Prupe.1G064600_v2.0.a1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015591
Physical Location & Seq
Forward (+)
4596091 .. 4599995
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G064600.1

Sequence Viewer

Length: 708 bp
ATGGAGAATTTTTCCCGGAAAAAAAGACCCACCATCAGTCTCTCACTCTTCACTACCTTGTCTGAGTCAATTTCCTCTGATAAGTATCCCAATTCAATCAAATCTCCTAGAAATTTCCAAGAGGGTGTGGTTGGACTTGGCATAGTGGCTGCTATGACTGATTTGAGCAACCCCAATGAAGTGACTTCGTCTGAAAAGTCACCAAGGTCAAGCCCAATCCCCATAGTCTCTGCAGCTAAACCTGCTGCTAATTTCAGAGGTGGGTTTCATATGGAGAGGCCAGGGGTTGTGGTAGATGAATTGTCTGAGAGTTATACTTGTGTGATTTCTCATTTTGGGAACAATTTGACAAGGAAACGTGTTTATTTTGATGATAAGCTTAGTGGAGTTGTTAATGATCCTAGTTCTGGTGTGGTGGCCTCTGGGGTGTTCTCTGCTTCACCAGTGAGTGTTGGTGAAGTGGGTAGAGAGTTTTGGGCTTCTGATTTTCTCAGTTCTTGTTATCTTTGCAACAAGCAGCTTCATGGACTGGACATTTTCATGTACAGAGGTGAAAAAGCATTTTGCAGCACCGAGTGCCGCGACAAACACATTAGAAGCGACGATCACAAAGAGAAGTGCAGATCTGAAGCAATAAAGTCAATGGATTACTCTGTGTCACCCTGCTCTAGTCCGCTGGTCTTCTTGGCAGGGGTCGCTGTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

236

Amino Acids

25.61

Weight (kDa)

