Rw4G005300

Ammonium transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
10726751 .. 10727895
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G005300.1

Sequence Viewer

Length: 1116 bp
ATGGCGTCTCCGTCCTGCTCGGCTTCAGAGCTGGCCCAACTCCTGGGCCCAAACACCACCGCCGCCGCCACCTTCATCTGCGACAAATTCTCCGCCACCTCCTACGCCGTCGACACCACCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCAGCCGGCGGCCTCTTCTACTACCTCTTCGGCTTCGCCTTCGCCTTCGGCGGCCCCTCCAACGGCTTCATCGGCCGCCACTTCTTCGGCCTCAAGGAAGTCCCCAACTCCGACTTCGACTACAGCAACTTCCTCTACCAATGGGCCTTCGCCATCGCCGCCGCCGGCATCACCTCCGGCTCCATCGCCGAGCGGACTCAGTTCGTCGCCTACTTAATCTACTCCTCCTTCCTCACCGGCTTCGTCTACCCCGTCGTCTCCCACTGGATCTGGTCCGCCGACGGCTGGGCCAGCGCCTTCAACTCCGGTAACCTCCTGTTCGGCTCCGGCGTCATCGACTTCGCCGGCTCCGGCGTCGTCCACATGGTCGGAGGCATCGCCGGCCTCTGGGGAGCTTATATCGAAGGTCCGAGAATCGGCCGGTTCGACCATTCCGGTCGCTCCGTCGCTCTCCGAGGCCACAGCGCCACCCTCGTCGTTCTCGGCACTTTCCTCCTCTGGTTCGGGTGGTACGGGTTCAACCCGGGTTCGTTTAACAAGATCCTAGTCTCCTACGGCGCTGGCTCCTACGGCCAGTGGTCCGCCGTCGGAAGAACCGCCGTCACCACCACTCTCGCCGGCTGCACCGCCGCGCTCACGACTCTCTTCGGGAAGAGAATCCTCTCCGGCCACTGGAACGTCACCGACGTCTGCAACGGCCTCCTCGGCGGCTTCGCTGCCATCACCTCCGGCTGCTCCGTCGTCGAGCCCTGGGCCGCGATCATCTGCGGGTTCGTCGCCGCCGTCAAGGTCAAGTACGACGACCCCTTGGAGGCGGCTCAGCTCCACGGCGGGTGCGGCGTTTATCAGATCTTGATACATTTAACAAGTAAGTAA

Protein Analysis

371

Amino Acids

39.28

Weight (kDa)

7.05

Isoelectric Point (pI)

