pycom16g23410
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0018023
Physical Location & Seq
Forward (+)
24366141 .. 24368248
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g23410.2

Sequence Viewer

Length: 1176 bp
ATGGGATCATCCGTGAGTGCTTGCTGTAGTTCAGAGAAGGTAGACGAAGAAAGGGCTACTCGGGAAGTTGGTGAAGCAGGTCACACATCATGGAGAATATTTTCGTATAAGGAGTTGCATACAGCTACTAATGGGTTTAGTGATGACAATTTGCTTGGAGAGGGAGGGTTTGGAAGTGTTTATTGGGGAAAGACCAGTGATGGTCTACAGATTGCTGTGAAGAAGTTGAAAGCAATGAATTCAAAAGCTGAAATGGAATTTGCAGTTGAGGTTGAAGTTCTTGGAAGGGTTAGGCACAAGAATTTGTTGGGACTTAGGGGCTATTATGCTGGGGCAGATCAACGCCTTATTGTCTATGATTACATGCCAAATCTTAGTTTACTTTCTCACTTGCATGGCCAATTTGCAAGTGAAGTTCGGCTGGATTGGAAAAGGAGAATGAAAGTTGCTATTGGCTCAGCAGAAGGCCTCCTGTACTTACACCATGAGGTGACACCCCACATCATTCATAGAGATATAAAGGCTAGCAATGTGCTGTTGGATTCAGATTTCGAACCACTAGTTGCAGACTTTGGGTTTGCCAAGCTAATCCCCGAAGGTGTGAGCCACATGACTACTCGAGTCAAGGGAACTTTGGGTTACCTAGCACCTGAATATGCCATGTGGGGAAAAGTCTCAGAGAGCTGTGATGTTTATAGTTTTGGGATTCTTCTTTTAGAGCTCGTAACTGGAAGAAAGCCCATAGAAAAACTCCCTGGCGGAGTTAAGAGGACGATCACTGAGTGGGCAGAGCCACTTATAACCAAAGGCAGACTTAAGGAACTTGCAGACCCAAGACTCAGAGGAAACTTTGATGAAGGCCAACTGAAGCAAGCTATCAATGTTGCTGCACTTTGTGTGAAAAGTGACCCTGAGAAAAGGCTCAAGATTAAGGAAGTGGTAGATCTTTTAAAAGGGTATGAGGCTCAAATCAAGATGAAACCATTGAGAATTGAAAGTGTGAGATACAAGGAGGAGCTTCTGGCCCTCGACCAAGCTACCGATGATGATGAAGATGGAGGGCCGGACGAAAGTACTAACGGGTATGGAGTTTTCAGTGCTATAGAGGTGCAGAAAATGCAGGATCCTTACAAGGAAAGAGAACGGCGAAATATGTGTGAGAGAGTATTAATTTGA

Protein Analysis

392

Amino Acids

43.83

Weight (kDa)

