Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009421

Physical Location & Seq

Genomic Coordinates Forward (+)

6034796 .. 6039777

Gene Structure 4982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G081800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTGGGTGCATTCTCAGGCCAAACCCAAGGTCTCAAGCCAACAACACCACCAGCAACCACTGCTCTGTTCAACCCATCTCTCTCATCATCATCTGAACTGCTTTCAACTTCTCATCTATCACTCTTCAAGAACTCCACTTCAATTGCCTGTGGATTTTCTTCAAAGCAAGCTTCTTTTCTCAGAGGTCAATTCTGTAGCAGACACTTTCTTGGGTTTGATTACAATCTTGCTCGAAGAAAACAAGCAGGGCATGTTGTTTCACCATACTGCATCCTTCCGTTAACTGAAGAAAATGTAGAGAAAGTCTTGGATGAGGTACGACCTGGCTTGATGGCTGATGGTGGGAATGTGGCACTACATGAGATAGATGGCCTTGTTGTGGTATTAAAACTGCAAGGAGCTTGTGGGTCATGTCCAAGCTCAACAATGACACTAAAGATGGGAATTGAGACCCGCCTGCGAGATAAAATACCCGAGATTATGGAAGTAGAACAGATTCTGGACAGAGAGACAGGTCTTGAGCTAAATGAGGAAAATGTAGAAAAGGTTCTTTCTGAGATTAGACCATATCTTGCTGGCACAGGAGGTGGGATCCTGGAGCTTGTACAGATCAATGACTACGTCGTCAAAGTTCGGTTAAGTGGACCAGCAGCCGGGGTCATGACAAGAATGGAAAAATTGTTCGGCCAGTTTTTGTTGCATTATACTCATCAACGCCTGAAAATACATGGTTCCTCGTTACATTTGAATCTCCTTGCAACAGCAGCAACAGCACCAAGAAACGCAAAGAAAGCTAAGAGTTGGAAGCCACCACCAATGCCGACGGCAACACTAGGACCTGGGGCAAAAAATGAAAATGGTGACCAACCCCAGCCTCCAAAGAATGGTACTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0032947 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

300

Amino Acids

32.29

Weight (kDa)

