Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011741

Physical Location & Seq

Genomic Coordinates Forward (+)

43241589 .. 43244098

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0352700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTAGGCCAGGTCCTGGTGGGATGCATACCCATCAGTGGCGCCTTGAGTTACAGTAATTCGATACGACCATGTCCCAGAGGAAGAGGAGGAGGAGGAGGAGGCAGAGCTCGGCGGATTACGGCATCATCATCAGTAAACGGCGGCCACCAGAATCACTACGGTGTTCTGGGCCTTACACGCTATGCCACCTCCGCCGATATCAAGAGGGCTTTTCGCCTTCTCGCTCGCAAGTATCATCCTGATGTTAGCAAGGATTCTCAAGCTGGACAAGTATTCAAGAGCATCCGTCAAGCATATGAGATACTATCTAATGAAGCAACCAGGATTGAGTATGACCAAGAACTTAAATTTCAGAAAGAGACTGGTAGACAATATAGAGGAAAACGGAACGACAGTCCTGAATTCGAAGATGGTGTAAGGATCTATAAGTGGGCTGAGGTGAGGCAGAAGATTAAACGTGAGAGACAATGGGAACATTATAATGTAAATGGAGAGACATCATATGGTAAACCAGATGAAGCATCTGAAGGAGAACCATCCCAGGAGAGAGGTTCCTTCAGCGAAGTGCTTAGATCTGCCTTTGTATCTCTGTTTTTATTGCAGACGTTTGGATCCCGTTTGTCTCTCACTTTTAGTAGTTTGATGGCCTTGTTTGATAGGAAGTTGGATGCTGGATATAAGATTGGTTACGTCATTGCATGGATCTTGGGTGGGAGGGGTGGTATCTTGCTCACTCTGTGTTTATCTTTTGCAAGTTGGGTTTGTGGAAAAACCAGCAGCAGTATGGTTGCTCTGGTGGTGGTAGCCATGTGGGTTGGCTCCAATCTTGCAAGATTTGCACCACTTCCGCAAGGTGCTCTTCTTACACTCCTCTACATGTCTATCAAGCTACAAGGTGATTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

303

Amino Acids

33.54

Weight (kDa)

