Rroxscaffold_5G00342490

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015591
Physical Location & Seq
Forward (+)
11459464 .. 11463033
3570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342490.1

Sequence Viewer

Length: 642 bp
ATGGAGACTTTTTCCGGGAAAAAGAGACCCACAATTAGTCTTTCTCTTTTTACTTCTTTCTCCGAGTCAATTTCCAGTGATAAGTCTCCGAATTCTATCAAATCCCCCAGAAATTTCCAGGATGGTGTGGTTGGGCTTGGCATAGTGGCTGCTATGACTGATTTGAGCAGCCCCAAAGAAATACCCATGTCTGCAAAGTCACCCAAATCGAGCCCAATTCCCATAGTCTCTGCAGCTAAGCCTGCTGCTAATTTCAGAGGTGGGCTTGTTGTGGAGAAACAGCTCCAAGGGGTTGTGGTGGATGAATTGTCTGAGAGCTATACTTGTGTGATTTCCCATTTTGGGAACAATTTGACAAAGAAACGTGTTTACTTTGATGATAAGCTCAGTGGAGTTGTTAATGATTGTAGTGATTGTGAGGTGAGAAGTGGGGTGTTCTCTGCTTCACCATTGAGTGTTGGTGAAGTGGGGGAGAGTTTTGGTCTTCGGATTTTCTCAGTTCTTGTTATCTTTGCAAGAAGCAGCTTCAAGGACTGGACATTTTCATGTACAGAGGTGAAAAAGCATTTTGCAGCACTGAGTGCCGTGACAAACACATTCGAAGCGACAATTACAAAGAGAAGTGCAGATCTGAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

213

Amino Acids

22.92

Weight (kDa)