8.75

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25910
fragaria_vesca	FvH4_4g07770 FvH4_4g07770 FvH4_4g07770
malus_domestica	MD16G1254000.v1.1
prunus_persica	Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1
pyrus_communis	pycom16g21590
rosa_chinensis	RchiOBHm_Chr4g0400851
rosa_laevigata	RLG00000009172
rosa_multiflora	Rmu_sc0004401.1_g000015 Rmu_sc0018346.1_g000004
rosa_roxburghii	Rroxscaffold_5G00345740
rosa_rugosa	Rorug04G0026300 Rorug04G0026400
rosa_samantha	Rh4AG104400 Rh4BG099600 Rh4CG112800 Rh4DG096500
rosa_wichuraiana	Rw4G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	626
AccB7I	CCANNNNNTGG	1 cut(s)	887
AciI	CCGC	1 cut(s)	457
AclWI	GGATC	2 cut(s)	589, 602
AcoI	YGGCCR	1 cut(s)	688
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	3 cut(s)	321, 609, 892
AfiI	CCNNNNNNNGG	3 cut(s)	382, 656, 887
AgsI	TTSAA	6 cut(s)	73, 108, 130, 144, 165, 751
AjnI	CCWGG	3 cut(s)	325, 597, 841
AloI	GAACNNNNNNTCC	2 cut(s)	668, 700
AluBI	AGCT	6 cut(s)	173, 404, 423, 526, 604, 797
AluI	AGCT	6 cut(s)	173, 404, 423, 526, 604, 797
Alw26I	GTCTC	3 cut(s)	38, 446, 506
AlwI	GGATC	2 cut(s)	589, 602
AlwNI	CAGNNNCTG	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	3 cut(s)	19, 373, 688
ApeKI	GCWGC	2 cut(s)	653, 767
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
Asp700I	GAANNNNTTC	2 cut(s)	498, 549
AspS9I	GGNCC	2 cut(s)	647, 839
AsuC2I	CCSGG	1 cut(s)	658
AsuHPI	GGTGA	2 cut(s)	255, 875
AvaI	CYCGRG	1 cut(s)	476
AvaII	GGWCC	2 cut(s)	647, 839
BamHI	GGATCC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	665, 779
BccI	CCATC	5 cut(s)	85, 328, 335, 365, 436
BceAI	ACGGC	1 cut(s)	843
BciT130I	CCWGG	3 cut(s)	327, 599, 843
BcnI	CCSGG	1 cut(s)	658
BcoDI	GTCTC	3 cut(s)	38, 446, 506
BfaI	CTAG	1 cut(s)	836
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	2 cut(s)	654, 768
BlsI	GCNGC	2 cut(s)	655, 769
Bme1390I	CCNGG	4 cut(s)	327, 599, 658, 843
Bme18I	GGWCC	2 cut(s)	647, 839
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	2 cut(s)	647, 839
BmiI	GGNNCC	2 cut(s)	596, 736
BmrFI	CCNGG	4 cut(s)	327, 599, 658, 843
BmsI	GCATC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	620
BpuEI	CTTGAG	2 cut(s)	20, 542
BpuMI	CCSGG	1 cut(s)	658
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	2 cut(s)	38, 446
BsaJI	CCNNGG	3 cut(s)	28, 657, 842
Bsc4I	CCNNNNNNNGG	3 cut(s)	382, 656, 887
Bse1I	ACTGG	1 cut(s)	691
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	3 cut(s)	327, 599, 843
BseDI	CCNNGG	3 cut(s)	28, 657, 842
BseGI	GGATG	2 cut(s)	273, 319
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	382, 656, 887
BseMII	CTCAG	3 cut(s)	30, 196, 549
BseNI	ACTGG	1 cut(s)	691
BseXI	GCAGC	2 cut(s)	665, 779
BseYI	CCCAGC	1 cut(s)	873
BshFI	GGCC	3 cut(s)	21, 375, 690
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	657
BslI	CCNNNNNNNGG	3 cut(s)	382, 656, 887
BsmAI	GTCTC	3 cut(s)	38, 446, 506
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	21, 375, 690
Bso31I	GGTCTC	2 cut(s)	38, 446
BsoBI	CYCGRG	1 cut(s)	476
Bsp1407I	TGTACA	1 cut(s)	607
Bsp143I	GATC	2 cut(s)	594, 612
BspACI	CCGC	1 cut(s)	457
BspANI	GGCC	3 cut(s)	21, 375, 690
BspCNI	CTCAG	3 cut(s)	29, 195, 550
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	2 cut(s)	596, 736
BspPI	GGATC	2 cut(s)	589, 602
BspTNI	GGTCTC	2 cut(s)	38, 446
BsrGI	TGTACA	1 cut(s)	607
BsrI	ACTGG	1 cut(s)	691
BssECI	CCNNGG	3 cut(s)	28, 657, 842
BssMI	GATC	2 cut(s)	594, 612
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	3 cut(s)	327, 599, 843
Bst6I	CTCTTC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstAUI	TGTACA	1 cut(s)	607
BstC8I	GCNNGC	3 cut(s)	171, 461, 580
BstDEI	CTNAG	4 cut(s)	16, 182, 558, 798
BstEII	GGTNACC	1 cut(s)	863
BstF5I	GGATG	2 cut(s)	273, 319
BstKTI	GATC	2 cut(s)	597, 615
BstMAI	GTCTC	3 cut(s)	38, 446, 506
BstMBI	GATC	2 cut(s)	594, 612
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 767, 773, 794
BstNI	CCWGG	3 cut(s)	327, 599, 843
BstNSI	RCATGY	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	863
BstSCI	CCNGG	4 cut(s)	325, 597, 656, 841
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	665, 779
BstX2I	RGATCY	1 cut(s)	594
BstYI	RGATCY	1 cut(s)	594
BsuRI	GGCC	3 cut(s)	21, 375, 690
BtsCI	GGATG	2 cut(s)	273, 319
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	3 cut(s)	171, 461, 580
CaiI	CAGNNNCTG	1 cut(s)	502
CciI	TCATGA	1 cut(s)	663
Cfr13I	GGNCC	2 cut(s)	647, 839
Csp6I	GTAC	3 cut(s)	320, 608, 891
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	5 cut(s)	254, 362, 414, 664, 731