6.12

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018023)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08480
malus_domestica MD16G1264800.v1.1
prunus_persica Prupe.1G094300_v2.0.a1
pyrus_communis pycom16g23410
rosa_chinensis RchiOBHm_Chr4g0403901
rosa_laevigata RLG00000008943
rosa_multiflora Rmu_sc0005134.1_g000012
rosa_roxburghii Rroxscaffold_5G00348480
rosa_rugosa Rorug04G0046100
rosa_samantha Rh4BG114800
rosa_wichuraiana Rw4G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 800
Acc36I ACCTGC 1 cut(s) 68
AccI GTMKAC 2 cut(s) 42, 205
AciI CCGC 1 cut(s) 759
AclWI GGATC 3 cut(s) 13, 1118, 1131
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 3 cut(s) 238, 257, 301
AcuI CTGAAG 1 cut(s) 887
AdeI CACNNNGTG 2 cut(s) 783, 896
AfaI GTAC 2 cut(s) 476, 1075
AflII CTTAAG 1 cut(s) 815
AgsI TTSAA 4 cut(s) 229, 243, 275, 995
AhlI ACTAGT 1 cut(s) 559
AjnI CCWGG 1 cut(s) 754
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 8 cut(s) 125, 248, 586, 684, 721, 875, 1018, 1037
AluI AGCT 8 cut(s) 125, 248, 586, 684, 721, 875, 1018, 1037
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 3 cut(s) 13, 1118, 1131
Ama87I CYCGRG 2 cut(s) 60, 618
AoxI GGCC 5 cut(s) 397, 466, 859, 1023, 1061
ApeKI GCWGC 1 cut(s) 887
ApoI RAATTY 3 cut(s) 238, 257, 301
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
AseI ATTAAT 1 cut(s) 1169
Asp700I GAANNNNTTC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 1024, 1061
AsuHPI GGTGA 2 cut(s) 83, 502
AsuII TTCGAA 1 cut(s) 552
AsuNHI GCTAGC 1 cut(s) 524
AvaI CYCGRG 2 cut(s) 60, 618
BalI TGGCCA 1 cut(s) 399
BamHI GGATCC 1 cut(s) 1123
BanII GRGCYC 1 cut(s) 723
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 1 cut(s) 874
BccI CCATC 2 cut(s) 194, 1049
BceAI ACGGC 1 cut(s) 1160
BciT130I CCWGG 1 cut(s) 756
BcoDI GTCTC 1 cut(s) 679
BcuI ACTAGT 1 cut(s) 559
BfaI CTAG 3 cut(s) 525, 560, 644
BfmI CTRYAG 3 cut(s) 25, 206, 1101
BfrI CTTAAG 1 cut(s) 815
BfuAI ACCTGC 1 cut(s) 68
BglII AGATCT 1 cut(s) 943
BisI GCNGC 1 cut(s) 888
BlpI GCTNAGC 1 cut(s) 457
BlsI GCNGC 1 cut(s) 889
BmcAI AGTACT 1 cut(s) 1075
Bme1390I CCNGG 1 cut(s) 756
BmeT110I CYCGRG 2 cut(s) 60, 618
BmgT120I GGNCC 2 cut(s) 1024, 1061
BmiI GGNNCC 1 cut(s) 1125
BmrFI CCNGG 1 cut(s) 756
BmtI GCTAGC 1 cut(s) 528
Bpu1102I GCTNAGC 1 cut(s) 457
Bpu14I TTCGAA 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 908
BsaJI CCNNGG 1 cut(s) 754
Bse1I ACTGG 2 cut(s) 195, 733
Bse3DI GCAATG 2 cut(s) 240, 535
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 754
BseGI GGATG 1 cut(s) 8
BseMI GCAATG 2 cut(s) 240, 535
BseMII CTCAG 5 cut(s) 471, 690, 771, 853, 903
BseNI ACTGG 2 cut(s) 195, 733
BseRI GAGGAG 1 cut(s) 1028
BseXI GCAGC 1 cut(s) 874
BseYI CCCAGC 1 cut(s) 329
BsgI GTGCAG 2 cut(s) 873, 1130
BshFI GGCC 5 cut(s) 399, 468, 861, 1025, 1063
BsiHKAI GWGCWC 1 cut(s) 723
BsiHKCI CYCGRG 2 cut(s) 60, 618
BsiSI CCGG 1 cut(s) 1064
BslFI GGGAC 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 679
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 5 cut(s) 399, 468, 861, 1025, 1063
BsoBI CYCGRG 2 cut(s) 60, 618
Bsp119I TTCGAA 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 5 cut(s) 5, 337, 774, 943, 1123
