Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009421

Physical Location & Seq

Genomic Coordinates Forward (+)

16233875 .. 16237617

Gene Structure 3743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00345740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGTGGGTGCATTCTCACCAAAGACAACAAAAACGAGCTCTGCTCTGTTTAACCCATCATCTGAAAGAACTTCAACTGCTCATTTCTCACTCATCAAGAAGTCAGTTGTAGATGCCAGTGGATTTTCTTCAAACCAAACTTGTTTTCTCAGAGGTCAGTTCTGTAGCAGACATTTTGTTGGGTTTTACTGCAAACCTGCTCGAAGAAAACAACCAGGGAGGCATAAGTCGTCTAGGAAATCCATATATCCCATAACATTAGCCAACAATTTTAGTGAGGTAACTGAAAATGGCTCAGATGGAAAAACACAGAGTAACGGGCATGTTGTTTCTCCAAACTGTGTTCTTCCTTTAACCGAAGCAAATGTGGAGAGAGTATTGGATGAGGTACGACCTGGTTTGATGGCAGATGGAGGGAATGTGGCACTACATGAGATAGATGGCCTTGTTGTGGTATTAAAACTACAAGGAGCTTGTGGATCATGTCCAAGCTCGACTATGACGCTAAAGATGGGAATCGAAACTCGCTTGCGTGATAAAATACCAGAGATTATGGAAGTGGAGCAGATTCTGGACACTGAGACGGGCCTTGAGCTCAATGAGGAAAATGTCGAAATGATTCCATCTTTTCAGCTTCTTGCCGAGATTAGGCCATATCTGGCTGGCACAGGAGGTGGAATTCTGGAGCTTTTAGAGATCAAAGACTACATTGTCAAAGTTCGGTTAAGTGGACCAGCAGCTGGGGTCATGACAGTTCGTGTTGCTCTAACTCAGAAGCTGAGAGAAAAAATACCTGTAATAGCAGCTGTGCAGCTGATAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0032947 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

274

Amino Acids

29.78

Weight (kDa)

