Rh4BG077800

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015591
Physical Location & Seq
Forward (+)
13741926 .. 13745506
3581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG077800.1

Sequence Viewer

Length: 717 bp
ATGGAGACTTTTTCCGGGAAAAAGAGACCCACAATCAGTCTTTCTCTTTTTACTTCTTTCTCGGAGTCAATTTCCAGTGACAAGTCTTCGAATTCGATCAAATCCCCCAGAAATTTCGAGGATGGTGTGGTTGGGCTTGGCATAGTGGCTGCTATGACTGATTTGAGCAGCCCCAAAGAAATACCCATGTCTGCAAAGTCACCCAAATCGAGCCCAATTCCCATAGTATCTGCAGCTAAGCCTGCTGCTAATTTCAGAGGTGGGCTTGTTATGGAGAAACAGCTCCAAGGGGTTGTGGTGGATGAATTGTCTGAGAGCTATACTTGTGTGATTTCCCATTTTGGGAACAATTTGACAAAGAAACGTGTTTACTTTGATGATAAGCTCAGTGGAGTTTTTAATGATCGTAGTGATTGTGAGGTGAGAAGTGGGGTGTTCTCTGCTTCACCATTGAGTGTTGGTGAAGTTGGGGGAGAGTTTTGGTCTTCGGATTTTCTCAGTTCTTGTTATCTTTGCAAGAAGCAGCTTCAAGGACTGGACATTTTCATGTACAGAGGTGAAAAAGCATTTTGCAGTACTGAATGCCGTGACAAACACATTCGAAGCGACAATTACAAAGAGAAGTGCAGATCTGAAGCAATAAAATCACTTGATTACTCTGTATCATCACCTTGCTCCAGTCCTCTGGTCTTCTCGGCCGGGGTTGCTGTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

238

Amino Acids

25.82

Weight (kDa)