Bsp1720I GCTNAGC 1 cut(s) 457
BspACI CCGC 1 cut(s) 759
BspANI GGCC 5 cut(s) 399, 468, 861, 1025, 1063
BspCNI CTCAG 5 cut(s) 470, 689, 772, 852, 904
BspLI GGNNCC 1 cut(s) 1125
BspMI ACCTGC 1 cut(s) 68
BspOI GCTAGC 1 cut(s) 528
BspPI GGATC 3 cut(s) 13, 1118, 1131
BspT104I TTCGAA 1 cut(s) 552
BspTI CTTAAG 1 cut(s) 815
BsrDI GCAATG 2 cut(s) 240, 535
BsrI ACTGG 2 cut(s) 195, 733
BssECI CCNNGG 1 cut(s) 754
BssMI GATC 5 cut(s) 5, 337, 774, 943, 1123
Bst2UI CCWGG 1 cut(s) 756
BstAFI CTTAAG 1 cut(s) 815
BstAPI GCANNNNNTGC 1 cut(s) 1117
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 3 cut(s) 22, 526, 873
BstDEI CTNAG 7 cut(s) 314, 374, 457, 676, 780, 839, 912
BstEII GGTNACC 1 cut(s) 638
BstF5I GGATG 1 cut(s) 8
BstKTI GATC 5 cut(s) 8, 340, 777, 946, 1126
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 5 cut(s) 5, 337, 774, 943, 1123
BstMWI GCNNNNNNNGC 1 cut(s) 1117
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 1 cut(s) 367
BstPI GGTNACC 1 cut(s) 638
BstSCI CCNGG 1 cut(s) 754
BstSFI CTRYAG 3 cut(s) 25, 206, 1101
BstV1I GCAGC 1 cut(s) 874
BstX2I RGATCY 2 cut(s) 943, 1123
BstYI RGATCY 2 cut(s) 943, 1123
BsuRI GGCC 5 cut(s) 399, 468, 861, 1025, 1063
BtsCI GGATG 1 cut(s) 8
BtsIMutI CAGTG 3 cut(s) 202, 777, 1102
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 3 cut(s) 22, 526, 873
Cfr13I GGNCC 2 cut(s) 1024, 1061
Csp6I GTAC 2 cut(s) 475, 1074
CviAII CATG 6 cut(s) 90, 364, 395, 485, 610, 661
CviQI GTAC 2 cut(s) 475, 1074
DdeI CTNAG 7 cut(s) 314, 374, 457, 676, 780, 839, 912
DpnI GATC 5 cut(s) 7, 339, 776, 945, 1125
DpnII GATC 5 cut(s) 5, 337, 774, 943, 1123
DraI TTTAAA 1 cut(s) 951
DraIII CACNNNGTG 2 cut(s) 783, 896
EaeI YGGCCR 1 cut(s) 397
EciI GGCGGA 1 cut(s) 774
Ecl136II GAGCTC 1 cut(s) 721
Eco147I AGGCCT 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 723
Eco53kI GAGCTC 1 cut(s) 721
Eco57I CTGAAG 1 cut(s) 887
Eco88I CYCGRG 2 cut(s) 60, 618
Eco91I GGTNACC 1 cut(s) 638
EcoICRI GAGCTC 1 cut(s) 721
EcoO65I GGTNACC 1 cut(s) 638
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 754
EcoT38I GRGCYC 1 cut(s) 723
FaeI CATG 6 cut(s) 93, 367, 398, 488, 613, 664
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 1 cut(s) 324
FatI CATG 6 cut(s) 89, 363, 394, 484, 609, 660
FblI GTMKAC 2 cut(s) 42, 205
Fnu4HI GCNGC 1 cut(s) 888
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 1 cut(s) 888
FspBI CTAG 3 cut(s) 525, 560, 644
GluI GCNGC 1 cut(s) 888
GsaI CCCAGC 1 cut(s) 333
HaeIII GGCC 5 cut(s) 399, 468, 861, 1025, 1063
HapII CCGG 1 cut(s) 1064
Hin1II CATG 6 cut(s) 93, 367, 398, 488, 613, 664
HinfI GANTC 4 cut(s) 542, 621, 706, 837
HpaII CCGG 1 cut(s) 1064
HphI GGTGA 2 cut(s) 83, 502
Hpy166II GTNNAC 3 cut(s) 43, 206, 380
Hpy188I TCNGA 4 cut(s) 34, 547, 679, 842
Hpy188III TCNNGA 3 cut(s) 62, 925, 973
Hpy8I GTNNAC 3 cut(s) 43, 206, 380
HpyAV CCTTC 5 cut(s) 31, 279, 458, 590, 851
HpyCH4V TGCA 9 cut(s) 118, 263, 394, 407, 566, 827, 890, 1111, 1120
HpyF10VI GCNNNNNNNGC 1 cut(s) 1117
HpyF3I CTNAG 7 cut(s) 314, 374, 457, 676, 780, 839, 912
Hsp92II CATG 6 cut(s) 93, 367, 398, 488, 613, 664
Kzo9I GATC 5 cut(s) 5, 337, 774, 943, 1123
LmnI GCTCC 1 cut(s) 1015
Lsp1109I GCAGC 1 cut(s) 874
