Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007925

Physical Location & Seq

Genomic Coordinates Forward (+)

7171197 .. 7173727

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0046100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAGGATTTTCCTGGGACTCCTGGGACTTTAACTGGGCTTCTTCTCAGGATTCTACAATGCGTCTTTGCTGCTGCCTCTATTGCTTCCATGGCCACCACCTCCAGCTTCTTCAATTTCACAGCTTTCTGCTACCTGATTGCTTCAATGGGTCTGCAAGTGATTTGGAGTTTTGTTCTGGCATTGTTAGATGCATATTCCTTGATGAAAAAGAAGGCCCTCCACAACCCTGTATTGGTCAGCCTCTTTGTAGTTGGAGACTGGGTTACAGCAACACTGTCTCTTGCAGCTGCTTCTGCTTCAGCTGGAATAACTGTCCTATACTTTAGTGACCTGAGCCACTGCAGTTTCGGAGAGGAATGCCAAAAATACCAGATGGCAGTTGCTTTTGCTTACCTGAGTTGGGTAACAATTGCCATTTCTTCTCTAATCATGCTCTGGCTATTGGCAGCAGTGTCAATAGTCAATAGTCAATACTCAATAGAAAAGGAAACAAACTGGATAACAGTACAATACTCAAGAAATTACTCTCATTACCTTGTCTTTTGTTTGGATGGAGTGGGATTAGAATTGGGAAATGGTTGTATCAACAACGGAAACATATGTGTACTTGCAGACTTGAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Usp

Protein Analysis

209

Amino Acids

22.77

Weight (kDa)

5.44

Isoelectric Point (pI)