21.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 41 - 362 1.4e-100 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011741)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 930
AccB7I CCANNNNNTGG 1 cut(s) 43
AccBSI CCGCTC 1 cut(s) 433
AccI GTMKAC 2 cut(s) 111, 486
AccII CGCG 3 cut(s) 195, 872, 998
AclWI GGATC 2 cut(s) 515, 775
AcoI YGGCCR 4 cut(s) 313, 658, 811, 907
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 9
AcyI GRCGYC 5 cut(s) 5, 237, 570, 594, 927
AfaI GTAC 2 cut(s) 752, 1037
AfiI CCNNNNNNNGG 7 cut(s) 43, 302, 525, 627, 656, 912, 1051
AgsI TTSAA 2 cut(s) 541, 760
AjnI CCWGG 2 cut(s) 42, 989
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 4 cut(s) 31, 160, 635, 1063
AluI AGCT 4 cut(s) 31, 160, 635, 1063
Alw26I GTCTC 3 cut(s) 12, 502, 793
AlwI GGATC 2 cut(s) 515, 775
Ama87I CYCGRG 1 cut(s) 763
ApaI GGGCCC 1 cut(s) 50
ApeKI GCWGC 5 cut(s) 157, 242, 861, 956, 972
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 6 cut(s) 182, 197, 536, 707, 800, 874
AsuC2I CCSGG 2 cut(s) 764, 765
AsuHPI GGTGA 6 cut(s) 214, 403, 466, 835, 913, 955
AvaI CYCGRG 1 cut(s) 763
AvaII GGWCC 3 cut(s) 513, 647, 819
BaeGI GKGCMC 1 cut(s) 50
BanII GRGCYC 2 cut(s) 50, 990
BbsI GAAGAC 1 cut(s) 139
BbvI GCAGC 5 cut(s) 169, 254, 848, 943, 959
BccI CCATC 3 cut(s) 401, 431, 968
BciT130I CCWGG 2 cut(s) 44, 991
BcnI CCSGG 2 cut(s) 764, 765
BcoDI GTCTC 3 cut(s) 12, 502, 793
BfaI CTAG 1 cut(s) 785
BfmI CTRYAG 1 cut(s) 361
BfoI RGCGCY 3 cut(s) 537, 708, 801
BglI GCCNNNNNGGC 1 cut(s) 945
BglII AGATCT 1 cut(s) 1089
BlpI GCTNAGC 1 cut(s) 1059
Bme1390I CCNGG 4 cut(s) 44, 764, 765, 991
Bme18I GGWCC 3 cut(s) 513, 647, 819
BmeT110I CYCGRG 1 cut(s) 763
BmiI GGNNCC 7 cut(s) 48, 187, 295, 421, 565, 589, 805
BmrFI CCNGG 4 cut(s) 44, 764, 765, 991
BmsI GCATC 2 cut(s) 417, 624
BpiI GAAGAC 1 cut(s) 139
Bpu1102I GCTNAGC 1 cut(s) 1059
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 2 cut(s) 764, 765
BsaHI GRCGYC 5 cut(s) 5, 237, 570, 594, 927
BsaJI CCNNGG 8 cut(s) 43, 694, 763, 943, 989, 990, 1047, 1066
BsaWI WCCGGW 2 cut(s) 545, 674
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 7 cut(s) 43, 302, 525, 627, 656, 912, 1051
Bse118I RCCGGY 8 cut(s) 182, 245, 404, 476, 584, 620, 660, 857
Bse1I ACTGG 3 cut(s) 509, 814, 917
BseBI CCWGG 2 cut(s) 44, 991
BseDI CCNNGG 8 cut(s) 43, 694, 763, 943, 989, 990, 1047, 1066
BseLI CCNNNNNNNGG 7 cut(s) 43, 302, 525, 627, 656, 912, 1051
BseMII CTCAG 2 cut(s) 452, 1073
BseNI ACTGG 3 cut(s) 509, 814, 917
BseRI GAGGAG 4 cut(s) 116, 454, 725, 932
BseSI GKGCMC 1 cut(s) 50
BseX3I CGGCCG 2 cut(s) 313, 658