MaeI CTAG 3 cut(s) 525, 560, 644
MaeIII GTNAC 5 cut(s) 80, 490, 638, 724, 905
MalI GATC 5 cut(s) 7, 339, 776, 945, 1125
MboI GATC 5 cut(s) 5, 337, 774, 943, 1123
MboII GAAGA 5 cut(s) 59, 232, 701, 744, 1064
MflI RGATCY 2 cut(s) 943, 1123
MhlI GDGCHC 1 cut(s) 723
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 7 cut(s) 148, 238, 257, 301, 401, 990, 1170
MluNI TGGCCA 1 cut(s) 399
MlyI GAGTC 2 cut(s) 630, 831
MmeI TCCRAC 1 cut(s) 519
Mox20I TGGCCA 1 cut(s) 399
MroXI GAANNNNTTC 1 cut(s) 100
MscI TGGCCA 1 cut(s) 399
MseI TTAA 5 cut(s) 765, 816, 930, 950, 1169
MslI CAYNNNNRTG 1 cut(s) 393
Msp20I TGGCCA 1 cut(s) 399
MspCI CTTAAG 1 cut(s) 815
MspI CCGG 1 cut(s) 1064
MspR9I CCNGG 1 cut(s) 756
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 1 cut(s) 1117
NdeII GATC 5 cut(s) 5, 337, 774, 943, 1123
NheI GCTAGC 1 cut(s) 524
NlaIII CATG 6 cut(s) 93, 367, 398, 488, 613, 664
NlaIV GGNNCC 1 cut(s) 1125
NmuCI GTSAC 3 cut(s) 80, 490, 905
NspI RCATGY 1 cut(s) 367
NspV TTCGAA 1 cut(s) 552
PaeR7I CTCGAG 1 cut(s) 618
PceI AGGCCT 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 2 cut(s) 542, 706
PkrI GCNGC 1 cut(s) 889
PleI GAGTC 2 cut(s) 629, 831
PpsI GAGTC 2 cut(s) 629, 831
PshBI ATTAAT 1 cut(s) 1169
PsiI TTATAA 1 cut(s) 800
Psp124BI GAGCTC 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 754
PspEI GGTNACC 1 cut(s) 638
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 1 cut(s) 1125
PspPI GGNCC 2 cut(s) 1024, 1061
PspXI VCTCGAGB 1 cut(s) 618
PsuI RGATCY 2 cut(s) 943, 1123
RsaI GTAC 2 cut(s) 476, 1075
RsaNI GTAC 2 cut(s) 475, 1074
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 723
SaqAI TTAA 5 cut(s) 765, 816, 930, 950, 1169
SatI GCNGC 1 cut(s) 888
Sau3AI GATC 5 cut(s) 5, 337, 774, 943, 1123
Sau96I GGNCC 2 cut(s) 1024, 1061
ScaI AGTACT 1 cut(s) 1075
SchI GAGTC 2 cut(s) 630, 831
ScrFI CCNGG 1 cut(s) 756
SduI GDGCHC 1 cut(s) 723
SfcI CTRYAG 3 cut(s) 25, 206, 1101
Sfr274I CTCGAG 1 cut(s) 618
SfuI TTCGAA 1 cut(s) 552
SlaI CTCGAG 1 cut(s) 618
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 3 cut(s) 618, 815, 923
SmoI CTYRAG 3 cut(s) 618, 815, 923
SpeI ACTAGT 1 cut(s) 559
Sse9I AATT 7 cut(s) 148, 238, 257, 301, 401, 990, 1170
SseBI AGGCCT 1 cut(s) 468
SsiI CCGC 1 cut(s) 759
SspI AATATT 1 cut(s) 99
SspMI CTAG 3 cut(s) 525, 560, 644
SstI GAGCTC 1 cut(s) 723
StuI AGGCCT 1 cut(s) 468
StyD4I CCNGG 1 cut(s) 754
TaqI TCGA 3 cut(s) 552, 619, 1029
TasI AATT 7 cut(s) 148, 238, 257, 301, 401, 990, 1170
TatI WGTACW 2 cut(s) 474, 1073
TfiI GAWTC 2 cut(s) 542, 706
Tru1I TTAA 5 cut(s) 765, 816, 930, 950, 1169
Tru9I TTAA 5 cut(s) 765, 816, 930, 950, 1169
TscAI CASTG 3 cut(s) 202, 784, 1102
TseFI GTSAC 3 cut(s) 80, 490, 905
TseI GCWGC 1 cut(s) 887
Tsp45I GTSAC 3 cut(s) 80, 490, 905
TspDTI ATGAA 6 cut(s) 251, 455, 497, 870, 992, 1065
TspRI CASTG 3 cut(s) 202, 784, 1102
Vha464I CTTAAG 1 cut(s) 815
VspI ATTAAT 1 cut(s) 1169
XapI RAATTY 3 cut(s) 238, 257, 301
XceI RCATGY 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 618
XmiI GTMKAC 2 cut(s) 42, 205
XmnI GAANNNNTTC 1 cut(s) 100
XspI CTAG 3 cut(s) 525, 560, 644
ZrmI AGTACT 1 cut(s) 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.