8.18

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU	PF01106	123 - 188	5.5e-26	NifU-like domain
NifU	PF01106	212 - 270	9.2e-09	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25910
fragaria_vesca	FvH4_4g07770 FvH4_4g07770 FvH4_4g07770
malus_domestica	MD16G1254000.v1.1
prunus_persica	Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1 Prupe.1G081800_v2.0.a1
pyrus_communis	pycom16g21590
rosa_chinensis	RchiOBHm_Chr4g0400851
rosa_laevigata	RLG00000009172
rosa_multiflora	Rmu_sc0004401.1_g000015 Rmu_sc0018346.1_g000004
rosa_roxburghii	Rroxscaffold_5G00345740
rosa_rugosa	Rorug04G0026300 Rorug04G0026400
rosa_samantha	Rh4AG104400 Rh4BG099600 Rh4CG112800 Rh4DG096500
rosa_wichuraiana	Rw4G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	710
Acc36I	ACCTGC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	740
AclWI	GGATC	1 cut(s)	487
AcsI	RAATTY	1 cut(s)	678
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	3 cut(s)	451, 648, 740
AgsI	TTSAA	2 cut(s)	75, 132
AjnI	CCWGG	2 cut(s)	214, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
Alw21I	GWGCWC	2 cut(s)	41, 597
Alw26I	GTCTC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	487
AlwNI	CAGNNNCTG	3 cut(s)	571, 740, 778
AoxI	GGCC	3 cut(s)	442, 586, 650
ApeKI	GCWGC	3 cut(s)	737, 803, 811
ApoI	RAATTY	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	618
AspS9I	GGNCC	2 cut(s)	586, 731
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	731
BanII	GRGCYC	2 cut(s)	41, 597
Bbv12I	GWGCWC	2 cut(s)	41, 597
BbvI	GCAGC	2 cut(s)	749, 815
BccI	CCATC	7 cut(s)	64, 293, 397, 404, 434, 505, 631
BciT130I	CCWGG	2 cut(s)	216, 396
BcoDI	GTCTC	1 cut(s)	575
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	3 cut(s)	738, 804, 812
BlsI	GCNGC	3 cut(s)	739, 805, 813
Bme1390I	CCNGG	2 cut(s)	216, 396
Bme18I	GGWCC	1 cut(s)	731
BmgT120I	GGNCC	2 cut(s)	586, 731
BmrFI	CCNGG	2 cut(s)	216, 396
BmsI	GCATC	1 cut(s)	103
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BpmI	CTGGAG	1 cut(s)	704
BpuEI	CTTGAG	1 cut(s)	611
BsaBI	GATNNNNATC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	3 cut(s)	451, 648, 740
Bse1I	ACTGG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	515
BseBI	CCWGG	2 cut(s)	216, 396
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	388
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	3 cut(s)	451, 648, 740
BseMII	CTCAG	5 cut(s)	163, 309, 570, 770, 785
BseNI	ACTGG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	749, 815
BseYI	CCCAGC	1 cut(s)	740
BshFI	GGCC	3 cut(s)	444, 588, 652
BsiHKAI	GWGCWC	2 cut(s)	41, 597
BslI	CCNNNNNNNGG	3 cut(s)	451, 648, 740
BsmAI	GTCTC	1 cut(s)	575
BsmBI	CGTCTC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	444, 588, 652
Bsp1286I	GDGCHC	2 cut(s)	41, 597
Bsp143I	GATC	2 cut(s)	479, 696
BspANI	GGCC	3 cut(s)	444, 588, 652
BspCNI	CTCAG	5 cut(s)	162, 308, 571, 771, 784
BspHI	TCATGA	1 cut(s)	747
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	479, 696
Bst2UI	CCWGG	2 cut(s)	216, 396
Bst4CI	ACNGT	2 cut(s)	341, 754
BstC8I	GCNNGC	2 cut(s)	530, 664
BstDEI	CTNAG	5 cut(s)	149, 295, 579, 771, 779
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	2 cut(s)	482, 699
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	2 cut(s)	479, 696
BstNI	CCWGG	2 cut(s)	216, 396
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	214, 394
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	749, 815
BsuRI	GGCC	3 cut(s)	444, 588, 652
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	124, 576
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	530, 664
CaiI	CAGNNNCTG	3 cut(s)	571, 740, 778
