FvH4_4g06100

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015591
Physical Location & Seq
Forward (+)
5491889 .. 5495475
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06100.t1

Sequence Viewer

Length: 708 bp
ATGGAGACTTTTTCCGGGAAAAAGAGACCCACAATCAGTCTCTCTCTTTTTACTTCCTTCTCCGAGTCAATTTCCAGTGACAAGTCTCTGAATTCGATCAAATCCCCCAGGAATTTCCAGGAGGGTGTGGTTGGGCTTGGCATAGTGGCTGCTATGACTGATTTGAGCAGCCCCAATGAGACACCCATGTCTGCAAAGTCTCCGAAATCAAGCCCAATTCCCATAGTCTCTGCAGCTAAACCTGCTGCTAATTTCAGAGGTGGGTTTGCTGTGGAGAAACAGCTCCAAGGGGTTGAGGTGGATGAGCTGTCTGAGAGCTATACTTGTGTGATTTCCCATTTTGGGAACAATTTGATAAAGAAGCGTGTTTATTTTGATGATAAGCTGAGTGGAGTTGTTAATCATTGTGAGGTGAGAACTGGGGTGTTCTCTGCTTCACCAATGAGTGTTGGTGAAGTGGGGAGGGAGTTTTGGGCTTCGGATTTTCTCAGTTCTTGTTATCTTTGCAAGAAGCAGCTTCAAGGACTGGACATTTTCATGTACAGAGGTGAAAAAGCATTCTGCAGCACTGAGTGCCGTGACAAGCACATTCGAAGCGACAATCACAAAGAGAAATGCAGATCTGGAGCAATTAAATCACTTGATTACTCTGTATCATCACCTTGCTCCAGTCCTCTGGTCTTCTCGGCCGGGGTTGCTGTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

236

Amino Acids

25.48

Weight (kDa)