8.06

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 162 - 204 3.7e-20 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06100
malus_domestica MD13G1233400.v1.1 MD16G1238400.v1.1
prunus_persica Prupe.1G064600_v2.0.a1
pyrus_communis pycom13g20600 pycom16g19950
rosa_chinensis RchiOBHm_Chr4g0397681
rosa_laevigata RLG00000009419
rosa_multiflora Rmu_sc0002729.1_g000013
rosa_roxburghii Rroxscaffold_5G00342490
rosa_rugosa Rorug03G0341900
rosa_samantha Rh4AG079800 Rh4BG077800 Rh4CG085800 Rh4DG073000
rosa_wichuraiana Rw4G006540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 2 cut(s) 91, 112
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 2 cut(s) 551, 577
AfiI CCNNNNNNNGG 1 cut(s) 342
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 1 cut(s) 530
AluBI AGCT 5 cut(s) 236, 283, 318, 385, 526
AluI AGCT 5 cut(s) 236, 283, 318, 385, 526
Alw26I GTCTC 1 cut(s) 19
AoxI GGCC 1 cut(s) 696
ApeKI GCWGC 5 cut(s) 149, 168, 233, 245, 523
ApoI RAATTY 2 cut(s) 91, 112
AsuC2I CCSGG 2 cut(s) 16, 700
AsuHPI GGTGA 6 cut(s) 192, 433, 438, 473, 569, 660
AsuII TTCGAA 2 cut(s) 89, 601
BanII GRGCYC 1 cut(s) 215
BbsI GAAGAC 3 cut(s) 78, 477, 682
BbvI GCAGC 5 cut(s) 136, 180, 232, 245, 535
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 570
BcnI CCSGG 2 cut(s) 16, 700
BcoDI GTCTC 1 cut(s) 19
BfmI CTRYAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 629
BisI GCNGC 5 cut(s) 150, 169, 234, 246, 524
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 5 cut(s) 151, 170, 235, 247, 525
BmcAI AGTACT 1 cut(s) 577
Bme1390I CCNGG 2 cut(s) 16, 700
BmrFI CCNGG 2 cut(s) 16, 700
BpiI GAAGAC 3 cut(s) 78, 477, 682
BpmI CTGGAG 1 cut(s) 661
Bpu1102I GCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 2 cut(s) 89, 601
BpuMI CCSGG 2 cut(s) 16, 700
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 286, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 3 cut(s) 75, 540, 678
BseDI CCNNGG 2 cut(s) 286, 699
BseGI GGATG 2 cut(s) 127, 307
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 3 cut(s) 303, 400, 511
BseNI ACTGG 3 cut(s) 75, 540, 678
BseX3I CGGCCG 1 cut(s) 696
BseXI GCAGC 5 cut(s) 136, 180, 232, 245, 535
BsgI GTGCAG 1 cut(s) 646
Bsh1285I CGRYCG 1 cut(s) 699
BshFI GGCC 1 cut(s) 698
BsiEI CGRYCG 1 cut(s) 699
BsiSI CCGG 2 cut(s) 15, 699
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 587
BsnI GGCC 1 cut(s) 698
Bso31I GGTCTC 1 cut(s) 19
Bsp119I TTCGAA 2 cut(s) 89, 601
Bsp1286I GDGCHC 1 cut(s) 215
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 3 cut(s) 96, 403, 629
Bsp1720I GCTNAGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 3 cut(s) 304, 399, 510
BspMAI CTGCAG 1 cut(s) 235
BspT104I TTCGAA 2 cut(s) 89, 601
BspTNI GGTCTC 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 3 cut(s) 75, 540, 678
BssECI CCNNGG 2 cut(s) 286, 699
BssMI GATC 3 cut(s) 96, 403, 629
BssT1I CCWWGG 1 cut(s) 286
BstAUI TGTACA 1 cut(s) 549
BstBI TTCGAA 2 cut(s) 89, 601
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 4 cut(s) 237, 312, 386, 497
BstF5I GGATG 2 cut(s) 127, 307
BstKTI GATC 3 cut(s) 99, 406, 632
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 3 cut(s) 96, 403, 629
BstMCI CGRYCG 1 cut(s) 699
BstMWI GCNNNNNNNGC 2 cut(s) 242, 704
BstSCI CCNGG 2 cut(s) 14, 698
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 5 cut(s) 136, 180, 232, 245, 535
BstV2I GAAGAC 3 cut(s) 78, 477, 682
BstX2I RGATCY 1 cut(s) 629
BstXI CCANNNNNNTGG 1 cut(s) 685
BstYI RGATCY 1 cut(s) 629
BstZI CGGCCG 1 cut(s) 696
BsuRI GGCC 1 cut(s) 698
BtsCI GGATG 2 cut(s) 127, 307