8.87

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06100
malus_domestica MD13G1233400.v1.1 MD16G1238400.v1.1
prunus_persica Prupe.1G064600_v2.0.a1
pyrus_communis pycom13g20600 pycom16g19950
rosa_chinensis RchiOBHm_Chr4g0397681
rosa_laevigata RLG00000009419
rosa_multiflora Rmu_sc0002729.1_g000013
rosa_roxburghii Rroxscaffold_5G00342490
rosa_rugosa Rorug03G0341900
rosa_samantha Rh4AG079800 Rh4BG077800 Rh4CG085800 Rh4DG073000
rosa_wichuraiana Rw4G006540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 91, 112
AdeI CACNNNGTG 1 cut(s) 581
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 1 cut(s) 342
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 1 cut(s) 529
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 5 cut(s) 236, 283, 318, 385, 525
AluI AGCT 5 cut(s) 236, 283, 318, 385, 525
Alw26I GTCTC 3 cut(s) 19, 90, 232
ApeKI GCWGC 6 cut(s) 149, 168, 233, 245, 522, 572
ApoI RAATTY 2 cut(s) 91, 112
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 5 cut(s) 192, 433, 438, 473, 568
AsuII TTCGAA 1 cut(s) 600
BanII GRGCYC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 476
BbvI GCAGC 6 cut(s) 136, 180, 232, 245, 534, 584
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 569
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 3 cut(s) 19, 90, 232
BfmI CTRYAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 628
BisI GCNGC 6 cut(s) 150, 169, 234, 246, 523, 573
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 6 cut(s) 151, 170, 235, 247, 524, 574
Bme1390I CCNGG 2 cut(s) 16, 119
BmrFI CCNGG 2 cut(s) 16, 119
BpiI GAAGAC 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 2 cut(s) 75, 539
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 2 cut(s) 127, 307
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 4 cut(s) 303, 400, 510, 569
BseNI ACTGG 2 cut(s) 75, 539
BseXI GCAGC 6 cut(s) 136, 180, 232, 245, 534, 584
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 3 cut(s) 19, 90, 232
Bso31I GGTCTC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 215
Bsp1407I TGTACA 1 cut(s) 548
Bsp143I GATC 1 cut(s) 628
Bsp1720I GCTNAGC 1 cut(s) 237
BspCNI CTCAG 4 cut(s) 304, 399, 509, 570
BspMAI CTGCAG 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 600
BspTNI GGTCTC 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 548
BsrI ACTGG 2 cut(s) 75, 539
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 1 cut(s) 628
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 119
BstAPI GCANNNNNTGC 1 cut(s) 581
BstAUI TGTACA 1 cut(s) 548
BstBI TTCGAA 1 cut(s) 600
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 5 cut(s) 237, 312, 386, 496, 578
BstF5I GGATG 2 cut(s) 127, 307
BstKTI GATC 1 cut(s) 631
BstMAI GTCTC 3 cut(s) 19, 90, 232
BstMBI GATC 1 cut(s) 628
BstMWI GCNNNNNNNGC 2 cut(s) 242, 581
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 14, 117
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 6 cut(s) 136, 180, 232, 245, 534, 584
BstV2I GAAGAC 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
BtsCI GGATG 2 cut(s) 127, 307
BtsIMutI CAGTG 3 cut(s) 82, 394, 575
Cac8I GCNNGC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 549
CviAII CATG 2 cut(s) 187, 546
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 5 cut(s) 237, 312, 386, 496, 578
DpnI GATC 1 cut(s) 630
DpnII GATC 1 cut(s) 628
DraIII CACNNNGTG 1 cut(s) 581
Eco130I CCWWGG 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 190, 549
FaiI YATR 6 cut(s) 143, 155, 188, 224, 321, 547
FatI CATG 2 cut(s) 186, 545
Fnu4HI GCNGC 6 cut(s) 150, 169, 234, 246, 523, 573
FokI GGATG 2 cut(s) 134, 314
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 6 cut(s) 150, 169, 234, 246, 523, 573
GluI GCNGC 6 cut(s) 150, 169, 234, 246, 523, 573
HapII CCGG 1 cut(s) 15
Hin1II CATG 2 cut(s) 190, 549
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 15
HphI GGTGA 5 cut(s) 192, 433, 438, 473, 568
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 6 cut(s) 64, 90, 257, 313, 489, 633
Hpy8I GTNNAC 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 5 cut(s) 194, 233, 515, 572, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 581
HpyF3I CTNAG 5 cut(s) 237, 312, 386, 496, 578
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 2 cut(s) 190, 549
Kzo9I GATC 1 cut(s) 628
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 7 cut(s) 28, 88, 104, 121, 131, 255, 520
Lsp1109I GCAGC 6 cut(s) 136, 180, 232, 245, 534, 584
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 2 cut(s) 198, 586
MalI GATC 1 cut(s) 630
MboI GATC 1 cut(s) 628
MboII GAAGA 1 cut(s) 476
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 9 cut(s) 33, 69, 91, 112, 216, 250, 305, 349, 609
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 3 cut(s) 251, 412, 547
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 544
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 16, 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 242, 581
NciI CCSGG 1 cut(s) 16
NdeII GATC 1 cut(s) 628
NlaIII CATG 2 cut(s) 190, 549
NmuCI GTSAC 2 cut(s) 198, 586
NspV TTCGAA 1 cut(s) 600
PfoI TCCNGGA 2 cut(s) 14, 117
PkrI GCNGC 6 cut(s) 151, 170, 235, 247, 524, 574
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PstI CTGCAG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 628
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 544
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 6 cut(s) 150, 169, 234, 246, 523, 573
Sau3AI GATC 1 cut(s) 628
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 16, 119
SduI GDGCHC 1 cut(s) 215
SetI ASST 9 cut(s) 238, 262, 285, 320, 367, 387, 423, 527, 558
SfcI CTRYAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 600
SmiMI CAYNNNNRTG 1 cut(s) 544
Sse9I AATT 9 cut(s) 33, 69, 91, 112, 216, 250, 305, 349, 609
StyD4I CCNGG 2 cut(s) 14, 117
StyI CCWWGG 1 cut(s) 286
TaiI ACGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 209, 600
TasI AATT 9 cut(s) 33, 69, 91, 112, 216, 250, 305, 349, 609
TatI WGTACW 1 cut(s) 548
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 3 cut(s) 82, 394, 582
TseFI GTSAC 2 cut(s) 198, 586
TseI GCWGC 6 cut(s) 149, 168, 233, 245, 522, 572
Tsp45I GTSAC 2 cut(s) 198, 586
TspDTI ATGAA 2 cut(s) 318, 534
TspRI CASTG 3 cut(s) 82, 394, 582
XapI RAATTY 2 cut(s) 91, 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.