9.71

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	52 - 113	1.6e-19	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24290 AT3G24300 AT4G13510
fragaria_vesca	FvH4_4g05160
malus_domestica	MD13G1225400.v1.1 MD16G1230500.v1.1
prunus_persica	Prupe.1G052400_v2.0.a1
pyrus_communis	pycom13g19870 pycom13g19880
rosa_chinensis	RchiOBHm_Chr4g0396081
rosa_laevigata	RLG00000009574
rosa_multiflora	Rmu_sc0006325.1_g000013 Rmu_sc0015594.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340880
rosa_rugosa	Rorug03G0352700
rosa_samantha	Rh4BG064000 Rh4CG070500 Rh4DG060800
rosa_wichuraiana	Rw4G005300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	370
AciI	CCGC	4 cut(s)	115, 144, 195, 851
AclWI	GGATC	4 cut(s)	431, 609, 622, 713
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	350, 404
AcuI	CTGAAG	2 cut(s)	544, 549
AcyI	GRCGYC	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	741
AfiI	CCNNNNNNNGG	2 cut(s)	16, 38
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	2 cut(s)	280, 907
AjnI	CCWGG	4 cut(s)	9, 15, 323, 543
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	3 cut(s)	110, 266, 892
AluI	AGCT	3 cut(s)	110, 266, 892
Alw21I	GWGCWC	2 cut(s)	112, 862
Alw26I	GTCTC	4 cut(s)	356, 460, 491, 630
AlwI	GGATC	4 cut(s)	431, 609, 622, 713
AlwNI	CAGNNNCTG	1 cut(s)	16
AoxI	GGCC	4 cut(s)	7, 145, 172, 648
ApeKI	GCWGC	1 cut(s)	780
ApoI	RAATTY	2 cut(s)	350, 404
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	13, 172
AsuHPI	GGTGA	2 cut(s)	454, 911
AsuII	TTCGAA	1 cut(s)	408
AvaII	GGWCC	1 cut(s)	13
BamHI	GGATCC	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	112
Bbv12I	GWGCWC	2 cut(s)	112, 862
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	792
BccI	CCATC	4 cut(s)	41, 407, 547, 640
BceAI	ACGGC	2 cut(s)	138, 157
BciT130I	CCWGG	4 cut(s)	11, 17, 325, 545
BcoDI	GTCTC	4 cut(s)	356, 460, 491, 630
BfoI	RGCGCY	1 cut(s)	45
BglII	AGATCT	1 cut(s)	575
BisI	GCNGC	2 cut(s)	145, 781
BlsI	GCNGC	2 cut(s)	146, 782
Bme1390I	CCNGG	4 cut(s)	11, 17, 325, 545
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	2 cut(s)	13, 172
BmiI	GGNNCC	4 cut(s)	43, 556, 616, 823
BmrFI	CCNGG	4 cut(s)	11, 17, 325, 545
BmsI	GCATC	5 cut(s)	14, 134, 294, 533, 661
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	67, 246
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	543
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 38
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	696
BseBI	CCWGG	4 cut(s)	11, 17, 325, 545
BseDI	CCNNGG	1 cut(s)	543
BseGI	GGATG	5 cut(s)	29, 238, 285, 539, 676
BseLI	CCNNNNNNNGG	2 cut(s)	16, 38
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	6 cut(s)	102, 105, 108, 111, 114, 863
BseXI	GCAGC	1 cut(s)	792
BshFI	GGCC	4 cut(s)	9, 147, 174, 650
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	112, 862
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	16, 38
BsmAI	GTCTC	4 cut(s)	356, 460, 491, 630
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	4 cut(s)	9, 147, 174, 650
Bsp119I	TTCGAA	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	112, 862
Bsp143I	GATC	4 cut(s)	423, 575, 614, 705
BspACI	CCGC	4 cut(s)	115, 144, 195, 851
BspANI	GGCC	4 cut(s)	9, 147, 174, 650
BspCNI	CTCAG	1 cut(s)	430
BspLI	GGNNCC	4 cut(s)	43, 556, 616, 823
BspPI	GGATC	4 cut(s)	431, 609, 622, 713
BspQI	GCTCTTC	1 cut(s)	867
BspT104I	TTCGAA	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	696
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	543
BssMI	GATC	4 cut(s)	423, 575, 614, 705
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	4 cut(s)	11, 17, 325, 545
Bst4CI	ACNGT	3 cut(s)	56, 164, 398
Bst6I	CTCTTC	2 cut(s)	79, 867
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstBI	TTCGAA	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	438, 572
BstF5I	GGATG	5 cut(s)	29, 238, 285, 539, 676
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	4 cut(s)	426, 578, 617, 708
BstMAI	GTCTC	4 cut(s)	356, 460, 491, 630
BstMBI	GATC	4 cut(s)	423, 575, 614, 705
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 194, 839
BstNI	CCWGG	4 cut(s)	11, 17, 325, 545
BstNSI	RCATGY	1 cut(s)	883
BstSCI	CCNGG	4 cut(s)	9, 15, 323, 543
BstV1I	GCAGC	1 cut(s)	792
BstX2I	RGATCY	4 cut(s)	423, 575, 614, 705
BstYI	RGATCY	4 cut(s)	423, 575, 614, 705
BsuRI	GGCC	4 cut(s)	9, 147, 174, 650
BtsCI	GGATG	5 cut(s)	29, 238, 285, 539, 676
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	16
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	13, 172
CviAII	CATG	4 cut(s)	72, 702, 811, 880
DdeI	CTNAG	2 cut(s)	438, 572
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	4 cut(s)	425, 577, 616, 707
DpnII	GATC	4 cut(s)	423, 575, 614, 705
DraIII	CACNNNGTG	1 cut(s)	741