BseXI GCAGC 5 cut(s) 169, 254, 848, 943, 959
BseYI CCCAGC 1 cut(s) 525
BsgI GTGCAG 1 cut(s) 847
Bsh1236I CGCG 3 cut(s) 195, 872, 998
Bsh1285I CGRYCG 3 cut(s) 316, 661, 679
BsiEI CGRYCG 3 cut(s) 316, 661, 679
BsiHKCI CYCGRG 1 cut(s) 763
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 7 cut(s) 43, 302, 525, 627, 656, 912, 1051
BsmAI GTCTC 3 cut(s) 12, 502, 793
BsmBI CGTCTC 2 cut(s) 12, 502
BsmFI GGGAC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 763
Bsp120I GGGCCC 1 cut(s) 46
Bsp1286I GDGCHC 2 cut(s) 50, 990
Bsp143I GATC 4 cut(s) 507, 780, 999, 1089
Bsp1720I GCTNAGC 1 cut(s) 1059
BspCNI CTCAG 2 cut(s) 451, 1072
BspFNI CGCG 3 cut(s) 195, 872, 998
BspLI GGNNCC 7 cut(s) 48, 187, 295, 421, 565, 589, 805
BspPI GGATC 2 cut(s) 515, 775
BsrBI CCGCTC 1 cut(s) 433
BsrFI RCCGGY 8 cut(s) 182, 245, 404, 476, 584, 620, 660, 857
BsrI ACTGG 3 cut(s) 509, 814, 917
BssAI RCCGGY 8 cut(s) 182, 245, 404, 476, 584, 620, 660, 857
BssECI CCNNGG 8 cut(s) 43, 694, 763, 943, 989, 990, 1047, 1066
BssMI GATC 4 cut(s) 507, 780, 999, 1089
BssNI GRCGYC 5 cut(s) 5, 237, 570, 594, 927
BssT1I CCWWGG 1 cut(s) 1047
Bst2UI CCWGG 2 cut(s) 44, 991
Bst6I CTCTTC 5 cut(s) 134, 260, 272, 887, 890
BstACI GRCGYC 5 cut(s) 5, 237, 570, 594, 927
BstC8I GCNNGC 9 cut(s) 33, 184, 247, 406, 532, 586, 622, 802, 859
BstDEI CTNAG 2 cut(s) 438, 1059
BstDSI CCRYGG 1 cut(s) 1066
BstEII GGTNACC 1 cut(s) 548
BstFNI CGCG 3 cut(s) 195, 872, 998
BstH2I RGCGCY 3 cut(s) 537, 708, 801
BstHHI GCGC 6 cut(s) 182, 197, 536, 707, 800, 874
BstKTI GATC 4 cut(s) 510, 783, 1002, 1092
BstMAI GTCTC 3 cut(s) 12, 502, 793
BstMBI GATC 4 cut(s) 507, 780, 999, 1089
BstMCI CGRYCG 3 cut(s) 316, 661, 679
BstMWI GCNNNNNNNGC 8 cut(s) 192, 312, 398, 531, 621, 810, 945, 1077
BstNI CCWGG 2 cut(s) 44, 991
BstPI GGTNACC 1 cut(s) 548
BstSCI CCNGG 4 cut(s) 42, 762, 763, 989
BstSFI CTRYAG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 50
BstUI CGCG 3 cut(s) 195, 872, 998
BstV1I GCAGC 5 cut(s) 169, 254, 848, 943, 959
BstV2I GAAGAC 1 cut(s) 139
BstX2I RGATCY 3 cut(s) 507, 780, 1089
BstYI RGATCY 3 cut(s) 507, 780, 1089
BstZI CGGCCG 2 cut(s) 313, 658
BtgI CCRYGG 1 cut(s) 1066
BtgZI GCGATG 3 cut(s) 379, 409, 601
BtsIMutI CAGTG 3 cut(s) 502, 821, 910
Cac8I GCNNGC 9 cut(s) 33, 184, 247, 406, 532, 586, 622, 802, 859
CfoI GCGC 6 cut(s) 182, 197, 536, 707, 800, 874
Cfr10I RCCGGY 8 cut(s) 182, 245, 404, 476, 584, 620, 660, 857
Cfr9I CCCGGG 1 cut(s) 763
CseI GACGC 3 cut(s) 245, 559, 583
Csp6I GTAC 2 cut(s) 751, 1036
CviAII CATG 5 cut(s) 154, 172, 208, 217, 604
CviQI GTAC 2 cut(s) 751, 1036
