MD13G1233400.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015591
Physical Location & Seq
Forward (+)
23313688 .. 23317250
3563 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1233400.v1.1.491

Sequence Viewer

Length: 711 bp
ATGGAGAATTTTTCCGGGAAAAAGCGACCCACAATCAGTATCTCACTTTTCACTACTTTTTCCGAGTCAATTTCCTCTGACAAGTTCCCCAAGTCAATCAAATCCCCAAGAAATTTCCAAGATGGGGTTGTTGGGCTTGGAATAGTGGCTGCCATGACTGATTTGGGCAGCCCCAATGAAGTGGCTTTGTCTGAAAAGTCACCAAGGTCGAGCCCAATCCCCATAGTCTCTGCAGCTAAGCCTGCAGCTAATTTCAGAAGTGGGTTTTGTGTGGAGAGGGCTGGGGCTGTGGTGGATGAATTGTCTGAGAGCTATACGTGTGTGATTTCGCATTTCGGAAACAATTTGACATCGAAGCGGGTTTATTTCGGTGATAAGCTGAGTGGGGTTGTGGATGATCCTAATGCTGGTATGGTGGTGGCCTCTGGGGTGTTCTCTACTTCTCCATTGAGTATTGGTGAAGTGGGAAGAGAGTTTTGGGCTTCCGATTTTCTCAGTTGTTGTTATCTTTGCAAGAAGCAGCTTCATGGACTGGACATTTTCATGTACAGAGGTGAGAAAGCATTTTGCAGCGCCGAGTGCCGTGACAAGCACATGCGCAGCGACCATCATAAAGACAAGTGCAGATCCGGAGCATTAAAATCGCTTGATTACTCAGCGTCGCCGTGCTCTCGTCCGCTCGTCTTCTTGGCCGGGGTTGAGGTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

237

Amino Acids

25.49

Weight (kDa)

