Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009421

Physical Location & Seq

Genomic Coordinates Forward (+)

7280229 .. 7283582

Gene Structure 3354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07770.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGGGTGCATTCTCACCAAAGACAACACAAACAACCACTGCTCTGTTCAACCCATCATCTGAAAGAACTTCGACTTCTCATTTGTCACTCTTCAAGAACTCAATTTTAGATGCCAGTGGGTTTTCTTCAAAGCAAACTTCGTTTCTCAGAGGTCAGTTTTGTAGCAGACATTTTGTTGGGTTTTACTGCAAACCTACTCAAAGAAAACAACCAGGGCATGTTGTTTCACCAAGCTGTGTCCTTCCCTTGACTGAAGAAAACGTGGAGAAAGTATTGGATGAGGTACGACCTAGTTTGATGGCAGATGGAGGGAATGTGGCACTACATGAGATAGATGGCCTTGTAGTGGTATTAAAACTTGAAGGAGCTTGTGGATCATGCCCCAGCTCCACTATGACACTAAAGATGGGAATCGAAACTCGCCTGCGTGATAAAATACCAGAGATTATGGAAGTGGAGCAGATTCTGGACACTGAGACGGGCCTTGATCTGAACGAGGAAAATGTTGAAAAGCTTCTTGCGGAGATTAGGCCATATCTGGCGGGCACAGGAGGTGGAATTCTGGAGCTTGTAGAGATCAAAGACTACATTGTTAAAGTTCGGTTAAGTGGACCAGCAGCTGGGGTCATGACAGTACGTGTTGCTCTAACTCAGAAACTGAGAGAAAAAATACCTGTAATAGCAGCTGTGCAGCTGATAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0032947 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

236

Amino Acids

25.56

Weight (kDa)

