Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009421

Physical Location & Seq

Genomic Coordinates Forward (+)

18749372 .. 18753484

Gene Structure 4113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37284

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGGGTGCATTCTCACCAAAGACAACACAAACGACCACTGCTCTGTTTAACCCATCGTCTGAAAGAACTTCAACTTCTCATTTCTCACTCTCCAAGAACTCAGTTGTAGATGCCAGTGGATTTTCTTCAAACCAAACTTGTTTTCTCAGAGGTCAGTTCTGTAGCAGACATTTTGTTGGGTTTTACTGCAAACCTGCTCGAAGAAAACAACCAGGGCATGTTGTTTCTCCAAACTGTGTTCTTCCTTTAACCGAAGAAAATGTGGAGAGAGTATTGGATGAGGTACGACCTGGCTTGATGGCAGATGGAGGGAATGTGGCACTACATGAGATAGATGGCCTTGTTGTGGTATTAAAACTACAAGGAGCTTGTGGATCATGTCCAAGCTCGACTATGACACTAAAGATGGGAATCGAAACTCGCCTGCGTGATAAAATACCAGAGATTATGGAAGTGGAGCAGATTCTGGACACTGAGACGGGCCTTGAGCTCAATGAGGAAAATGTCGAAATGCTTCTTGCCGAGATTAGGCCATATCTGGCTGGCACAGGAGGTGGAATTCTGGAGCTTTTAGAGATCAAAGACTACATTGTCAAAGTTCGGTTAAGTGGACCAGCAGCTGGGGTCATGACAGTTCGTGTTGCTCTAACTCAGAAACTGAGAGAAAAAATACCTGTAATAGCAGCTGTGCAGCTGATAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0032947 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

235

Amino Acids

25.56

Weight (kDa)