CciI	TCATGA	1 cut(s)	747
Cfr13I	GGNCC	2 cut(s)	586, 731
CseI	GACGC	1 cut(s)	511
CsiI	ACCWGGT	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	4 cut(s)	323, 431, 483, 748
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	5 cut(s)	149, 295, 579, 771, 779
DpnI	GATC	2 cut(s)	481, 698
DpnII	GATC	2 cut(s)	479, 696
DrdI	GACNNNNNNGTC	1 cut(s)	710
DseDI	GACNNNNNNGTC	1 cut(s)	710
Ecl136II	GAGCTC	2 cut(s)	39, 595
Eco24I	GRGCYC	2 cut(s)	41, 597
Eco47I	GGWCC	1 cut(s)	731
Eco53kI	GAGCTC	2 cut(s)	39, 595
EcoICRI	GAGCTC	2 cut(s)	39, 595
EcoRI	GAATTC	1 cut(s)	678
EcoRII	CCWGG	2 cut(s)	214, 394
EcoT38I	GRGCYC	2 cut(s)	41, 597
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	4 cut(s)	326, 434, 486, 751
FatI	CATG	4 cut(s)	322, 430, 482, 747
Fnu4HI	GCNGC	3 cut(s)	738, 804, 812
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	2 cut(s)	41, 597
Fsp4HI	GCNGC	3 cut(s)	738, 804, 812
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	3 cut(s)	738, 804, 812
GsaI	CCCAGC	1 cut(s)	744
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	3 cut(s)	444, 588, 652
HgaI	GACGC	1 cut(s)	511
Hin1II	CATG	4 cut(s)	326, 434, 486, 751
HinfI	GANTC	3 cut(s)	516, 568, 619
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	731
Hpy188I	TCNGA	4 cut(s)	64, 152, 298, 774
Hpy188III	TCNNGA	4 cut(s)	97, 572, 683, 748
Hpy8I	GTNNAC	1 cut(s)	731
HpyCH4III	ACNGT	2 cut(s)	341, 754
HpyCH4V	TGCA	3 cut(s)	11, 192, 811
HpyF3I	CTNAG	5 cut(s)	149, 295, 579, 771, 779
Hsp92II	CATG	4 cut(s)	326, 434, 486, 751
Kzo9I	GATC	2 cut(s)	479, 696
LmnI	GCTCC	3 cut(s)	470, 562, 685
Lsp1109I	GCAGC	2 cut(s)	749, 815
LweI	GCATC	1 cut(s)	103
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	280, 314
MalI	GATC	2 cut(s)	481, 698
MboI	GATC	2 cut(s)	479, 696
MboII	GAAGA	3 cut(s)	120, 216, 338
MhlI	GDGCHC	2 cut(s)	41, 597
MluCI	AATT	2 cut(s)	268, 678
MnlI	CCTC	7 cut(s)	146, 213, 271, 379, 407, 595, 665
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	4 cut(s)	51, 353, 458, 725
MspA1I	CMGCKG	3 cut(s)	740, 806, 814
MspR9I	CCNGG	2 cut(s)	216, 396
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	2 cut(s)	216, 396
NdeII	GATC	2 cut(s)	479, 696
NlaIII	CATG	4 cut(s)	326, 434, 486, 751
NmeAIII	GCCGAG	1 cut(s)	667
NspI	RCATGY	1 cut(s)	326
PagI	TCATGA	1 cut(s)	747
PctI	GAATGC	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	3 cut(s)	516, 568, 619
PflMI	CCANNNNNTGG	1 cut(s)	740
PkrI	GCNGC	3 cut(s)	739, 805, 813
Psp124BI	GAGCTC	2 cut(s)	41, 597
Psp6I	CCWGG	2 cut(s)	214, 394
PspFI	CCCAGC	1 cut(s)	740
PspGI	CCWGG	2 cut(s)	214, 394
PspPI	GGNCC	2 cut(s)	586, 731
PstNI	CAGNNNCTG	3 cut(s)	571, 740, 778
PvuII	CAGCTG	3 cut(s)	740, 806, 814
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SacI	GAGCTC	2 cut(s)	41, 597
SaqAI	TTAA	4 cut(s)	51, 353, 458, 725
SatI	GCNGC	3 cut(s)	738, 804, 812
Sau3AI	GATC	2 cut(s)	479, 696
Sau96I	GGNCC	2 cut(s)	586, 731
ScrFI	CCNGG	2 cut(s)	216, 396
SduI	GDGCHC	2 cut(s)	41, 597
SexAI	ACCWGGT	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	2 cut(s)	268, 678
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	2 cut(s)	41, 597
StyD4I	CCNGG	2 cut(s)	214, 394
TaaI	ACNGT	2 cut(s)	341, 754
TaqI	TCGA	4 cut(s)	202, 494, 519, 612
TasI	AATT	2 cut(s)	268, 678
TfiI	GAWTC	3 cut(s)	516, 568, 619
Tru1I	TTAA	4 cut(s)	51, 353, 458, 725
Tru9I	TTAA	4 cut(s)	51, 353, 458, 725
TscAI	CASTG	2 cut(s)	124, 583
TseI	GCWGC	3 cut(s)	737, 803, 811
TspRI	CASTG	2 cut(s)	124, 583
Van91I	CCANNNNNTGG	1 cut(s)	740
VpaK11BI	GGWCC	1 cut(s)	731
XapI	RAATTY	1 cut(s)	678
XceI	RCATGY	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.