8.58

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 159 - 202 2.7e-20 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06100
malus_domestica MD13G1233400.v1.1 MD16G1238400.v1.1
prunus_persica Prupe.1G064600_v2.0.a1
pyrus_communis pycom13g20600 pycom16g19950
rosa_chinensis RchiOBHm_Chr4g0397681
rosa_laevigata RLG00000009419
rosa_multiflora Rmu_sc0002729.1_g000013
rosa_roxburghii Rroxscaffold_5G00342490
rosa_rugosa Rorug03G0341900
rosa_samantha Rh4AG079800 Rh4BG077800 Rh4CG085800 Rh4DG073000
rosa_wichuraiana Rw4G006540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 687
AcsI RAATTY 2 cut(s) 91, 112
AdeI CACNNNGTG 1 cut(s) 573
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 1 cut(s) 521
AjnI CCWGG 2 cut(s) 107, 117
AluBI AGCT 6 cut(s) 236, 283, 307, 318, 385, 517
AluI AGCT 6 cut(s) 236, 283, 307, 318, 385, 517
Alw26I GTCTC 6 cut(s) 19, 44, 90, 173, 204, 232
AoxI GGCC 1 cut(s) 687
ApeKI GCWGC 6 cut(s) 149, 168, 233, 245, 514, 564
ApoI RAATTY 2 cut(s) 91, 112
AsuC2I CCSGG 2 cut(s) 16, 691
AsuHPI GGTGA 5 cut(s) 424, 429, 464, 560, 651
AsuII TTCGAA 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 673
BbvI GCAGC 6 cut(s) 136, 180, 232, 245, 526, 576
BceAI ACGGC 1 cut(s) 561
BciT130I CCWGG 2 cut(s) 109, 119
BcnI CCSGG 2 cut(s) 16, 691
BcoDI GTCTC 6 cut(s) 19, 44, 90, 173, 204, 232
BfmI CTRYAG 2 cut(s) 231, 562
BfuAI ACCTGC 1 cut(s) 250
BglII AGATCT 1 cut(s) 620
BisI GCNGC 6 cut(s) 150, 169, 234, 246, 515, 565
BlsI GCNGC 6 cut(s) 151, 170, 235, 247, 516, 566
Bme1390I CCNGG 4 cut(s) 16, 109, 119, 691
BmrFI CCNGG 4 cut(s) 16, 109, 119, 691
BmrI ACTGGG 1 cut(s) 429
BmuI ACTGGG 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 673
BpmI CTGGAG 2 cut(s) 645, 652
Bpu14I TTCGAA 1 cut(s) 592
BpuMI CCSGG 2 cut(s) 16, 691
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 3 cut(s) 107, 286, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 4 cut(s) 75, 424, 531, 669
BseBI CCWGG 2 cut(s) 109, 119
BseDI CCNNGG 3 cut(s) 107, 286, 690
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 4 cut(s) 303, 377, 502, 561
BseNI ACTGG 4 cut(s) 75, 424, 531, 669
BseX3I CGGCCG 1 cut(s) 687
BseXI GCAGC 6 cut(s) 136, 180, 232, 245, 526, 576
Bsh1285I CGRYCG 1 cut(s) 690
BshFI GGCC 1 cut(s) 689
BsiEI CGRYCG 1 cut(s) 690
BsiSI CCGG 2 cut(s) 15, 690
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 6 cut(s) 19, 44, 90, 173, 204, 232
BsmI GAATGC 1 cut(s) 557
BsnI GGCC 1 cut(s) 689
Bso31I GGTCTC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 592
Bsp1407I TGTACA 1 cut(s) 540
Bsp143I GATC 2 cut(s) 96, 620
BspANI GGCC 1 cut(s) 689
BspCNI CTCAG 4 cut(s) 304, 378, 501, 562
BspMAI CTGCAG 2 cut(s) 235, 566
BspMI ACCTGC 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 592
BspTNI GGTCTC 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 540
BsrI ACTGG 4 cut(s) 75, 424, 531, 669
BssECI CCNNGG 3 cut(s) 107, 286, 690
BssMI GATC 2 cut(s) 96, 620
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 2 cut(s) 109, 119
BstAPI GCANNNNNTGC 1 cut(s) 573
BstAUI TGTACA 1 cut(s) 540
BstBI TTCGAA 1 cut(s) 592
BstDEI CTNAG 4 cut(s) 312, 386, 488, 570
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 2 cut(s) 99, 623
BstMAI GTCTC 6 cut(s) 19, 44, 90, 173, 204, 232
BstMBI GATC 2 cut(s) 96, 620
BstMCI CGRYCG 1 cut(s) 690
BstMWI GCNNNNNNNGC 3 cut(s) 242, 573, 695
BstNI CCWGG 2 cut(s) 109, 119
BstSCI CCNGG 4 cut(s) 14, 107, 117, 689
BstSFI CTRYAG 2 cut(s) 231, 562
BstV1I GCAGC 6 cut(s) 136, 180, 232, 245, 526, 576
BstV2I GAAGAC 1 cut(s) 673