8.34

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 161 - 204 9.7e-20 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06100
malus_domestica MD13G1233400.v1.1 MD16G1238400.v1.1
prunus_persica Prupe.1G064600_v2.0.a1
pyrus_communis pycom13g20600 pycom16g19950
rosa_chinensis RchiOBHm_Chr4g0397681
rosa_laevigata RLG00000009419
rosa_multiflora Rmu_sc0002729.1_g000013
rosa_roxburghii Rroxscaffold_5G00342490
rosa_rugosa Rorug03G0341900
rosa_samantha Rh4AG079800 Rh4BG077800 Rh4CG085800 Rh4DG073000
rosa_wichuraiana Rw4G006540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 599
AccBSI CCGCTC 1 cut(s) 679
AccIII TCCGGA 1 cut(s) 629
AciI CCGC 2 cut(s) 358, 677
AclWI GGATC 2 cut(s) 392, 621
AcoI YGGCCR 1 cut(s) 690
AcsI RAATTY 2 cut(s) 7, 112
AfaI GTAC 1 cut(s) 548
AfiI CCNNNNNNNGG 2 cut(s) 124, 407
AflIII ACRYGT 1 cut(s) 317
AjuI GAANNNNNNNTTGG 2 cut(s) 460, 492
AluBI AGCT 5 cut(s) 236, 248, 312, 379, 523
AluI AGCT 5 cut(s) 236, 248, 312, 379, 523
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 2 cut(s) 392, 621
Aor13HI TCCGGA 1 cut(s) 629
AoxI GGCC 2 cut(s) 420, 690
ApeKI GCWGC 7 cut(s) 149, 168, 233, 245, 520, 570, 600
ApoI RAATTY 2 cut(s) 7, 112
AspLEI GCGC 2 cut(s) 575, 600
AsuC2I CCSGG 2 cut(s) 16, 694
AsuHPI GGTGA 4 cut(s) 192, 383, 470, 566
BanII GRGCYC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 676
Bbv12I GWGCWC 1 cut(s) 671
BbvI GCAGC 7 cut(s) 136, 180, 245, 257, 532, 582, 612
BccI CCATC 2 cut(s) 116, 615
BceAI ACGGC 2 cut(s) 567, 649
BcgI CGANNNNNNTGC 2 cut(s) 624, 658
BcnI CCSGG 2 cut(s) 16, 694
BcoDI GTCTC 1 cut(s) 232
BfmI CTRYAG 2 cut(s) 231, 243
BfoI RGCGCY 1 cut(s) 576
BisI GCNGC 7 cut(s) 150, 169, 234, 246, 521, 571, 601
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 7 cut(s) 151, 170, 235, 247, 522, 572, 602
Bme1390I CCNGG 2 cut(s) 16, 694
BmrFI CCNGG 2 cut(s) 16, 694
BpiI GAAGAC 1 cut(s) 676
Bpu1102I GCTNAGC 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 16, 694
BsaAI YACGTR 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 203, 693
BsaWI WCCGGW 1 cut(s) 629
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 407
Bse1I ACTGG 1 cut(s) 537
BseAI TCCGGA 1 cut(s) 629
BseDI CCNNGG 2 cut(s) 203, 693
BseGI GGATG 2 cut(s) 301, 400
BseLI CCNNNNNNNGG 2 cut(s) 124, 407
BseMII CTCAG 4 cut(s) 297, 371, 508, 669
BseNI ACTGG 1 cut(s) 537
BseXI GCAGC 7 cut(s) 136, 180, 245, 257, 532, 582, 612
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 643
BshFI GGCC 2 cut(s) 422, 692
BsiHKAI GWGCWC 1 cut(s) 671
BsiSI CCGG 3 cut(s) 15, 630, 693
BslI CCNNNNNNNGG 2 cut(s) 124, 407
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 2 cut(s) 422, 692
Bsp1286I GDGCHC 2 cut(s) 215, 671
Bsp13I TCCGGA 1 cut(s) 629
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 2 cut(s) 397, 626
Bsp1720I GCTNAGC 1 cut(s) 237
BspACI CCGC 2 cut(s) 358, 677
BspANI GGCC 2 cut(s) 422, 692
BspCNI CTCAG 4 cut(s) 298, 372, 507, 668
BspEI TCCGGA 1 cut(s) 629
BspMAI CTGCAG 2 cut(s) 235, 247
BspPI GGATC 2 cut(s) 392, 621
BsrBI CCGCTC 1 cut(s) 679
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 1 cut(s) 537
BssECI CCNNGG 2 cut(s) 203, 693
BssMI GATC 2 cut(s) 397, 626
BssT1I CCWWGG 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 463
BstAUI TGTACA 1 cut(s) 546
BstBAI YACGTR 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 5 cut(s) 237, 306, 380, 494, 655
BstF5I GGATG 2 cut(s) 301, 400
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 2 cut(s) 575, 600
BstKTI GATC 2 cut(s) 400, 629
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 397, 626
BstMWI GCNNNNNNNGC 2 cut(s) 242, 579
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 14, 692
BstSFI CTRYAG 2 cut(s) 231, 243
BstV1I GCAGC 7 cut(s) 136, 180, 245, 257, 532, 582, 612
BstV2I GAAGAC 1 cut(s) 676
BstX2I RGATCY 1 cut(s) 626
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 1 cut(s) 626
BsuRI GGCC 2 cut(s) 422, 692