DdeI CTNAG 2 cut(s) 438, 1059
DpnI GATC 4 cut(s) 509, 782, 1001, 1091
DpnII GATC 4 cut(s) 507, 780, 999, 1089
EaeI YGGCCR 4 cut(s) 313, 658, 811, 907
EagI CGGCCG 2 cut(s) 313, 658
Eam1104I CTCTTC 5 cut(s) 134, 260, 272, 887, 890
EarI CTCTTC 5 cut(s) 134, 260, 272, 887, 890
EciI GGCGGA 4 cut(s) 82, 124, 505, 811
EclXI CGGCCG 2 cut(s) 313, 658
Eco130I CCWWGG 1 cut(s) 1047
Eco24I GRGCYC 2 cut(s) 50, 990
Eco47I GGWCC 3 cut(s) 513, 647, 819
Eco52I CGGCCG 2 cut(s) 313, 658
Eco57I CTGAAG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 763
Eco91I GGTNACC 1 cut(s) 548
EcoO65I GGTNACC 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 42, 989
EcoT14I CCWWGG 1 cut(s) 1047
EcoT38I GRGCYC 2 cut(s) 50, 990
ErhI CCWWGG 1 cut(s) 1047
Esp3I CGTCTC 2 cut(s) 12, 502
FaeI CATG 5 cut(s) 157, 175, 211, 220, 607
FaiI YATR 6 cut(s) 155, 173, 209, 218, 605, 639
FaqI GGGAC 1 cut(s) 326
FatI CATG 5 cut(s) 153, 171, 207, 216, 603
FauI CCCGC 2 cut(s) 1001, 1064
FblI GTMKAC 2 cut(s) 111, 486
FriOI GRGCYC 2 cut(s) 50, 990
FspBI CTAG 1 cut(s) 785
GlaI GCGC 6 cut(s) 181, 196, 535, 706, 799, 873
GsaI CCCAGC 1 cut(s) 529
HaeII RGCGCY 3 cut(s) 537, 708, 801
HgaI GACGC 3 cut(s) 245, 559, 583
HhaI GCGC 6 cut(s) 182, 197, 536, 707, 800, 874
Hin1I GRCGYC 5 cut(s) 5, 237, 570, 594, 927
Hin1II CATG 5 cut(s) 157, 175, 211, 220, 607
Hin6I GCGC 6 cut(s) 180, 195, 534, 705, 798, 872
HinP1I GCGC 6 cut(s) 180, 195, 534, 705, 798, 872
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 4 cut(s) 436, 654, 880, 897
HphI GGTGA 6 cut(s) 214, 403, 466, 835, 913, 955
Hpy166II GTNNAC 3 cut(s) 112, 487, 601
Hpy188I TCNGA 7 cut(s) 28, 352, 611, 651, 695, 830, 1089
Hpy188III TCNNGA 3 cut(s) 877, 889, 1093
Hpy8I GTNNAC 3 cut(s) 112, 487, 601
HpyAV CCTTC 7 cut(s) 82, 289, 295, 397, 478, 547, 638
HpyCH4IV ACGT 3 cut(s) 228, 918, 927
HpyCH4V TGCA 3 cut(s) 157, 864, 933
HpyF10VI GCNNNNNNNGC 8 cut(s) 192, 312, 398, 531, 621, 810, 945, 1077
HpyF3I CTNAG 2 cut(s) 438, 1059
HpySE526I ACGT 3 cut(s) 228, 918, 927
Hsp92I GRCGYC 5 cut(s) 5, 237, 570, 594, 927
Hsp92II CATG 5 cut(s) 157, 175, 211, 220, 607
HspAI GCGC 6 cut(s) 180, 195, 534, 705, 798, 872
KroI GCCGGC 6 cut(s) 182, 245, 404, 584, 620, 857
KroNI GCCGGC 6 cut(s) 184, 247, 406, 586, 622, 859
Kzo9I GATC 4 cut(s) 507, 780, 999, 1089
LmnI GCTCC 9 cut(s) 191, 425, 569, 593, 632, 686, 809, 980, 1068
Lsp1109I GCAGC 5 cut(s) 169, 254, 848, 943, 959
LweI GCATC 2 cut(s) 417, 624
MaeI CTAG 1 cut(s) 785
MaeII ACGT 3 cut(s) 228, 918, 927
MaeIII GTNAC 3 cut(s) 548, 841, 919
MalI GATC 4 cut(s) 509, 782, 1001, 1091
MbiI CCGCTC 1 cut(s) 433