5.89

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU	PF01106	68 - 133	2.8e-26	NifU-like domain
NifU	PF01106	149 - 210	1.8e-10	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25910
fragaria_vesca	FvH4_4g07770 FvH4_4g07770 FvH4_4g07770
malus_domestica	MD16G1254000.v1.1
prunus_persica	Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1
pyrus_communis	pycom16g21590
rosa_chinensis	RchiOBHm_Chr4g0400851
rosa_laevigata	RLG00000009172
rosa_multiflora	Rmu_sc0004401.1_g000015 Rmu_sc0018346.1_g000004
rosa_roxburghii	Rroxscaffold_5G00345740
rosa_rugosa	Rorug04G0026300 Rorug04G0026400
rosa_samantha	Rh4AG104400 Rh4BG099600 Rh4CG112800 Rh4DG096500
rosa_wichuraiana	Rw4G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	623
AciI	CCGC	2 cut(s)	524, 545
AclWI	GGATC	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	2 cut(s)	288, 639
AfiI	CCNNNNNNNGG	2 cut(s)	349, 623
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	5 cut(s)	52, 97, 132, 365, 512
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	8 cut(s)	237, 371, 390, 517, 571, 623, 689, 697
AluI	AGCT	8 cut(s)	237, 371, 390, 517, 571, 623, 689, 697
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	385
AlwNI	CAGNNNCTG	3 cut(s)	469, 623, 661
AoxI	GGCC	3 cut(s)	340, 484, 533
ApeKI	GCWGC	3 cut(s)	620, 686, 694
ApoI	RAATTY	1 cut(s)	561
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
Asp700I	GAANNNNTTC	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	484, 614
AsuHPI	GGTGA	2 cut(s)	9, 222
AvaII	GGWCC	1 cut(s)	614
BaeGI	GKGCMC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	632, 698
BccI	CCATC	5 cut(s)	64, 295, 302, 332, 403
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	1 cut(s)	294
BisI	GCNGC	3 cut(s)	621, 687, 695
BlsI	GCNGC	3 cut(s)	622, 688, 696
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	484, 614
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	587
BsaAI	YACGTR	1 cut(s)	641
BsaBI	GATNNNNATC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 623
Bse1I	ACTGG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	2 cut(s)	349, 623
BseMII	CTCAG	4 cut(s)	163, 468, 653, 668
BseNI	ACTGG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	632, 698
BseYI	CCCAGC	2 cut(s)	386, 623
BshFI	GGCC	3 cut(s)	342, 486, 535
BslI	CCNNNNNNNGG	2 cut(s)	349, 623
BsmAI	GTCTC	1 cut(s)	473
BsmBI	CGTCTC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	342, 486, 535
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	3 cut(s)	377, 490, 579
BspACI	CCGC	2 cut(s)	524, 545
BspANI	GGCC	3 cut(s)	342, 486, 535
BspCNI	CTCAG	4 cut(s)	162, 469, 654, 667
BspHI	TCATGA	1 cut(s)	630
BspPI	GGATC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	3 cut(s)	377, 490, 579
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	428, 547
BstDEI	CTNAG	4 cut(s)	149, 477, 654, 662
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	3 cut(s)	380, 493, 582
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	3 cut(s)	377, 490, 579
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	551
BstV1I	GCAGC	2 cut(s)	632, 698
BsuRI	GGCC	3 cut(s)	342, 486, 535
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	39, 124, 474
Cac8I	GCNNGC	2 cut(s)	428, 547
CaiI	CAGNNNCTG	3 cut(s)	469, 623, 661
CciI	TCATGA	1 cut(s)	630
Cfr13I	GGNCC	2 cut(s)	484, 614
Csp6I	GTAC	2 cut(s)	287, 638
CviAII	CATG	4 cut(s)	221, 329, 381, 631
CviQI	GTAC	2 cut(s)	287, 638
DdeI	CTNAG	4 cut(s)	149, 477, 654, 662
DpnI	GATC	3 cut(s)	379, 492, 581
DpnII	GATC	3 cut(s)	377, 490, 579
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	4 cut(s)	224, 332, 384, 634
FaiI	YATR	7 cut(s)	222, 330, 382, 398, 452, 538, 632
FatI	CATG	4 cut(s)	220, 328, 380, 630
FauI	CCCGC	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	621, 687, 695
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	621, 687, 695
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	3 cut(s)	621, 687, 695
GsaI	CCCAGC	2 cut(s)	390, 627
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	3 cut(s)	342, 486, 535
Hin1II	CATG	4 cut(s)	224, 332, 384, 634
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	2 cut(s)	414, 466
HphI	GGTGA	2 cut(s)	9, 222
Hpy166II	GTNNAC	1 cut(s)	614
Hpy188I	TCNGA	4 cut(s)	64, 152, 495, 657
Hpy188III	TCNNGA	4 cut(s)	97, 470, 566, 631
Hpy8I	GTNNAC	1 cut(s)	614
HpyAV	CCTTC	2 cut(s)	254, 359
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	2 cut(s)	264, 640
HpyCH4V	TGCA	3 cut(s)	11, 192, 694
HpyF3I	CTNAG	4 cut(s)	149, 477, 654, 662
HpySE526I	ACGT	2 cut(s)	264, 640
Hsp92II	CATG	4 cut(s)	224, 332, 384, 634
Kzo9I	GATC	3 cut(s)	377, 490, 579
LmnI	GCTCC	4 cut(s)	368, 395, 460, 568
Lsp1109I	GCAGC	2 cut(s)	632, 698
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	2 cut(s)	264, 640
MaeIII	GTNAC	1 cut(s)	87
MalI	GATC	3 cut(s)	379, 492, 581
MboI	GATC	3 cut(s)	377, 490, 579
MboII	GAAGA	3 cut(s)	85, 120, 269
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	2 cut(s)	105, 561
MnlI	CCTC	5 cut(s)	146, 277, 305, 493, 548
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	3 cut(s)	356, 597, 608
MspA1I	CMGCKG	3 cut(s)	623, 689, 697
MspR9I	CCNGG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	377, 490, 579
NlaIII	CATG	4 cut(s)	224, 332, 384, 634
NmuCI	GTSAC	1 cut(s)	87
NspI	RCATGY	1 cut(s)	224
PagI	TCATGA	1 cut(s)	630
PctI	GAATGC	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	414, 466
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	3 cut(s)	622, 688, 696
Ppu21I	YACGTR	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	214
PspFI	CCCAGC	2 cut(s)	386, 623
PspGI	CCWGG	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	484, 614
PstNI	CAGNNNCTG	3 cut(s)	469, 623, 661
PvuII	CAGCTG	3 cut(s)	623, 689, 697
RsaI	GTAC	2 cut(s)	288, 639
RsaNI	GTAC	2 cut(s)	287, 638
SaqAI	TTAA	3 cut(s)	356, 597, 608
SatI	GCNGC	3 cut(s)	621, 687, 695
Sau3AI	GATC	3 cut(s)	377, 490, 579
Sau96I	GGNCC	2 cut(s)	484, 614
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	551
SfaNI	GCATC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	614
Sse9I	AATT	2 cut(s)	105, 561
SsiI	CCGC	2 cut(s)	524, 545
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	2 cut(s)	267, 643
TaqI	TCGA	2 cut(s)	74, 417
TasI	AATT	2 cut(s)	105, 561
TfiI	GAWTC	2 cut(s)	414, 466
Tru1I	TTAA	3 cut(s)	356, 597, 608
Tru9I	TTAA	3 cut(s)	356, 597, 608
TscAI	CASTG	3 cut(s)	46, 124, 481
TseFI	GTSAC	1 cut(s)	87
TseI	GCWGC	3 cut(s)	620, 686, 694
Tsp45I	GTSAC	1 cut(s)	87
TspRI	CASTG	3 cut(s)	46, 124, 481
Van91I	CCANNNNNTGG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	1 cut(s)	561
XceI	RCATGY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.