BtsCI GGATG 2 cut(s) 301, 400
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 2 cut(s) 575, 600
CseI GACGC 1 cut(s) 648
Csp6I GTAC 1 cut(s) 547
CviAII CATG 5 cut(s) 154, 527, 544, 595, 708
CviQI GTAC 1 cut(s) 547
DdeI CTNAG 5 cut(s) 237, 306, 380, 494, 655
DpnI GATC 2 cut(s) 399, 628
DpnII GATC 2 cut(s) 397, 626
EaeI YGGCCR 1 cut(s) 690
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 5 cut(s) 157, 530, 547, 598, 711
FaiI YATR 9 cut(s) 155, 224, 315, 413, 528, 545, 596, 612, 709
FatI CATG 5 cut(s) 153, 526, 543, 594, 707
FauI CCCGC 1 cut(s) 351
Fnu4HI GCNGC 7 cut(s) 150, 169, 234, 246, 521, 571, 601
FokI GGATG 2 cut(s) 308, 407
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 7 cut(s) 150, 169, 234, 246, 521, 571, 601
FspI TGCGCA 1 cut(s) 599
GlaI GCGC 2 cut(s) 574, 599
GluI GCNGC 7 cut(s) 150, 169, 234, 246, 521, 571, 601
GsaI CCCAGC 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 2 cut(s) 422, 692
HapII CCGG 3 cut(s) 15, 630, 693
HgaI GACGC 1 cut(s) 648
HhaI GCGC 2 cut(s) 575, 600
Hin1II CATG 5 cut(s) 157, 530, 547, 598, 711
Hin6I GCGC 2 cut(s) 573, 598
HinP1I GCGC 2 cut(s) 573, 598
HinfI GANTC 1 cut(s) 65
HpaII CCGG 3 cut(s) 15, 630, 693
HphI GGTGA 4 cut(s) 192, 383, 470, 566
Hpy188I TCNGA 7 cut(s) 64, 79, 193, 257, 307, 338, 487
Hpy188III TCNNGA 1 cut(s) 630
Hpy99I CGWCG 1 cut(s) 664
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 5 cut(s) 233, 245, 513, 570, 624
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 579
HpyF3I CTNAG 5 cut(s) 237, 306, 380, 494, 655
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 5 cut(s) 157, 530, 547, 598, 711
HspAI GCGC 2 cut(s) 573, 598
Kpn2I TCCGGA 1 cut(s) 629
Kzo9I GATC 2 cut(s) 397, 626
LmnI GCTCC 1 cut(s) 632
LpnPI CCDG 8 cut(s) 28, 255, 267, 393, 411, 518, 643, 706
Lsp1109I GCAGC 7 cut(s) 136, 180, 245, 257, 532, 582, 612
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 198, 584
MalI GATC 2 cut(s) 399, 628
MbiI CCGCTC 1 cut(s) 679
MboI GATC 2 cut(s) 397, 626
MboII GAAGA 2 cut(s) 480, 676
MflI RGATCY 1 cut(s) 626
MhlI GDGCHC 2 cut(s) 215, 671
MluCI AATT 6 cut(s) 7, 69, 112, 250, 299, 343
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 5 cut(s) 85, 270, 433, 545, 694
MroI TCCGGA 1 cut(s) 629
MseI TTAA 1 cut(s) 638
MslI CAYNNNNRTG 1 cut(s) 542
MspI CCGG 3 cut(s) 15, 630, 693
MspR9I CCNGG 2 cut(s) 16, 694
MwoI GCNNNNNNNGC 2 cut(s) 242, 579
NciI CCSGG 2 cut(s) 16, 694
NdeII GATC 2 cut(s) 397, 626
NlaIII CATG 5 cut(s) 157, 530, 547, 598, 711
NmeAIII GCCGAG 1 cut(s) 601
NmuCI GTSAC 2 cut(s) 198, 584
NsbI TGCGCA 1 cut(s) 599
NspI RCATGY 1 cut(s) 598
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 7 cut(s) 151, 170, 235, 247, 522, 572, 602
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Ppu21I YACGTR 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 281
PstI CTGCAG 2 cut(s) 235, 247
PsuI RGATCY 1 cut(s) 626
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
RseI CAYNNNNRTG 1 cut(s) 542
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 7 cut(s) 150, 169, 234, 246, 521, 571, 601
Sau3AI GATC 2 cut(s) 397, 626
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 16, 694
SduI GDGCHC 2 cut(s) 215, 671
SetI ASST 9 cut(s) 209, 238, 250, 314, 320, 381, 525, 556, 705
SfcI CTRYAG 2 cut(s) 231, 243
SmiMI CAYNNNNRTG 1 cut(s) 542
Sse9I AATT 6 cut(s) 7, 69, 112, 250, 299, 343
SsiI CCGC 2 cut(s) 358, 677
StyD4I CCNGG 2 cut(s) 14, 692
StyI CCWWGG 1 cut(s) 203
TaiI ACGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 209, 353
TasI AATT 6 cut(s) 7, 69, 112, 250, 299, 343
TatI WGTACW 1 cut(s) 546
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TseFI GTSAC 2 cut(s) 198, 584
TseI GCWGC 7 cut(s) 149, 168, 233, 245, 520, 570, 600
Tsp45I GTSAC 2 cut(s) 198, 584
TspDTI ATGAA 4 cut(s) 192, 312, 515, 532
XapI RAATTY 2 cut(s) 7, 112
XceI RCATGY 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.