Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009421

Physical Location & Seq

Genomic Coordinates Reverse (-)

3617381 .. 3619340

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0026300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATGAAAGAGGAGGCGGCGCCACTGGCGAGCCTGGAGGCTTCGGCCGCGGAATCAGAGGCTTCAAGGTCTTTGTCGTCGTCGGCGACAGCAAAAGCCATGTCGGACTCGGCATCAAGTGCAGCAAGGAGGTTGCTACTGCTATTCGTGGAGCCATTATTGTGGCTAAGCTGTGGGTGATTCCTGTGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCATGCATTGCAAGGTCACCGGAAAGTGTGGCTCTGTTATCGTGGGGATGGTGCTTGCTCCTCGTGGTTCTGGTATTATGGTGGCTAGGGTTCCCAAGAAGGTGTTCCAATTTGCTGGAATAATGATTGAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAATGGAAAGTCACCGGTTAAGAAGCAAAGTTCTGGAGAATTACAAAGCATTGGCTATGTCACTGGCCAAGTTACTAGCCATGTCACTGTTAATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0032947 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

164

Amino Acids

17.37

Weight (kDa)

10.24

Isoelectric Point (pI)

18.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	19 - 64	1.1e-15	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	81 - 115	1.2e-06	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25910
fragaria_vesca	FvH4_4g07770 FvH4_4g07770 FvH4_4g07770
malus_domestica	MD16G1254000.v1.1
prunus_persica	Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1
pyrus_communis	pycom16g21590
rosa_chinensis	RchiOBHm_Chr4g0400851
rosa_laevigata	RLG00000009172
rosa_multiflora	Rmu_sc0004401.1_g000015 Rmu_sc0018346.1_g000004
rosa_roxburghii	Rroxscaffold_5G00345740
rosa_rugosa	Rorug04G0026300 Rorug04G0026400
rosa_samantha	Rh4AG104400 Rh4BG099600 Rh4CG112800 Rh4DG096500
rosa_wichuraiana	Rw4G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccII	CGCG	1 cut(s)	51
AciI	CCGC	3 cut(s)	18, 49, 51
AcoI	YGGCCR	2 cut(s)	46, 460
AcyI	GRCGYC	1 cut(s)	21
AgeI	ACCGGT	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	3 cut(s)	172, 352, 382
AluI	AGCT	3 cut(s)	172, 352, 382
AoxI	GGCC	2 cut(s)	46, 460
ApeKI	GCWGC	1 cut(s)	123
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AsiGI	ACCGGT	1 cut(s)	409
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	3 cut(s)	190, 229, 399
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	36
BfaI	CTAG	2 cut(s)	306, 471
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	3 cut(s)	19, 49, 124
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	3 cut(s)	20, 50, 125
Bme1390I	CCNGG	1 cut(s)	36
BmiI	GGNNCC	3 cut(s)	22, 154, 312
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	123
BpmI	CTGGAG	2 cut(s)	57, 450
Bpu1102I	GCTNAGC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	2 cut(s)	239, 409
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	31, 463
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	10, 273
BseMI	GCAATG	1 cut(s)	226
BseNI	ACTGG	2 cut(s)	31, 463
BseRI	GAGGAG	3 cut(s)	27, 205, 270
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	48, 462
BshNI	GGYRCC	1 cut(s)	20
BshTI	ACCGGT	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	240, 410
BsnI	GGCC	2 cut(s)	48, 462
Bsp143I	GATC	1 cut(s)	204
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	3 cut(s)	18, 49, 51
BspANI	GGCC	2 cut(s)	48, 462
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	22, 154, 312
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	31, 463
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	1 cut(s)	204
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	484
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	3 cut(s)	32, 276, 384
BstDEI	CTNAG	2 cut(s)	168, 492
BstDSI	CCRYGG	1 cut(s)	49
BstEII	GGTNACC	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	10, 273
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 48, 120, 379, 392
BstNI	CCWGG	1 cut(s)	36
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	135
BstXI	CCANNNNNNTGG	2 cut(s)	163, 335