CviQI	GTAC	3 cut(s)	320, 608, 891
DdeI	CTNAG	4 cut(s)	16, 182, 558, 798
DpnI	GATC	2 cut(s)	596, 614
DpnII	GATC	2 cut(s)	594, 612
DrdI	GACNNNNNNGTC	1 cut(s)	626
DseDI	GACNNNNNNGTC	1 cut(s)	626
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	28
Eco31I	GGTCTC	2 cut(s)	38, 446
Eco47I	GGWCC	2 cut(s)	647, 839
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	476
Eco91I	GGTNACC	1 cut(s)	863
EcoO109I	RGGNCCY	1 cut(s)	839
EcoO65I	GGTNACC	1 cut(s)	863
EcoRII	CCWGG	3 cut(s)	325, 597, 841
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	5 cut(s)	257, 365, 417, 667, 734
FaiI	YATR	9 cut(s)	255, 268, 363, 415, 485, 571, 665, 708, 732
FatI	CATG	5 cut(s)	253, 361, 413, 663, 730
FauI	CCCGC	1 cut(s)	464
Fnu4HI	GCNGC	2 cut(s)	654, 768
FokI	GGATG	2 cut(s)	260, 326
Fsp4HI	GCNGC	2 cut(s)	654, 768
FspBI	CTAG	1 cut(s)	836
GluI	GCNGC	2 cut(s)	654, 768
GsaI	CCCAGC	1 cut(s)	877
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	3 cut(s)	21, 375, 690
HapII	CCGG	1 cut(s)	657
Hin1II	CATG	5 cut(s)	257, 365, 417, 667, 734
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	2 cut(s)	499, 751
HpaI	GTTAAC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	2 cut(s)	255, 875
Hpy166II	GTNNAC	2 cut(s)	285, 647
Hpy188I	TCNGA	3 cut(s)	97, 185, 559
Hpy188III	TCNNGA	4 cut(s)	130, 503, 521, 664
Hpy8I	GTNNAC	2 cut(s)	285, 647
Hpy99I	CGWCG	2 cut(s)	629, 829
HpyAV	CCTTC	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	5 cut(s)	11, 273, 397, 703, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 767, 773, 794
HpyF3I	CTNAG	4 cut(s)	16, 182, 558, 798
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	5 cut(s)	257, 365, 417, 667, 734
KspAI	GTTAAC	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	594, 612
LmnI	GCTCC	2 cut(s)	401, 601
Lsp1109I	GCAGC	2 cut(s)	665, 779
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	836
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	741, 863
MalI	GATC	2 cut(s)	596, 614
MboI	GATC	2 cut(s)	594, 612
MboII	GAAGA	4 cut(s)	118, 153, 249, 302
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	594
MluCI	AATT	4 cut(s)	144, 191, 447, 680
MmeI	TCCRAC	1 cut(s)	785
MnlI	CCTC	6 cut(s)	179, 310, 526, 581, 748, 888
MroXI	GAANNNNTTC	2 cut(s)	498, 549
MseI	TTAA	3 cut(s)	284, 389, 641
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	4 cut(s)	327, 599, 658, 843
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	3 cut(s)	327, 599, 843
MwoI	GCNNNNNNNGC	4 cut(s)	62, 767, 773, 794
NciI	CCSGG	1 cut(s)	658
NdeII	GATC	2 cut(s)	594, 612
NlaIII	CATG	5 cut(s)	257, 365, 417, 667, 734
NlaIV	GGNNCC	2 cut(s)	596, 736
NmuCI	GTSAC	1 cut(s)	863
NspI	RCATGY	1 cut(s)	257
PagI	TCATGA	1 cut(s)	663
PctI	GAATGC	1 cut(s)	11
PdmI	GAANNNNTTC	2 cut(s)	498, 549
PfeI	GAWTC	2 cut(s)	499, 751
PflFI	GACNNNGTC	1 cut(s)	623
PflMI	CCANNNNNTGG	1 cut(s)	887
PfoI	TCCNGGA	1 cut(s)	597
PkrI	GCNGC	2 cut(s)	655, 769
PpuMI	RGGWCCY	1 cut(s)	839
Psp5II	RGGWCCY	1 cut(s)	839
Psp6I	CCWGG	3 cut(s)	325, 597, 841
PspEI	GGTNACC	1 cut(s)	863
PspFI	CCCAGC	1 cut(s)	873
PspGI	CCWGG	3 cut(s)	325, 597, 841
PspN4I	GGNNCC	2 cut(s)	596, 736
PspPI	GGNCC	2 cut(s)	647, 839
PspPPI	RGGWCCY	1 cut(s)	839
PsrI	GAACNNNNNNTAC	2 cut(s)	534, 566
PstNI	CAGNNNCTG	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	594
PsyI	GACNNNGTC	1 cut(s)	623
RsaI	GTAC	3 cut(s)	321, 609, 892
RsaNI	GTAC	3 cut(s)	320, 608, 891
SaqAI	TTAA	3 cut(s)	284, 389, 641
SatI	GCNGC	2 cut(s)	654, 768
Sau3AI	GATC	2 cut(s)	594, 612
Sau96I	GGNCC	2 cut(s)	647, 839
ScrFI	CCNGG	4 cut(s)	327, 599, 658, 843
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	647, 839
SmlI	CTYRAG	2 cut(s)	35, 521
SmoI	CTYRAG	2 cut(s)	35, 521
Sse9I	AATT	4 cut(s)	144, 191, 447, 680
SsiI	CCGC	1 cut(s)	457
SspMI	CTAG	1 cut(s)	836
StyD4I	CCNGG	4 cut(s)	325, 597, 656, 841
StyI	CCWWGG	1 cut(s)	28
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	1 cut(s)	235
TasI	AATT	4 cut(s)	144, 191, 447, 680
TatI	WGTACW	1 cut(s)	607
TfiI	GAWTC	2 cut(s)	499, 751
Tru1I	TTAA	3 cut(s)	284, 389, 641
Tru9I	TTAA	3 cut(s)	284, 389, 641
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	2 cut(s)	653, 767
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	1 cut(s)	870
TspGWI	ACGGA	2 cut(s)	270, 885
TspRI	CASTG	1 cut(s)	67
Tth111I	GACNNNGTC	1 cut(s)	623
Van91I	CCANNNNNTGG	1 cut(s)	887
VpaK11BI	GGWCC	2 cut(s)	647, 839
XceI	RCATGY	1 cut(s)	257
XmnI	GAANNNNTTC	2 cut(s)	498, 549
XspI	CTAG	1 cut(s)	836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.