BtsIMutI CAGTG 2 cut(s) 82, 394
Cac8I GCNNGC 1 cut(s) 243
Csp6I GTAC 2 cut(s) 550, 576
CviAII CATG 3 cut(s) 187, 547, 714
CviQI GTAC 2 cut(s) 550, 576
DdeI CTNAG 4 cut(s) 237, 312, 386, 497
DpnI GATC 3 cut(s) 98, 405, 631
DpnII GATC 3 cut(s) 96, 403, 629
EaeI YGGCCR 1 cut(s) 696
EagI CGGCCG 1 cut(s) 696
EclXI CGGCCG 1 cut(s) 696
Eco130I CCWWGG 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 19
Eco52I CGGCCG 1 cut(s) 696
Eco57I CTGAAG 1 cut(s) 654
EcoRI GAATTC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 3 cut(s) 190, 550, 717
FaiI YATR 8 cut(s) 143, 155, 188, 224, 272, 321, 548, 715
FatI CATG 3 cut(s) 186, 546, 713
Fnu4HI GCNGC 5 cut(s) 150, 169, 234, 246, 524
FokI GGATG 2 cut(s) 134, 314
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 5 cut(s) 150, 169, 234, 246, 524
GluI GCNGC 5 cut(s) 150, 169, 234, 246, 524
GsuI CTGGAG 1 cut(s) 661
HaeIII GGCC 1 cut(s) 698
HapII CCGG 2 cut(s) 15, 699
Hin1II CATG 3 cut(s) 190, 550, 717
HinfI GANTC 1 cut(s) 65
HpaII CCGG 2 cut(s) 15, 699
HphI GGTGA 6 cut(s) 192, 433, 438, 473, 569, 660
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 5 cut(s) 64, 257, 313, 490, 634
Hpy8I GTNNAC 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 5 cut(s) 194, 233, 516, 573, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 704
HpyF3I CTNAG 4 cut(s) 237, 312, 386, 497
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 3 cut(s) 190, 550, 717
Kzo9I GATC 3 cut(s) 96, 403, 629
LmnI GCTCC 2 cut(s) 288, 680
LpnPI CCDG 8 cut(s) 28, 88, 121, 255, 521, 671, 691, 712
Lsp1109I GCAGC 5 cut(s) 136, 180, 232, 245, 535
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 3 cut(s) 77, 198, 587
MalI GATC 3 cut(s) 98, 405, 631
MboI GATC 3 cut(s) 96, 403, 629
MboII GAAGA 3 cut(s) 78, 477, 682
MflI RGATCY 1 cut(s) 629
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 8 cut(s) 69, 91, 112, 216, 250, 305, 349, 610
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 5 cut(s) 112, 251, 412, 548, 693
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 545
MspI CCGG 2 cut(s) 15, 699
MspR9I CCNGG 2 cut(s) 16, 700
Mva1269I GAATGC 1 cut(s) 587
MwoI GCNNNNNNNGC 2 cut(s) 242, 704
NciI CCSGG 2 cut(s) 16, 700
NdeII GATC 3 cut(s) 96, 403, 629
NlaIII CATG 3 cut(s) 190, 550, 717
NmeAIII GCCGAG 1 cut(s) 674
NmuCI GTSAC 3 cut(s) 77, 198, 587
NspV TTCGAA 2 cut(s) 89, 601
PctI GAATGC 1 cut(s) 587
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 5 cut(s) 151, 170, 235, 247, 525
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 629
RsaI GTAC 2 cut(s) 551, 577
RsaNI GTAC 2 cut(s) 550, 576
RseI CAYNNNNRTG 1 cut(s) 545
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 5 cut(s) 150, 169, 234, 246, 524
Sau3AI GATC 3 cut(s) 96, 403, 629
ScaI AGTACT 1 cut(s) 577
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 16, 700
SduI GDGCHC 1 cut(s) 215
SfcI CTRYAG 1 cut(s) 231
SfuI TTCGAA 2 cut(s) 89, 601
SmiMI CAYNNNNRTG 1 cut(s) 545
Sse9I AATT 8 cut(s) 69, 91, 112, 216, 250, 305, 349, 610
StyD4I CCNGG 2 cut(s) 14, 698
StyI CCWWGG 1 cut(s) 286
TaiI ACGT 1 cut(s) 367
TaqI TCGA 5 cut(s) 89, 95, 117, 209, 601
TasI AATT 8 cut(s) 69, 91, 112, 216, 250, 305, 349, 610
TatI WGTACW 2 cut(s) 549, 575
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 2 cut(s) 82, 394
TseFI GTSAC 3 cut(s) 77, 198, 587
TseI GCWGC 5 cut(s) 149, 168, 233, 245, 523
Tsp45I GTSAC 3 cut(s) 77, 198, 587
TspDTI ATGAA 2 cut(s) 318, 535
TspRI CASTG 2 cut(s) 82, 394
XapI RAATTY 2 cut(s) 91, 112
ZrmI AGTACT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.