23.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	7 - 136	1.9e-27	Casparian strip membrane protein domain
MARVEL	PF01284	14 - 141	4.1e-06	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57670
fragaria_vesca	FvH4_4g08510 FvH4_4g08510 FvH4_4g08510 FvH4_4g08510
malus_domestica	MD13G1263500.v1.1 MD16G1264900.v1.1
prunus_persica	Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1
pyrus_communis	pycom16g23440
rosa_chinensis	RchiOBHm_Chr4g0403851 RchiOBHm_Chr4g0403861
rosa_laevigata	RLG00000008945
rosa_multiflora	Rmu_sc0005134.1_g000014
rosa_roxburghii	Rroxscaffold_5G00348470
rosa_rugosa	Rorug04G0046100 Rorug04G0046100
rosa_samantha	Rh4AG121300 Rh4BG114600 Rh4CG129900 Rh4DG114600
rosa_wichuraiana	Rw4G009890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	2 cut(s)	510, 609
AfiI	CCNNNNNNNGG	2 cut(s)	235, 403
AgsI	TTSAA	3 cut(s)	115, 147, 622
AjnI	CCWGG	2 cut(s)	13, 22
AluBI	AGCT	4 cut(s)	108, 125, 290, 305
AluI	AGCT	4 cut(s)	108, 125, 290, 305
Alw26I	GTCTC	2 cut(s)	252, 285
AoxI	GGCC	2 cut(s)	93, 216
ApeKI	GCWGC	5 cut(s)	71, 74, 287, 290, 449
AspS9I	GGNCC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	95
BbvI	GCAGC	5 cut(s)	58, 61, 277, 299, 461
BccI	CCATC	2 cut(s)	370, 548
BciT130I	CCWGG	2 cut(s)	15, 24
BcoDI	GTCTC	2 cut(s)	252, 285
BfmI	CTRYAG	1 cut(s)	343
BisI	GCNGC	5 cut(s)	72, 75, 288, 291, 450
BlsI	GCNGC	5 cut(s)	73, 76, 289, 292, 451
Bme1390I	CCNGG	2 cut(s)	15, 24
BmgT120I	GGNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	15, 24
BmrI	ACTGGG	2 cut(s)	45, 271
BmsI	GCATC	1 cut(s)	181
BmuI	ACTGGG	2 cut(s)	45, 271
BpmI	CTGGAG	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	502
BsaJI	CCNNGG	3 cut(s)	14, 23, 90
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 403
Bse1I	ACTGG	3 cut(s)	40, 266, 503
BseBI	CCWGG	2 cut(s)	15, 24
BseDI	CCNNGG	3 cut(s)	14, 23, 90
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	2 cut(s)	235, 403
BseMII	CTCAG	3 cut(s)	61, 326, 389
BseNI	ACTGG	3 cut(s)	40, 266, 503
BseXI	GCAGC	5 cut(s)	58, 61, 277, 299, 461
BshFI	GGCC	2 cut(s)	95, 218
BslFI	GGGAC	2 cut(s)	31, 40
BslI	CCNNNNNNNGG	2 cut(s)	235, 403
BsmAI	GTCTC	2 cut(s)	252, 285
BsmFI	GGGAC	2 cut(s)	31, 40
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	95, 218
Bsp19I	CCATGG	1 cut(s)	90
BspANI	GGCC	2 cut(s)	95, 218
BspCNI	CTCAG	3 cut(s)	60, 327, 390
BspMAI	CTGCAG	1 cut(s)	347
BsrI	ACTGG	3 cut(s)	40, 266, 503
BssECI	CCNNGG	3 cut(s)	14, 23, 90
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	15, 24
Bst4CI	ACNGT	3 cut(s)	279, 316, 508
BstDEI	CTNAG	3 cut(s)	47, 335, 398
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	559
BstMAI	GTCTC	2 cut(s)	252, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 92, 296
BstNI	CCWGG	2 cut(s)	15, 24
BstSCI	CCNGG	2 cut(s)	13, 22
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	5 cut(s)	58, 61, 277, 299, 461
BsuRI	GGCC	2 cut(s)	95, 218
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	2 cut(s)	340, 459
BtsIMutI	CAGTG	3 cut(s)	275, 340, 459
Cfr13I	GGNCC	1 cut(s)	217
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	509, 608
CviAII	CATG	2 cut(s)	91, 433
CviQI	GTAC	2 cut(s)	509, 608
DdeI	CTNAG	3 cut(s)	47, 335, 398
EaeI	YGGCCR	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	13, 22
EcoT14I	CCWWGG	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	94, 436
FaiI	YATR	6 cut(s)	92, 196, 322, 434, 602, 604
FaqI	GGGAC	2 cut(s)	31, 40
FatI	CATG	2 cut(s)	90, 432
FauNDI	CATATG	1 cut(s)	602
Fnu4HI	GCNGC	5 cut(s)	72, 75, 288, 291, 450
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	5 cut(s)	72, 75, 288, 291, 450
GluI	GCNGC	5 cut(s)	72, 75, 288, 291, 450
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	95, 218
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	94, 436
HinfI	GANTC	2 cut(s)	19, 52
Hpy166II	GTNNAC	1 cut(s)	608
Hpy188I	TCNGA	1 cut(s)	353
Hpy188III	TCNNGA	2 cut(s)	49, 519
Hpy8I	GTNNAC	1 cut(s)	608
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	3 cut(s)	279, 316, 508
HpyCH4V	TGCA	5 cut(s)	157, 194, 287, 345, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 92, 296
HpyF3I	CTNAG	3 cut(s)	47, 335, 398
Hsp92II	CATG	2 cut(s)	94, 436
Lsp1109I	GCAGC	5 cut(s)	58, 61, 277, 299, 461
LweI	GCATC	1 cut(s)	181
MaeIII	GTNAC	3 cut(s)	265, 329, 406
MboII	GAAGA	3 cut(s)	35, 103, 414
MfeI	CAATTG	1 cut(s)	411
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	5 cut(s)	115, 411, 523, 569, 622
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	5 cut(s)	88, 112, 230, 254, 349
Mox20I	TGGCCA	1 cut(s)	95
Mph1103I	ATGCAT	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	1 cut(s)	32
Msp20I	TGGCCA	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	290, 305
MspR9I	CCNGG	2 cut(s)	15, 24
MunI	CAATTG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	2 cut(s)	15, 24
MwoI	GCNNNNNNNGC	3 cut(s)	83, 92, 296
NcoI	CCATGG	1 cut(s)	90
NdeI	CATATG	1 cut(s)	602
NlaIII	CATG	2 cut(s)	94, 436
NmuCI	GTSAC	1 cut(s)	329
NsiI	ATGCAT	1 cut(s)	196
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	5 cut(s)	73, 76, 289, 292, 451
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	13, 22
PspGI	CCWGG	2 cut(s)	13, 22
PspPI	GGNCC	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	347
PvuII	CAGCTG	2 cut(s)	290, 305
RsaI	GTAC	2 cut(s)	510, 609
RsaNI	GTAC	2 cut(s)	509, 608
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	5 cut(s)	72, 75, 288, 291, 450
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	15, 24
SetI	ASST	9 cut(s)	104, 110, 127, 138, 292, 307, 336, 399, 540
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	5 cut(s)	115, 411, 523, 569, 622
StyD4I	CCNGG	2 cut(s)	13, 22
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	3 cut(s)	279, 316, 508
TasI	AATT	5 cut(s)	115, 411, 523, 569, 622
TatI	WGTACW	2 cut(s)	508, 607
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	3 cut(s)	282, 347, 459
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	5 cut(s)	71, 74, 287, 290, 449
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	17, 221
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	3 cut(s)	282, 347, 459
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.