Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0018023

Physical Location & Seq

Genomic Coordinates Forward (+)

8514870 .. 8516771

Gene Structure 1902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGGATCCTCTTTGACCTGTTGCAGTTCAGAGAAGGTTGATGAAGGAGGTTTTCTAACAGGGTCGGAAAACTCTGGTACTCTGGAGGAATTAACAGTATCATCTGGATATTTATCGTTTGCTCCACATTTATCTAACAGTCTGCTTAACTGCTTGAGAATTATTAGGGCTACTGAAAGTACTGGTGGAGGTCACACAACATGGAGAATATTTTCGTACAAGGAGTTGCATACAGCTACAAATGGATTTAGCGATGACAATCTCCTTGGAGAAGGAGGTTTTGGAAGTGTGTATTGGGGAAAAACCAGTGATGGTCTTCAGATTGCTGTGAAGAAGTTGAAAGCAATGAATTCAAAAGCTGAAATGGAATTTGCAGTTGAAGTTGAAGTTCTTGGGAGGGTTCGGCACAAGAACTTGTTGGGTCTTAGGGGCTATTATGCTGGGGCAGATCAAAGGCTTATAGTCTATGATTACATGCCAAATCTCAGCTTACTTTCTCACTTGCATGGACAATTTGCGAATGAAGTTCATCTAGACTGGAAAAGGAGAATCAAAATTGCTATTGGCTCGGCGGAAGGCCTCGTGTACTTGCACCATGAGGTAACTCCACACATCATTCACAGAGACATAAAAGCAAGCAATGTGCTCTTGGATTCCGACTTCGAACCTCTAGTTGCAGATTTCGGGTTCGCCAAGCTAATCCCGGAAGGCGTAAGCCACATGACAACGCGTGTGAAGGGCACATTGGGTTACCTAGCACCGGAGTACGCTATGTGGGGAAAAGTCTCTGAAGGGTGTGATGTTTACAGCTTTGGGATTCTTCTCCTAGAGCTTGTAACCGGAAGAAAGCCTATTGAGAAGCTCCCCGGTGGAATTAAGAGAACAATCACAGAATGGGCCGAGCCGCTTATAACAAAAGGAAAGTGGAAGGAACTCTCTGATCCAAAGCTCAGAGGGAACTTCGATGAGGCTCAGTTGAAGCTTGCTATCAATGTTGCTGCTATGTGTGTGAAAAGTGAACCTGAGAAAAGGCCTAATATGATGGAAGTGGTTGATCTTTTGAAAGGGTATGAGGCTAATAAGGCCAAAATGATACCAACGAGAATTGAGAGTATTAGATACAAGGATGAGCTGGTGGCACTGGACCAAGCTACCGACGATGATGAAGATGGAGATGGTGATGAGAGTAATGGTGGATATGGTGTTTTTAGTGCTATTGAGGTCCAAAAAATGAAGGATCCTTATCAGAAGATCCATGGAGATAGGAGAATGACCAAGTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

429

Amino Acids

47.47

Weight (kDa)