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	79, 867
EarI	CTCTTC	2 cut(s)	79, 867
EciI	GGCGGA	2 cut(s)	130, 184
Ecl136II	GAGCTC	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	112
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	544, 549
EcoICRI	GAGCTC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	4 cut(s)	9, 15, 323, 543
EcoRV	GATATC	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	4 cut(s)	75, 705, 814, 883
FalI	AAGNNNNNCTT	2 cut(s)	846, 878
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	4 cut(s)	71, 701, 810, 879
FauNDI	CATATG	2 cut(s)	298, 505
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	145, 781
FokI	GGATG	5 cut(s)	36, 225, 272, 526, 683
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	2 cut(s)	145, 781
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	145, 781
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	4 cut(s)	9, 147, 174, 650
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	4 cut(s)	75, 705, 814, 883
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	154, 257
HphI	GGTGA	2 cut(s)	454, 911
Hpy166II	GTNNAC	3 cut(s)	139, 371, 512
Hpy188I	TCNGA	2 cut(s)	357, 529
Hpy188III	TCNNGA	4 cut(s)	205, 242, 280, 401
Hpy8I	GTNNAC	3 cut(s)	139, 371, 512
HpyAV	CCTTC	3 cut(s)	230, 524, 568
HpyCH4III	ACNGT	3 cut(s)	56, 164, 398
HpyCH4IV	ACGT	3 cut(s)	460, 608, 693
HpyCH4V	TGCA	6 cut(s)	27, 604, 701, 755, 833, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 194, 839
HpyF3I	CTNAG	2 cut(s)	438, 572
HpySE526I	ACGT	3 cut(s)	460, 608, 693
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	75, 705, 814, 883
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	423, 575, 614, 705
LguI	GCTCTTC	1 cut(s)	867
LmnI	GCTCC	1 cut(s)	827
Lsp1109I	GCAGC	1 cut(s)	792
LweI	GCATC	5 cut(s)	14, 134, 294, 533, 661
MaeII	ACGT	3 cut(s)	460, 608, 693
MaeIII	GTNAC	2 cut(s)	50, 689
MalI	GATC	4 cut(s)	425, 577, 616, 707
MboI	GATC	4 cut(s)	423, 575, 614, 705
MboII	GAAGA	4 cut(s)	96, 422, 463, 854
MflI	RGATCY	4 cut(s)	423, 575, 614, 705
MhlI	GDGCHC	2 cut(s)	112, 862
MluCI	AATT	4 cut(s)	58, 350, 404, 907
Mly113I	GGCGCC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	648
Mph1103I	ATGCAT	1 cut(s)	29
MseI	TTAA	3 cut(s)	348, 456, 910
MslI	CAYNNNNRTG	3 cut(s)	162, 243, 483
MspR9I	CCNGG	4 cut(s)	11, 17, 325, 545
MvaI	CCWGG	4 cut(s)	11, 17, 325, 545
MwoI	GCNNNNNNNGC	3 cut(s)	180, 194, 839
NarI	GGCGCC	1 cut(s)	42
NdeI	CATATG	2 cut(s)	298, 505
NdeII	GATC	4 cut(s)	423, 575, 614, 705
NlaIII	CATG	4 cut(s)	75, 705, 814, 883
NlaIV	GGNNCC	4 cut(s)	43, 556, 616, 823
NmeAIII	GCCGAG	1 cut(s)	91
NsiI	ATGCAT	1 cut(s)	29
NspI	RCATGY	1 cut(s)	883
NspV	TTCGAA	1 cut(s)	408
OliI	CACNNNNGTG	1 cut(s)	162
PciI	ACATGT	1 cut(s)	879
PciSI	GCTCTTC	1 cut(s)	867
PfeI	GAWTC	2 cut(s)	154, 257
PflFI	GACNNNGTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	146, 782
PluTI	GGCGCC	1 cut(s)	45
PpuMI	RGGWCCY	1 cut(s)	13
PscI	ACATGT	1 cut(s)	879
PsiI	TTATAA	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	13
Psp6I	CCWGG	4 cut(s)	9, 15, 323, 543
PspGI	CCWGG	4 cut(s)	9, 15, 323, 543
PspN4I	GGNNCC	4 cut(s)	43, 556, 616, 823
PspPI	GGNCC	2 cut(s)	13, 172
PspPPI	RGGWCCY	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	16
PsuI	RGATCY	4 cut(s)	423, 575, 614, 705
PsyI	GACNNNGTC	1 cut(s)	72
RseI	CAYNNNNRTG	3 cut(s)	162, 243, 483
SacI	GAGCTC	1 cut(s)	112
SapI	GCTCTTC	1 cut(s)	867
SaqAI	TTAA	3 cut(s)	348, 456, 910
SatI	GCNGC	2 cut(s)	145, 781
Sau3AI	GATC	4 cut(s)	423, 575, 614, 705
Sau96I	GGNCC	2 cut(s)	13, 172
ScrFI	CCNGG	4 cut(s)	11, 17, 325, 545
SduI	GDGCHC	2 cut(s)	112, 862
SfaNI	GCATC	5 cut(s)	14, 134, 294, 533, 661
SfoI	GGCGCC	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	408
SinI	GGWCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	3 cut(s)	162, 243, 483
SmlI	CTYRAG	2 cut(s)	46, 261
SmoI	CTYRAG	2 cut(s)	46, 261
Sse9I	AATT	4 cut(s)	58, 350, 404, 907
SsiI	CCGC	4 cut(s)	115, 144, 195, 851
SspDI	GGCGCC	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	4 cut(s)	9, 15, 323, 543
TaaI	ACNGT	3 cut(s)	56, 164, 398
TaiI	ACGT	3 cut(s)	463, 611, 696
TaqI	TCGA	2 cut(s)	62, 408
TasI	AATT	4 cut(s)	58, 350, 404, 907
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	154, 257
Tru1I	TTAA	3 cut(s)	348, 456, 910
Tru9I	TTAA	3 cut(s)	348, 456, 910
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	1 cut(s)	780
TspDTI	ATGAA	2 cut(s)	330, 534
TspGWI	ACGGA	2 cut(s)	278, 403
TspRI	CASTG	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	72
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	2 cut(s)	350, 404
XceI	RCATGY	1 cut(s)	883
XcmI	CCANNNNNNNNNTGG	1 cut(s)	784
XmiI	GTMKAC	1 cut(s)	370
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.