MboI GATC 4 cut(s) 507, 780, 999, 1089
MboII GAAGA 8 cut(s) 121, 139, 247, 259, 316, 843, 877, 904
MflI RGATCY 3 cut(s) 507, 780, 1089
MhlI GDGCHC 2 cut(s) 50, 990
MluCI AATT 1 cut(s) 86
MlyI GAGTC 2 cut(s) 430, 874
MmeI TCCRAC 4 cut(s) 324, 375, 589, 808
MroNI GCCGGC 6 cut(s) 182, 245, 404, 584, 620, 857
MseI TTAA 3 cut(s) 455, 774, 1103
MspR9I CCNGG 4 cut(s) 44, 764, 765, 991
MvaI CCWGG 2 cut(s) 44, 991
MvnI CGCG 3 cut(s) 195, 872, 998
MwoI GCNNNNNNNGC 8 cut(s) 192, 312, 398, 531, 621, 810, 945, 1077
NaeI GCCGGC 6 cut(s) 184, 247, 406, 586, 622, 859
NciI CCSGG 2 cut(s) 764, 765
NdeII GATC 4 cut(s) 507, 780, 999, 1089
NgoMIV GCCGGC 6 cut(s) 182, 245, 404, 584, 620, 857
NlaIII CATG 5 cut(s) 157, 175, 211, 220, 607
NlaIV GGNNCC 7 cut(s) 48, 187, 295, 421, 565, 589, 805
NmeAIII GCCGAG 4 cut(s) 141, 454, 702, 924
NmuCI GTSAC 2 cut(s) 841, 919
PasI CCCWGGG 1 cut(s) 990
PcsI WCGNNNNNNNCGW 5 cut(s) 489, 567, 663, 924, 1020
PdiI GCCGGC 6 cut(s) 184, 247, 406, 586, 622, 859
PfeI GAWTC 2 cut(s) 654, 897
PflMI CCANNNNNTGG 1 cut(s) 43
PleI GAGTC 2 cut(s) 430, 874
PpsI GAGTC 2 cut(s) 430, 874
Psp6I CCWGG 2 cut(s) 42, 989
PspEI GGTNACC 1 cut(s) 548
PspFI CCCAGC 1 cut(s) 525
PspGI CCWGG 2 cut(s) 42, 989
PspN4I GGNNCC 7 cut(s) 48, 187, 295, 421, 565, 589, 805
PspOMI GGGCCC 1 cut(s) 46
PsuI RGATCY 3 cut(s) 507, 780, 1089
RsaI GTAC 2 cut(s) 752, 1037
RsaNI GTAC 2 cut(s) 751, 1036
SalI GTCGAC 1 cut(s) 110
SaqAI TTAA 3 cut(s) 455, 774, 1103
Sau3AI GATC 4 cut(s) 507, 780, 999, 1089
SchI GAGTC 2 cut(s) 430, 874
ScrFI CCNGG 4 cut(s) 44, 764, 765, 991
SduI GDGCHC 2 cut(s) 50, 990
SfaNI GCATC 2 cut(s) 417, 624
SfcI CTRYAG 1 cut(s) 361
SinI GGWCC 3 cut(s) 513, 647, 819
SmaI CCCGGG 1 cut(s) 765
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 1 cut(s) 86
SspMI CTAG 1 cut(s) 785
StyD4I CCNGG 4 cut(s) 42, 762, 763, 989
StyI CCWWGG 1 cut(s) 1047
TaiI ACGT 3 cut(s) 231, 921, 930
TaqI TCGA 7 cut(s) 111, 234, 357, 576, 642, 666, 984
TasI AATT 1 cut(s) 86
TfiI GAWTC 2 cut(s) 654, 897
Tru1I TTAA 3 cut(s) 455, 774, 1103
Tru9I TTAA 3 cut(s) 455, 774, 1103
TscAI CASTG 3 cut(s) 509, 821, 917
TseFI GTSAC 2 cut(s) 841, 919
TseI GCWGC 5 cut(s) 157, 242, 861, 956, 972
Tsp45I GTSAC 2 cut(s) 841, 919
TspDTI ATGAA 3 cut(s) 64, 224, 298
TspGWI ACGGA 3 cut(s) 178, 673, 967
TspMI CCCGGG 1 cut(s) 763
TspRI CASTG 3 cut(s) 509, 821, 917
Van91I CCANNNNNTGG 1 cut(s) 43
VpaK11BI GGWCC 3 cut(s) 513, 647, 819
XapI RAATTY 1 cut(s) 86
XmaI CCCGGG 1 cut(s) 763
XmiI GTMKAC 2 cut(s) 111, 486
XspI CTAG 1 cut(s) 785
ZraI GACGTC 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.