5.89

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU	PF01106	89 - 154	4.1e-26	NifU-like domain
NifU	PF01106	170 - 231	2.1e-09	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25910
fragaria_vesca	FvH4_4g07770 FvH4_4g07770 FvH4_4g07770
malus_domestica	MD16G1254000.v1.1
prunus_persica	Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1
pyrus_communis	pycom16g21590
rosa_chinensis	RchiOBHm_Chr4g0400851
rosa_laevigata	RLG00000009172
rosa_multiflora	Rmu_sc0004401.1_g000015 Rmu_sc0018346.1_g000004
rosa_roxburghii	Rroxscaffold_5G00345740
rosa_rugosa	Rorug04G0026300 Rorug04G0026400
rosa_samantha	Rh4AG104400 Rh4BG099600 Rh4CG112800 Rh4DG096500
rosa_wichuraiana	Rw4G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	593
Acc36I	ACCTGC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	623
AclWI	GGATC	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	561
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	3 cut(s)	349, 531, 623
AgsI	TTSAA	2 cut(s)	75, 132
AjnI	CCWGG	2 cut(s)	214, 292
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	7 cut(s)	371, 390, 493, 571, 623, 689, 697
AluI	AGCT	7 cut(s)	371, 390, 493, 571, 623, 689, 697
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	385
AlwNI	CAGNNNCTG	3 cut(s)	469, 623, 661
AoxI	GGCC	3 cut(s)	340, 484, 533
ApeKI	GCWGC	3 cut(s)	620, 686, 694
ApoI	RAATTY	1 cut(s)	561
Asp700I	GAANNNNTTC	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	484, 614
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	2 cut(s)	632, 698
BccI	CCATC	5 cut(s)	64, 295, 302, 332, 403
BciT130I	CCWGG	2 cut(s)	216, 294
BcoDI	GTCTC	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	3 cut(s)	621, 687, 695
BlsI	GCNGC	3 cut(s)	622, 688, 696
Bme1390I	CCNGG	2 cut(s)	216, 294
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	484, 614
BmrFI	CCNGG	2 cut(s)	216, 294
BmsI	GCATC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 531, 623
Bse1I	ACTGG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	2 cut(s)	216, 294
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	3 cut(s)	349, 531, 623
BseMII	CTCAG	5 cut(s)	117, 163, 468, 653, 668
BseNI	ACTGG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	632, 698
BseYI	CCCAGC	1 cut(s)	623
BshFI	GGCC	3 cut(s)	342, 486, 535
BsiHKAI	GWGCWC	1 cut(s)	495
BslI	CCNNNNNNNGG	3 cut(s)	349, 531, 623
BsmAI	GTCTC	1 cut(s)	473
BsmBI	CGTCTC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	342, 486, 535
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	377, 579
BspANI	GGCC	3 cut(s)	342, 486, 535
BspCNI	CTCAG	5 cut(s)	116, 162, 469, 654, 667
BspHI	TCATGA	1 cut(s)	630
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	377, 579
Bst2UI	CCWGG	2 cut(s)	216, 294
Bst4CI	ACNGT	2 cut(s)	239, 637
BstC8I	GCNNGC	2 cut(s)	428, 547
BstDEI	CTNAG	5 cut(s)	103, 149, 477, 654, 662
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	2 cut(s)	380, 582
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	2 cut(s)	377, 579
BstNI	CCWGG	2 cut(s)	216, 294
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	214, 292
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	632, 698
BsuRI	GGCC	3 cut(s)	342, 486, 535
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	39, 124, 474
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	428, 547
CaiI	CAGNNNCTG	3 cut(s)	469, 623, 661
CciI	TCATGA	1 cut(s)	630
Cfr13I	GGNCC	2 cut(s)	484, 614
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	4 cut(s)	221, 329, 381, 631
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	5 cut(s)	103, 149, 477, 654, 662
DpnI	GATC	2 cut(s)	379, 581
DpnII	GATC	2 cut(s)	377, 579
DrdI	GACNNNNNNGTC	1 cut(s)	593
DseDI	GACNNNNNNGTC	1 cut(s)	593
Ecl136II	GAGCTC	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	614
Eco53kI	GAGCTC	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	214, 292
EcoT38I	GRGCYC	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	4 cut(s)	224, 332, 384, 634
FaiI	YATR	7 cut(s)	222, 330, 382, 398, 452, 538, 632
FatI	CATG	4 cut(s)	220, 328, 380, 630
Fnu4HI	GCNGC	3 cut(s)	621, 687, 695
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	3 cut(s)	621, 687, 695
GluI	GCNGC	3 cut(s)	621, 687, 695
GsaI	CCCAGC	1 cut(s)	627
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	3 cut(s)	342, 486, 535
Hin1II	CATG	4 cut(s)	224, 332, 384, 634
HinfI	GANTC	2 cut(s)	414, 466
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	614
Hpy188I	TCNGA	3 cut(s)	64, 152, 657
Hpy188III	TCNNGA	3 cut(s)	470, 566, 631
Hpy8I	GTNNAC	1 cut(s)	614
HpyCH4III	ACNGT	2 cut(s)	239, 637
HpyCH4V	TGCA	3 cut(s)	11, 192, 694
HpyF3I	CTNAG	5 cut(s)	103, 149, 477, 654, 662
Hsp92II	CATG	4 cut(s)	224, 332, 384, 634
Kzo9I	GATC	2 cut(s)	377, 579
LmnI	GCTCC	3 cut(s)	368, 460, 568
Lsp1109I	GCAGC	2 cut(s)	632, 698
LweI	GCATC	1 cut(s)	103
MalI	GATC	2 cut(s)	379, 581
MboI	GATC	2 cut(s)	377, 579
MboII	GAAGA	4 cut(s)	120, 216, 236, 269
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	1 cut(s)	561
MnlI	CCTC	5 cut(s)	146, 277, 305, 493, 548
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	4 cut(s)	51, 251, 356, 608
MspA1I	CMGCKG	3 cut(s)	623, 689, 697
MspR9I	CCNGG	2 cut(s)	216, 294
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	2 cut(s)	216, 294
NdeII	GATC	2 cut(s)	377, 579
NlaIII	CATG	4 cut(s)	224, 332, 384, 634
NmeAIII	GCCGAG	1 cut(s)	550
NspI	RCATGY	1 cut(s)	224
PagI	TCATGA	1 cut(s)	630
PctI	GAATGC	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	414, 466
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	3 cut(s)	622, 688, 696
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	214, 292
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	2 cut(s)	214, 292
PspPI	GGNCC	2 cut(s)	484, 614
PstNI	CAGNNNCTG	3 cut(s)	469, 623, 661
PvuII	CAGCTG	3 cut(s)	623, 689, 697
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	51, 251, 356, 608
SatI	GCNGC	3 cut(s)	621, 687, 695
Sau3AI	GATC	2 cut(s)	377, 579
Sau96I	GGNCC	2 cut(s)	484, 614
ScrFI	CCNGG	2 cut(s)	216, 294
SduI	GDGCHC	1 cut(s)	495
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	1 cut(s)	561
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	214, 292
TaaI	ACNGT	2 cut(s)	239, 637
TaqI	TCGA	4 cut(s)	202, 392, 417, 510
TasI	AATT	1 cut(s)	561
TfiI	GAWTC	2 cut(s)	414, 466
Tru1I	TTAA	4 cut(s)	51, 251, 356, 608
Tru9I	TTAA	4 cut(s)	51, 251, 356, 608
TscAI	CASTG	3 cut(s)	46, 124, 481
TseI	GCWGC	3 cut(s)	620, 686, 694
TspRI	CASTG	3 cut(s)	46, 124, 481
Van91I	CCANNNNNTGG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	1 cut(s)	561
XceI	RCATGY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.