 1427, 1447
HphI GGTGA 8 cut(s) 232, 421, 484, 859, 937, 979, 1144, 1288
Hpy166II GTNNAC 7 cut(s) 97, 130, 505, 619, 1183, 1192, 1411
Hpy188I TCNGA 2 cut(s) 629, 854
Hpy188III TCNNGA 1 cut(s) 913
Hpy8I GTNNAC 7 cut(s) 97, 130, 505, 619, 1183, 1192, 1411
HpyAV CCTTC 7 cut(s) 79, 307, 313, 382, 415, 656, 664
HpyCH4IV ACGT 6 cut(s) 246, 942, 951, 1179, 1260, 1407
HpyCH4V TGCA 5 cut(s) 175, 888, 957, 1065, 1267
HpyF3I CTNAG 3 cut(s) 456, 1343, 1454
HpySE526I ACGT 6 cut(s) 246, 942, 951, 1179, 1260, 1407
Hsp92I GRCGYC 6 cut(s) 8, 255, 588, 612, 819, 951
Hsp92II CATG 9 cut(s) 175, 193, 229, 238, 625, 1017, 1231, 1306, 1418
KasI GGCGCC 1 cut(s) 818
KroI GCCGGC 4 cut(s) 200, 263, 422, 602
KroNI GCCGGC 4 cut(s) 202, 265, 424, 604
KspI CCGCGG 2 cut(s) 93, 715
Kzo9I GATC 5 cut(s) 525, 672, 798, 1023, 1143
Lsp1109I GCAGC 3 cut(s) 187, 983, 1030
LweI GCATC 3 cut(s) 435, 875, 930
MaeI CTAG 3 cut(s) 251, 803, 1470
MaeII ACGT 6 cut(s) 246, 942, 951, 1179, 1260, 1407
MaeIII GTNAC 2 cut(s) 865, 943
MalI GATC 5 cut(s) 527, 674, 800, 1025, 1145
MboI GATC 5 cut(s) 525, 672, 798, 1023, 1143
MflI RGATCY 2 cut(s) 525, 798
MhlI GDGCHC 1 cut(s) 1258
MluCI AATT 1 cut(s) 1461
Mly113I GGCGCC 1 cut(s) 819
MlyI GAGTC 4 cut(s) 92, 636, 898, 1421
MmeI TCCRAC 4 cut(s) 342, 607, 832, 1083
MreI CGCCGGCG 1 cut(s) 263
MroNI GCCGGC 4 cut(s) 200, 263, 422, 602
MseI TTAA 4 cut(s) 473, 792, 1434, 1495
MspA1I CMGCKG 4 cut(s) 28, 92, 714, 1355
MspR9I CCNGG 6 cut(s) 670, 783, 1196, 1197, 1206, 1387
MvaI CCWGG 2 cut(s) 670, 783
NaeI GCCGGC 4 cut(s) 202, 265, 424, 604
NarI GGCGCC 1 cut(s) 819
NciI CCSGG 4 cut(s) 1196, 1197, 1206, 1387
NcoI CCATGG 2 cut(s) 1013, 1302
NdeI CATATG 1 cut(s) 1216
NdeII GATC 5 cut(s) 525, 672, 798, 1023, 1143
NgoMIV GCCGGC 4 cut(s) 200, 263, 422, 602
NlaIII CATG 9 cut(s) 175, 193, 229, 238, 625, 1017, 1231, 1306, 1418
NmeAIII GCCGAG 6 cut(s) 21, 159, 472, 720, 948, 1102
NmuCI GTSAC 2 cut(s) 865, 943
PcsI WCGNNNNNNNCGW 5 cut(s) 507, 585, 948, 1044, 1047
PdiI GCCGGC 4 cut(s) 202, 265, 424, 604
PfeI GAWTC 4 cut(s) 633, 1270, 1336, 1447
PleI GAGTC 4 cut(s) 92, 636, 898, 1421
PluTI GGCGCC 1 cut(s) 822
PmaCI CACGTG 1 cut(s) 1261
PmlI CACGTG 1 cut(s) 1261
PpsI GAGTC 4 cut(s) 92, 636, 898, 1421
Ppu21I YACGTR 2 cut(s) 1180, 1261
PpuMI RGGWCCY 2 cut(s) 665, 1307
Psp5II RGGWCCY 2 cut(s) 665, 1307
Psp6I CCWGG 2 cut(s) 668, 781
PspCI CACGTG 1 cut(s) 1261
PspFI CCCAGC 4 cut(s) 24, 33, 543, 1113
PspGI CCWGG 2 cut(s) 668, 781
PspOMI GGGCCC 1 cut(s) 1254
PspPPI RGGWCCY 2 cut(s) 665, 1307
PsrI GAACNNNNNNTAC 2 cut(s) 1175, 1207
PstNI CAGNNNCTG 1 cut(s) 1273
PsuI RGATCY 2 cut(s) 525, 798
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 3 cut(s) 770, 1178, 1193
RsaNI GTAC 3 cut(s) 769, 1177, 1192
SacII CCGCGG 2 cut(s) 93, 715
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 473, 792, 1434, 1495
Sau3AI GATC 5 cut(s) 525, 672, 798, 1023, 1143
SchI GAGTC 4 cut(s) 92, 636, 898, 1421
ScrFI CCNGG 6 cut(s) 670, 783, 1196, 1197, 1206, 1387
SduI GDGCHC 1 cut(s) 1258
SfaNI GCATC 3 cut(s) 435, 875, 930
SfcI CTRYAG 1 cut(s) 379
SfoI GGCGCC 1 cut(s) 820
Sfr303I CCGCGG 2 cut(s) 93, 715
SgrAI CRCCGGYG 2 cut(s) 263, 989
SgrBI CCGCGG 2 cut(s) 93, 715
SinI GGWCC 4 cut(s) 531, 665, 843, 1307
SmaI CCCGGG 1 cut(s) 1197
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 1 cut(s) 1461
SspDI GGCGCC 1 cut(s) 818
SspMI CTAG 3 cut(s) 251, 803, 1470
StyD4I CCNGG 6 cut(s) 668, 781, 1194, 1195, 1204, 1385
StyI CCWWGG 2 cut(s) 1013, 1302
TaiI ACGT 6 cut(s) 249, 945, 954, 1182, 1263, 1410
TaqI TCGA 6 cut(s) 96, 111, 375, 594, 660, 1008
TasI AATT 1 cut(s) 1461
TfiI GAWTC 4 cut(s) 633, 1270, 1336, 1447
Tru1I TTAA 4 cut(s) 473, 792, 1434, 1495
Tru9I TTAA 4 cut(s) 473, 792, 1434, 1495
TscAI CASTG 4 cut(s) 404, 527, 845, 941
TseFI GTSAC 2 cut(s) 865, 943
TseI GCWGC 3 cut(s) 175, 996, 1043
Tsp45I GTSAC 2 cut(s) 865, 943
TspDTI ATGAA 9 cut(s) 61, 97, 242, 316, 646, 1216, 1309, 1349, 1377
TspGWI ACGGA 4 cut(s) 196, 691, 991, 1480
TspMI CCCGGG 1 cut(s) 1195
TspRI CASTG 4 cut(s) 404, 527, 845, 941
VpaK11BI GGWCC 4 cut(s) 531, 665, 843, 1307
XmaI CCCGGG 1 cut(s) 1195
XmiI GTMKAC 3 cut(s) 96, 504, 1410
XspI CTAG 3 cut(s) 251, 803, 1470
ZraI GACGTC 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.