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	48, 462
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	10, 273
BtsIMutI	CAGTG	3 cut(s)	24, 456, 480
Cac8I	GCNNGC	3 cut(s)	32, 276, 384
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	409
Cfr42I	CCGCGG	1 cut(s)	52
CspAI	ACCGGT	1 cut(s)	409
CviAII	CATG	3 cut(s)	101, 223, 476
DdeI	CTNAG	2 cut(s)	168, 492
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
DraI	TTTAAA	1 cut(s)	358
EaeI	YGGCCR	2 cut(s)	46, 460
EagI	CGGCCG	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	46
Eco52I	CGGCCG	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaeI	CATG	3 cut(s)	104, 226, 479
FaiI	YATR	5 cut(s)	102, 224, 299, 453, 477
FatI	CATG	3 cut(s)	100, 222, 475
Fnu4HI	GCNGC	3 cut(s)	19, 49, 124
FokI	GGATG	2 cut(s)	17, 280
Fsp4HI	GCNGC	3 cut(s)	19, 49, 124
FspBI	CTAG	2 cut(s)	306, 471
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	19, 49, 124
GsuI	CTGGAG	2 cut(s)	57, 450
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	48, 462
HapII	CCGG	2 cut(s)	240, 410
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	104, 226, 479
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	3 cut(s)	54, 108, 181
HpaII	CCGG	2 cut(s)	240, 410
HphI	GGTGA	3 cut(s)	190, 229, 399
Hpy188I	TCNGA	3 cut(s)	59, 107, 209
Hpy188III	TCNNGA	1 cut(s)	429
Hpy99I	CGWCG	2 cut(s)	83, 86
HpyAV	CCTTC	2 cut(s)	313, 358
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	3 cut(s)	123, 226, 231
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 48, 120, 379, 392
HpyF3I	CTNAG	2 cut(s)	168, 492
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	104, 226, 479
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	3 cut(s)	152, 283, 379
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	306, 471
MaeIII	GTNAC	6 cut(s)	197, 235, 405, 454, 466, 478
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	2 cut(s)	329, 434
MluNI	TGGCCA	1 cut(s)	462
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	9 cut(s)	5, 8, 32, 53, 124, 183, 186, 291, 369
Mox20I	TGGCCA	1 cut(s)	462
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	3 cut(s)	357, 414, 486
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	2 cut(s)	240, 410
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	5 cut(s)	27, 48, 120, 379, 392
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	3 cut(s)	104, 226, 479
NlaIV	GGNNCC	3 cut(s)	22, 154, 312
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	4 cut(s)	235, 405, 454, 478
NsiI	ATGCAT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	54, 181
PinAI	ACCGGT	1 cut(s)	409
PkrI	GCNGC	3 cut(s)	20, 50, 125
PleI	GAGTC	1 cut(s)	102
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	34
PspEI	GGTNACC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	3 cut(s)	22, 154, 312
RseI	CAYNNNNRTG	1 cut(s)	161
SacII	CCGCGG	1 cut(s)	52
SaqAI	TTAA	3 cut(s)	357, 414, 486
SatI	GCNGC	3 cut(s)	19, 49, 124
Sau3AI	GATC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	7 cut(s)	72, 135, 174, 237, 324, 354, 384
SfaNI	GCATC	1 cut(s)	123
SfoI	GGCGCC	1 cut(s)	22
Sfr303I	CCGCGG	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	329, 434
SsiI	CCGC	3 cut(s)	18, 49, 51
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	2 cut(s)	306, 471
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	484
TasI	AATT	2 cut(s)	329, 434
TauI	GCSGC	2 cut(s)	21, 51
TfiI	GAWTC	2 cut(s)	54, 181
Tru1I	TTAA	3 cut(s)	357, 414, 486
Tru9I	TTAA	3 cut(s)	357, 414, 486
TscAI	CASTG	3 cut(s)	31, 463, 487
TseFI	GTSAC	4 cut(s)	235, 405, 454, 478
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	4 cut(s)	235, 405, 454, 478
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	3 cut(s)	31, 463, 487
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	2 cut(s)	306, 471
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.