5.95

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	85 - 351	7.1e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	87 - 353	1.8e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018023)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08480
malus_domestica	MD16G1264800.v1.1
prunus_persica	Prupe.1G094300_v2.0.a1
pyrus_communis	pycom16g23410
rosa_chinensis	RchiOBHm_Chr4g0403901
rosa_laevigata	RLG00000008943
rosa_multiflora	Rmu_sc0005134.1_g000012
rosa_roxburghii	Rroxscaffold_5G00348480
rosa_rugosa	Rorug04G0046100
rosa_samantha	Rh4BG114800
rosa_wichuraiana	Rw4G009900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	911
AccII	CGCG	1 cut(s)	730
AciI	CCGC	2 cut(s)	572, 905
AclWI	GGATC	5 cut(s)	13, 935, 1232, 1245, 1246
AcsI	RAATTY	2 cut(s)	349, 368
AcuI	CTGAAG	2 cut(s)	302, 810
AfaI	GTAC	5 cut(s)	79, 181, 218, 587, 767
AfiI	CCNNNNNNNGG	1 cut(s)	760
AflIII	ACRYGT	1 cut(s)	728
AgsI	TTSAA	6 cut(s)	340, 354, 380, 386, 979, 1063
AjuI	GAANNNNNNNTTGG	6 cut(s)	264, 277, 296, 309, 728, 760
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	2 cut(s)	618, 790
AlwI	GGATC	5 cut(s)	13, 935, 1232, 1245, 1246
AoxI	GGCC	4 cut(s)	577, 897, 1031, 1083
ApeKI	GCWGC	1 cut(s)	998
ApoI	RAATTY	2 cut(s)	349, 368
Asp700I	GAANNNNTTC	1 cut(s)	211
AspS9I	GGNCC	3 cut(s)	897, 1144, 1222
AsuC2I	CCSGG	2 cut(s)	704, 867
AsuHPI	GGTGA	1 cut(s)	1190
AsuII	TTCGAA	1 cut(s)	663
AvaII	GGWCC	2 cut(s)	1144, 1222
BaeGI	GKGCMC	1 cut(s)	743
BamHI	GGATCC	2 cut(s)	5, 1237
BauI	CACGAG	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	1 cut(s)	985
BccI	CCATC	4 cut(s)	305, 1036, 1163, 1169
BcnI	CCSGG	2 cut(s)	704, 867
BcoDI	GTCTC	2 cut(s)	618, 790
BfaI	CTAG	4 cut(s)	533, 671, 755, 827
BisI	GCNGC	2 cut(s)	905, 999
BlsI	GCNGC	2 cut(s)	906, 1000
BmcAI	AGTACT	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	704, 867
Bme18I	GGWCC	2 cut(s)	1144, 1222
BmgT120I	GGNCC	3 cut(s)	897, 1144, 1222
BmiI	GGNNCC	2 cut(s)	7, 1239
BmrFI	CCNGG	2 cut(s)	704, 867
BpiI	GAAGAC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	175
BpuMI	CCSGG	2 cut(s)	704, 867
BsaBI	GATNNNNATC	3 cut(s)	112, 258, 1242
BsaJI	CCNNGG	3 cut(s)	265, 865, 1255
BsaWI	WCCGGW	2 cut(s)	760, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	760
Bse1I	ACTGG	4 cut(s)	187, 306, 542, 1146
Bse3DI	GCAATG	2 cut(s)	351, 646
Bse8I	GATNNNNATC	3 cut(s)	112, 258, 1242
BseDI	CCNNGG	3 cut(s)	265, 865, 1255
BseGI	GGATG	1 cut(s)	1132
BseJI	GATNNNNATC	3 cut(s)	112, 258, 1242
BseLI	CCNNNNNNNGG	1 cut(s)	760
BseMI	GCAATG	2 cut(s)	351, 646
BseMII	CTCAG	4 cut(s)	499, 964, 986, 1014
BseNI	ACTGG	4 cut(s)	187, 306, 542, 1146
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	1 cut(s)	985
BseYI	CCCAGC	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	730
BshFI	GGCC	4 cut(s)	579, 899, 1033, 1085
BsiHKAI	GWGCWC	1 cut(s)	648
BsiSI	CCGG	4 cut(s)	704, 761, 840, 867
BslI	CCNNNNNNNGG	1 cut(s)	760
BsmAI	GTCTC	2 cut(s)	618, 790
BsnI	GGCC	4 cut(s)	579, 899, 1033, 1085
Bsp119I	TTCGAA	1 cut(s)	663
Bsp1286I	GDGCHC	2 cut(s)	648, 743