BstX2I RGATCY 1 cut(s) 620
BstXI CCANNNNNNTGG 1 cut(s) 676
BstYI RGATCY 1 cut(s) 620
BstZI CGGCCG 1 cut(s) 687
BsuRI GGCC 1 cut(s) 689
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 82, 567
BveI ACCTGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 541
CviAII CATG 3 cut(s) 187, 538, 705
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 4 cut(s) 312, 386, 488, 570
DpnI GATC 2 cut(s) 98, 622
DpnII GATC 2 cut(s) 96, 620
DraIII CACNNNGTG 1 cut(s) 573
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 687
EagI CGGCCG 1 cut(s) 687
EclXI CGGCCG 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 19
Eco52I CGGCCG 1 cut(s) 687
EcoRI GAATTC 1 cut(s) 91
EcoRII CCWGG 2 cut(s) 107, 117
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 3 cut(s) 190, 541, 708
FaiI YATR 7 cut(s) 143, 155, 188, 224, 321, 539, 706
FatI CATG 3 cut(s) 186, 537, 704
Fnu4HI GCNGC 6 cut(s) 150, 169, 234, 246, 515, 565
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 6 cut(s) 150, 169, 234, 246, 515, 565
GluI GCNGC 6 cut(s) 150, 169, 234, 246, 515, 565
GsuI CTGGAG 2 cut(s) 645, 652
HaeIII GGCC 1 cut(s) 689
HapII CCGG 2 cut(s) 15, 690
Hin1II CATG 3 cut(s) 190, 541, 708
HinfI GANTC 1 cut(s) 65
HpaII CCGG 2 cut(s) 15, 690
HphI GGTGA 5 cut(s) 424, 429, 464, 560, 651
Hpy188I TCNGA 6 cut(s) 64, 90, 204, 257, 313, 481
Hpy188III TCNNGA 1 cut(s) 624
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 5 cut(s) 194, 233, 507, 564, 618
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 573, 695
HpyF3I CTNAG 4 cut(s) 312, 386, 488, 570
Hsp92II CATG 3 cut(s) 190, 541, 708
Kzo9I GATC 2 cut(s) 96, 620
LmnI GCTCC 3 cut(s) 288, 626, 671
Lsp1109I GCAGC 6 cut(s) 136, 180, 232, 245, 526, 576
MaeIII GTNAC 2 cut(s) 77, 578
MalI GATC 2 cut(s) 98, 622
MboI GATC 2 cut(s) 96, 620
MboII GAAGA 1 cut(s) 673
MflI RGATCY 1 cut(s) 620
MluCI AATT 7 cut(s) 69, 91, 112, 216, 250, 349, 630
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 7 cut(s) 115, 251, 289, 403, 456, 539, 684
MseI TTAA 2 cut(s) 399, 633
MslI CAYNNNNRTG 1 cut(s) 536
MspI CCGG 2 cut(s) 15, 690
MspR9I CCNGG 4 cut(s) 16, 109, 119, 691
Mva1269I GAATGC 1 cut(s) 557
MvaI CCWGG 2 cut(s) 109, 119
MwoI GCNNNNNNNGC 3 cut(s) 242, 573, 695
NciI CCSGG 2 cut(s) 16, 691
NdeII GATC 2 cut(s) 96, 620
NlaIII CATG 3 cut(s) 190, 541, 708
NmeAIII GCCGAG 1 cut(s) 665
NmuCI GTSAC 2 cut(s) 77, 578
NspV TTCGAA 1 cut(s) 592
PctI GAATGC 1 cut(s) 557
PfoI TCCNGGA 2 cut(s) 14, 117
PkrI GCNGC 6 cut(s) 151, 170, 235, 247, 516, 566
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 107, 117
PspGI CCWGG 2 cut(s) 107, 117
PstI CTGCAG 2 cut(s) 235, 566
PsuI RGATCY 1 cut(s) 620
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 2 cut(s) 399, 633
SatI GCNGC 6 cut(s) 150, 169, 234, 246, 515, 565
Sau3AI GATC 2 cut(s) 96, 620
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 4 cut(s) 16, 109, 119, 691
SfcI CTRYAG 2 cut(s) 231, 562
SfuI TTCGAA 1 cut(s) 592
SmiMI CAYNNNNRTG 1 cut(s) 536
Sse9I AATT 7 cut(s) 69, 91, 112, 216, 250, 349, 630
StyD4I CCNGG 4 cut(s) 14, 107, 117, 689
StyI CCWWGG 1 cut(s) 286
TaqI TCGA 2 cut(s) 95, 592
TasI AATT 7 cut(s) 69, 91, 112, 216, 250, 349, 630
TatI WGTACW 1 cut(s) 540
Tru1I TTAA 2 cut(s) 399, 633
Tru9I TTAA 2 cut(s) 399, 633
TscAI CASTG 2 cut(s) 82, 574
TseFI GTSAC 2 cut(s) 77, 578
TseI GCWGC 6 cut(s) 149, 168, 233, 245, 514, 564
Tsp45I GTSAC 2 cut(s) 77, 578
TspDTI ATGAA 1 cut(s) 526
TspRI CASTG 2 cut(s) 82, 574
XapI RAATTY 2 cut(s) 91, 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.