7.59

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06100
malus_domestica MD13G1233400.v1.1 MD16G1238400.v1.1
prunus_persica Prupe.1G064600_v2.0.a1
pyrus_communis pycom13g20600 pycom16g19950
rosa_chinensis RchiOBHm_Chr4g0397681
rosa_laevigata RLG00000009419
rosa_multiflora Rmu_sc0002729.1_g000013
rosa_roxburghii Rroxscaffold_5G00342490
rosa_rugosa Rorug03G0341900
rosa_samantha Rh4AG079800 Rh4BG077800 Rh4CG085800 Rh4DG073000
rosa_wichuraiana Rw4G006540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AccII CGCG 1 cut(s) 582
AciI CCGC 2 cut(s) 580, 674
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 2 cut(s) 7, 112
AcuI CTGAAG 1 cut(s) 648
AdeI CACNNNGTG 1 cut(s) 576
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 1 cut(s) 407
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 1 cut(s) 96
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 3 cut(s) 236, 379, 520
AluI AGCT 3 cut(s) 236, 379, 520
Alw26I GTCTC 2 cut(s) 44, 232
AlwI GGATC 1 cut(s) 392
AoxI GGCC 2 cut(s) 278, 417
ApeKI GCWGC 5 cut(s) 149, 233, 245, 517, 567
ApoI RAATTY 2 cut(s) 7, 112
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 5 cut(s) 192, 432, 467, 563, 651
BbsI GAAGAC 1 cut(s) 673
BbvI GCAGC 5 cut(s) 136, 232, 245, 529, 579
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 1 cut(s) 96
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 44, 232
BfaI CTAG 3 cut(s) 108, 402, 669
BfmI CTRYAG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 250
BfuI GTATCC 1 cut(s) 96
BglII AGATCT 1 cut(s) 623
BisI GCNGC 6 cut(s) 150, 234, 246, 518, 568, 580
BlsI GCNGC 6 cut(s) 151, 235, 247, 519, 569, 581
Bme1390I CCNGG 2 cut(s) 16, 282
BmrFI CCNGG 2 cut(s) 16, 282
BpiI GAAGAC 1 cut(s) 673
BpuMI CCSGG 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 203, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 2 cut(s) 443, 534
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 203, 281
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 3 cut(s) 54, 297, 505
BseNI ACTGG 2 cut(s) 443, 534
BseXI GCAGC 5 cut(s) 136, 232, 245, 529, 579
BsgI GTGCAG 1 cut(s) 640
Bsh1236I CGCG 1 cut(s) 582
BshFI GGCC 2 cut(s) 280, 419
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 44, 232
BsnI GGCC 2 cut(s) 280, 419
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 3 cut(s) 397, 604, 623
BspACI CCGC 2 cut(s) 580, 674
BspANI GGCC 2 cut(s) 280, 419
BspCNI CTCAG 3 cut(s) 55, 298, 504
BspFNI CGCG 1 cut(s) 582
BspMAI CTGCAG 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 2 cut(s) 443, 534
BssECI CCNNGG 2 cut(s) 203, 281
BssMI GATC 3 cut(s) 397, 604, 623
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 576
BstAUI TGTACA 1 cut(s) 543
BstDEI CTNAG 4 cut(s) 63, 306, 380, 491
BstFNI CGCG 1 cut(s) 582
BstKTI GATC 3 cut(s) 400, 607, 626
BstMAI GTCTC 2 cut(s) 44, 232
BstMBI GATC 3 cut(s) 397, 604, 623
BstMWI GCNNNNNNNGC 3 cut(s) 242, 576, 695
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 14, 280
BstSFI CTRYAG 1 cut(s) 231
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 5 cut(s) 136, 232, 245, 529, 579
BstV2I GAAGAC 1 cut(s) 673
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 2 cut(s) 280, 419
BtsIMutI CAGTG 1 cut(s) 450
BveI ACCTGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 544
CviAII CATG 3 cut(s) 524, 541, 705
CviJI RGCY 8 cut(s) 149, 213, 236, 280, 379, 419, 479, 520
CviKI_1 RGCY 8 cut(s) 149, 213, 236, 280, 379, 419, 479, 520
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 4 cut(s) 63, 306, 380, 491
DpnI GATC 3 cut(s) 399, 606, 625
DpnII GATC 3 cut(s) 397, 604, 623
DraIII CACNNNGTG 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 648
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 3 cut(s) 527, 544, 708
FaiI YATR 9 cut(s) 143, 155, 224, 270, 272, 315, 525, 542, 706
FatI CATG 3 cut(s) 523, 540, 704
FauNDI CATATG 1 cut(s) 270
Fnu4HI GCNGC 6 cut(s) 150, 234, 246, 518, 568, 580
Fsp4HI GCNGC 6 cut(s) 150, 234, 246, 518, 568, 580
FspBI CTAG 3 cut(s) 108, 402, 669
GluI GCNGC 6 cut(s) 150, 234, 246, 518, 568, 580
HaeIII GGCC 2 cut(s) 280, 419
HapII CCGG 1 cut(s) 16
Hin1II CATG 3 cut(s) 527, 544, 708
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 16
HphI GGTGA 5 cut(s) 192, 432, 467, 563, 651
Hpy188I TCNGA 7 cut(s) 64, 79, 193, 257, 307, 484, 628
Hpy99I CGWCG 1 cut(s) 605
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 4 cut(s) 233, 510, 567, 621
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 576, 695
HpyF3I CTNAG 4 cut(s) 63, 306, 380, 491
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 3 cut(s) 527, 544, 708
Kzo9I GATC 3 cut(s) 397, 604, 623
Lsp1109I GCAGC 5 cut(s) 136, 232, 245, 529, 579
MaeI CTAG 3 cut(s) 108, 402, 669
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 3 cut(s) 181, 198, 657
MalI GATC 3 cut(s) 399, 606, 625
MboI GATC 3 cut(s) 397, 604, 623
MboII GAAGA 2 cut(s) 40, 673
MflI RGATCY 1 cut(s) 623
MluCI AATT 7 cut(s) 7, 69, 91, 112, 250, 299, 343
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 6 cut(s) 85, 115, 251, 270, 430, 542
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 676
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 2 cut(s) 16, 282
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 3 cut(s) 242, 576, 695
NciI CCSGG 1 cut(s) 16
NdeI CATATG 1 cut(s) 270
NdeII GATC 3 cut(s) 397, 604, 623
NlaIII CATG 3 cut(s) 527, 544, 708
NmuCI GTSAC 3 cut(s) 181, 198, 657
PflFI GACNNNGTC 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 6 cut(s) 151, 235, 247, 519, 569, 581
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PstI CTGCAG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 623
PsyI GACNNNGTC 1 cut(s) 187
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 1 cut(s) 539
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 6 cut(s) 150, 234, 246, 518, 568, 580
Sau3AI GATC 3 cut(s) 397, 604, 623
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 16, 282
SetI ASST 9 cut(s) 59, 209, 238, 244, 262, 361, 381, 522, 553
SfcI CTRYAG 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 539
Sse9I AATT 7 cut(s) 7, 69, 91, 112, 250, 299, 343
SsiI CCGC 2 cut(s) 580, 674
SspMI CTAG 3 cut(s) 108, 402, 669
StyD4I CCNGG 2 cut(s) 14, 280
StyI CCWWGG 1 cut(s) 203
TaiI ACGT 1 cut(s) 361
TasI AATT 7 cut(s) 7, 69, 91, 112, 250, 299, 343
TatI WGTACW 1 cut(s) 543
TauI GCSGC 1 cut(s) 582
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 3 cut(s) 181, 198, 657
TseI GCWGC 5 cut(s) 149, 233, 245, 517, 567
Tsp45I GTSAC 3 cut(s) 181, 198, 657
TspDTI ATGAA 5 cut(s) 192, 257, 312, 512, 529
TspRI CASTG 1 cut(s) 450
Tth111I GACNNNGTC 1 cut(s) 187
XapI RAATTY 2 cut(s) 7, 112
XspI CTAG 3 cut(s) 108, 402, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.