Bsp143I	GATC	6 cut(s)	5, 448, 940, 1054, 1237, 1251
Bsp19I	CCATGG	1 cut(s)	1255
BspACI	CCGC	2 cut(s)	572, 905
BspANI	GGCC	4 cut(s)	579, 899, 1033, 1085
BspCNI	CTCAG	4 cut(s)	498, 963, 985, 1015
BspFNI	CGCG	1 cut(s)	730
BspLI	GGNNCC	2 cut(s)	7, 1239
BspPI	GGATC	5 cut(s)	13, 935, 1232, 1245, 1246
BspT104I	TTCGAA	1 cut(s)	663
BsrDI	GCAATG	2 cut(s)	351, 646
BsrI	ACTGG	4 cut(s)	187, 306, 542, 1146
BssECI	CCNNGG	3 cut(s)	265, 865, 1255
BssMI	GATC	6 cut(s)	5, 448, 940, 1054, 1237, 1251
BssSI	CACGAG	1 cut(s)	581
BssT1I	CCWWGG	2 cut(s)	265, 1255
Bst2BI	CACGAG	1 cut(s)	581
Bst4CI	ACNGT	2 cut(s)	97, 140
BstBI	TTCGAA	1 cut(s)	663
BstC8I	GCNNGC	2 cut(s)	637, 984
BstDEI	CTNAG	5 cut(s)	425, 485, 950, 972, 1023
BstDSI	CCRYGG	1 cut(s)	1255
BstEII	GGTNACC	1 cut(s)	749
BstF5I	GGATG	1 cut(s)	1132
BstFNI	CGCG	1 cut(s)	730
BstKTI	GATC	6 cut(s)	8, 451, 943, 1057, 1240, 1254
BstMAI	GTCTC	2 cut(s)	618, 790
BstMBI	GATC	6 cut(s)	5, 448, 940, 1054, 1237, 1251
BstMWI	GCNNNNNNNGC	1 cut(s)	1082
BstNSI	RCATGY	1 cut(s)	478
BstPI	GGTNACC	1 cut(s)	749
BstSCI	CCNGG	2 cut(s)	702, 865
BstSLI	GKGCMC	1 cut(s)	743
BstUI	CGCG	1 cut(s)	730
BstV1I	GCAGC	1 cut(s)	985
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	3 cut(s)	5, 1237, 1251
BstYI	RGATCY	3 cut(s)	5, 1237, 1251
BsuRI	GGCC	4 cut(s)	579, 899, 1033, 1085
BtgI	CCRYGG	1 cut(s)	1255
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	1132
BtsIMutI	CAGTG	2 cut(s)	313, 1139
Cac8I	GCNNGC	2 cut(s)	637, 984
Cfr13I	GGNCC	3 cut(s)	897, 1144, 1222
Csp6I	GTAC	5 cut(s)	78, 180, 217, 586, 766
CviAII	CATG	6 cut(s)	201, 475, 506, 596, 721, 1256
CviQI	GTAC	5 cut(s)	78, 180, 217, 586, 766
DdeI	CTNAG	5 cut(s)	425, 485, 950, 972, 1023
DpnI	GATC	6 cut(s)	7, 450, 942, 1056, 1239, 1253
DpnII	GATC	6 cut(s)	5, 448, 940, 1054, 1237, 1251
EciI	GGCGGA	1 cut(s)	587
Eco130I	CCWWGG	2 cut(s)	265, 1255
Eco147I	AGGCCT	2 cut(s)	579, 1033
Eco47I	GGWCC	2 cut(s)	1144, 1222
Eco57I	CTGAAG	2 cut(s)	302, 810
Eco91I	GGTNACC	1 cut(s)	749
EcoO65I	GGTNACC	1 cut(s)	749
EcoRI	GAATTC	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	265, 1255
ErhI	CCWWGG	2 cut(s)	265, 1255
FaeI	CATG	6 cut(s)	204, 478, 509, 599, 724, 1259
FatI	CATG	6 cut(s)	200, 474, 505, 595, 720, 1255
Fnu4HI	GCNGC	2 cut(s)	905, 999
FokI	GGATG	1 cut(s)	1139
Fsp4HI	GCNGC	2 cut(s)	905, 999
FspBI	CTAG	4 cut(s)	533, 671, 755, 827
GluI	GCNGC	2 cut(s)	905, 999
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	4 cut(s)	579, 899, 1033, 1085
HapII	CCGG	4 cut(s)	704, 761, 840, 867
Hin1II	CATG	6 cut(s)	204, 478, 509, 599, 724, 1259
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	3 cut(s)	549, 653, 817
HpaII	CCGG	4 cut(s)	704, 761, 840, 867
HphI	GGTGA	1 cut(s)	1190
Hpy166II	GTNNAC	3 cut(s)	586, 805, 1019
Hpy188I	TCNGA	8 cut(s)	31, 67, 321, 658, 790, 940, 953, 1248
Hpy188III	TCNNGA	3 cut(s)	83, 105, 533
Hpy8I	GTNNAC	3 cut(s)	586, 805, 1019
Hpy99I	CGWCG	1 cut(s)	1160
HpyAV	CCTTC	9 cut(s)	28, 38, 266, 569, 701, 730, 785, 922, 1228
HpyCH4III	ACNGT	2 cut(s)	97, 140
HpyCH4V	TGCA	6 cut(s)	24, 229, 374, 505, 592, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1082
HpyF3I	CTNAG	5 cut(s)	425, 485, 950, 972, 1023
Hsp92II	CATG	6 cut(s)	204, 478, 509, 599, 724, 1259
Kzo9I	GATC	6 cut(s)	5, 448, 940, 1054, 1237, 1251
LmnI	GCTCC	2 cut(s)	127, 867
Lsp1109I	GCAGC	1 cut(s)	985
MaeI	CTAG	4 cut(s)	533, 671, 755, 827
MaeIII	GTNAC	4 cut(s)	191, 601, 749, 835
MalI	GATC	6 cut(s)	7, 450, 942, 1056, 1239, 1253
MboI	GATC	6 cut(s)	5, 448, 940, 1054, 1237, 1251
MboII	GAAGA	6 cut(s)	308, 343, 812, 855, 1178, 1261
MflI	RGATCY	3 cut(s)	5, 1237, 1251
MhlI	GDGCHC	2 cut(s)	648, 743
MluCI	AATT	8 cut(s)	89, 159, 349, 368, 512, 555, 873, 1104
MluI	ACGCGT	1 cut(s)	728
MmeI	TCCRAC	2 cut(s)	45, 681
MroXI	GAANNNNTTC	1 cut(s)	211
MseI	TTAA	3 cut(s)	92, 147, 876
MslI	CAYNNNNRTG	1 cut(s)	504
MspI	CCGG	4 cut(s)	704, 761, 840, 867
MspR9I	CCNGG	2 cut(s)	704, 867
MvnI	CGCG	1 cut(s)	730
MwoI	GCNNNNNNNGC	1 cut(s)	1082
NciI	CCSGG	2 cut(s)	704, 867
NcoI	CCATGG	1 cut(s)	1255
NdeII	GATC	6 cut(s)	5, 448, 940, 1054, 1237, 1251
NlaIII	CATG	6 cut(s)	204, 478, 509, 599, 724, 1259
NlaIV	GGNNCC	2 cut(s)	7, 1239
NmeAIII	GCCGAG	2 cut(s)	548, 925
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	663
PceI	AGGCCT	2 cut(s)	579, 1033
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	549, 653, 817
PfoI	TCCNGGA	1 cut(s)	702
PkrI	GCNGC	2 cut(s)	906, 1000
PsiI	TTATAA	1 cut(s)	911
PspEI	GGTNACC	1 cut(s)	749
PspFI	CCCAGC	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	7, 1239
PspPI	GGNCC	3 cut(s)	897, 1144, 1222
PsuI	RGATCY	3 cut(s)	5, 1237, 1251
RsaI	GTAC	5 cut(s)	79, 181, 218, 587, 767
RsaNI	GTAC	5 cut(s)	78, 180, 217, 586, 766
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	92, 147, 876
SatI	GCNGC	2 cut(s)	905, 999
Sau3AI	GATC	6 cut(s)	5, 448, 940, 1054, 1237, 1251
Sau96I	GGNCC	3 cut(s)	897, 1144, 1222
ScaI	AGTACT	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	704, 867
SduI	GDGCHC	2 cut(s)	648, 743
SfuI	TTCGAA	1 cut(s)	663
SinI	GGWCC	2 cut(s)	1144, 1222
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	8 cut(s)	89, 159, 349, 368, 512, 555, 873, 1104
SseBI	AGGCCT	2 cut(s)	579, 1033
SsiI	CCGC	2 cut(s)	572, 905
SspI	AATATT	1 cut(s)	210
SspMI	CTAG	4 cut(s)	533, 671, 755, 827
StuI	AGGCCT	2 cut(s)	579, 1033
StyD4I	CCNGG	2 cut(s)	702, 865
StyI	CCWWGG	2 cut(s)	265, 1255
TaaI	ACNGT	2 cut(s)	97, 140
TaqI	TCGA	2 cut(s)	663, 963
TasI	AATT	8 cut(s)	89, 159, 349, 368, 512, 555, 873, 1104
TatI	WGTACW	2 cut(s)	179, 585
TauI	GCSGC	1 cut(s)	907
TfiI	GAWTC	3 cut(s)	549, 653, 817
Tru1I	TTAA	3 cut(s)	92, 147, 876
Tru9I	TTAA	3 cut(s)	92, 147, 876
TscAI	CASTG	2 cut(s)	313, 1146
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	998
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	6 cut(s)	57, 362, 518, 537, 1179, 1247
TspRI	CASTG	2 cut(s)	313, 1146
VpaK11BI	GGWCC	2 cut(s)	1144, 1222
XapI	RAATTY	2 cut(s)	349, 368
XbaI	TCTAGA	1 cut(s)	532
XceI	RCATGY	1 cut(s)	478
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	4 cut(s)	533, 671, 755, 827
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.