Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007925

Physical Location & Seq

Genomic Coordinates Reverse (-)

19399356 .. 19403199

Gene Structure 3844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG114600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGCCTTCGGTCCCTGCTAAGATACTCATAGGCATCTCTTCAGACCCAGATGAAAGCAAACAGTTGCTATCACGAGCAATTAGTGTTCTGGCTCATCCGAATGACAACATTGTTGCCATTCATGTTCTTGTTGGCGAGGAGAGGAAGAAGCGTGAATCAGTAACAAAGTCTCAATCCCAACTTCGTAGAGCAAAAGCCTATGTTATATCTGTGCTTGGAGAATTTGCCAGGACTTGCCAATCCAAGCAGGTAAACCTGGAGGCAAAAGTAATTTTCTGCTCTAGTATTGGAAGAGGTCTAGTTGAGGAAGCAAAATCTATTTTCGCAGATTATCTTCTTCTTTGTAGCTCAAGAAACCAATCAAACAGAGTTCCATCCATTACAAGATACTGCTTAAAACATGCCCCGTCTGGTTGCACATTGGTTTTATTGGGGAAACCTACCAACCCTCAACAAAAGTCAGATTCACATTCTGCAGACTCGAAAGAAAGCCATCAATCAATTCCATGGCGGACTAAAAATACCATTCCGAGTGACAGAAGTACATCCTCTTCTGAAAATCTAGGTGTCAAAGAAACGAAGAAAGAAATCACTTCACCAAGGGCTGTTTTAGATGAATTTGAAGTAGAATCTCAGAGCACAGATGATACTGGTAGCTATGGGGACTCGGCTATCATACAGTCCCCCTCTCTGGCTGCCAAGATCATGAGCCAAACCAACACAAAGAAGCAAGGATTATCACCATGCAGATTCATCACTTCTTTCTTTGGTTCACCATTCAGAAAAACAAATGGCAGTTTATCAAACAACGAAAAGCGATTACCTTCACTGAAGTGCTTCAGCTACAAGGAGATCATGAATTCTACAAACAGCTTCCACCCAGATAATCTGGTAGGTCGAGGTGGGTATTCTGAAGTATATAGGGGTAATCTTTCTGATGGGCAAACCATTGCTGTCAAAATGTTGGCCAAGGACAACAACAATGCTAACAAGGAAAAAGAGTTCCTAATGGAACTGGGAGTAATTTTACATGTCAGCCATCCTAATACAGCCAAATTAGTTGGTTGCTGCATTGAAAATGGACTTTACCTCATTTTCAACTTCACTGAAAACGGAACTTTGGCATCTGCATTACATGGTAAATCGTGTGAATCACTTCCGTGGCCTATTAGATACAAAATTGTCATTGGAGTTGCAAAGGGTCTGCATTATCTGCATAAATGTTGTAAGCACCGGATAATACATCGTGACATAAAAGCCTCAAATGTCCTTCTTGGGCCAGATTATGAACCACAGATTACAGATTTTGGACTAGCAAAATGGCTTCCTAACAAATGGACTCACCACGCTGTGATTCCGATAGAGGGTACATTTGGATACTTAGCACCAGAGTACTTCATGCATGGAATTGTGGATGAAAAAACAGATGTTTTTGCATTTGGGGTTCTTCTTTTGGAGATAGTAACTGGCCGAAAGCCTGTCGATTCATCTACAAAAAACCTTCTACTTTGGGTAAGGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Usp

Protein Analysis

508

Amino Acids

56.25

Weight (kDa)

9.16

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	7 - 141	6.6e-06	Universal stress protein family
Pkinase	PF00069	293 - 499	2.7e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	296 - 499	7.8e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57670
fragaria_vesca	FvH4_4g08510 FvH4_4g08510 FvH4_4g08510 FvH4_4g08510
malus_domestica	MD13G1263500.v1.1 MD16G1264900.v1.1
prunus_persica	Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1
pyrus_communis	pycom16g23440
rosa_chinensis	RchiOBHm_Chr4g0403851 RchiOBHm_Chr4g0403861
rosa_laevigata	RLG00000008945
rosa_multiflora	Rmu_sc0005134.1_g000014
rosa_roxburghii	Rroxscaffold_5G00348470
rosa_rugosa	Rorug04G0046100 Rorug04G0046100
rosa_samantha	Rh4AG121300 Rh4BG114600 Rh4CG129900 Rh4DG114600
rosa_wichuraiana	Rw4G009890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AciI	CCGC	1 cut(s)	511
AcoI	YGGCCR	2 cut(s)	966, 1468
AcsI	RAATTY	3 cut(s)	221, 617, 859
AcuI	CTGAAG	4 cut(s)	24, 823, 851, 933
AdeI	CACNNNGTG	1 cut(s)	1351
AfaI	GTAC	3 cut(s)	544, 1369, 1394
AfiI	CCNNNNNNNGG	2 cut(s)	691, 1364
AflIII	ACRYGT	1 cut(s)	1030
AgsI	TTSAA	3 cut(s)	623, 1076, 1099
AjnI	CCWGG	2 cut(s)	227, 255
AleI	CACNNNNGTG	2 cut(s)	832, 1159
AloI	GAACNNNNNNTCC	2 cut(s)	986, 1018
AluBI	AGCT	4 cut(s)	348, 657, 843, 873
AluI	AGCT	4 cut(s)	348, 657, 843, 873
Alw21I	GWGCWC	1 cut(s)	641
Alw26I	GTCTC	1 cut(s)	174
AoxI	GGCC	4 cut(s)	966, 1163, 1277, 1468
ApeKI	GCWGC	2 cut(s)	695, 1068
ApoI	RAATTY	3 cut(s)	221, 617, 859
Asp700I	GAANNNNTTC	2 cut(s)	836, 1155
AspS9I	GGNCC	2 cut(s)	10, 1277
AsuHPI	GGTGA	4 cut(s)	588, 732, 765, 1334
AvaII	GGWCC	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	968
BarI	GAAGNNNNNNTAC	2 cut(s)	535, 567
BauI	CACGAG	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	641
BbvI	GCAGC	2 cut(s)	682, 1055
BccI	CCATC	4 cut(s)	382, 501, 932, 1047
BciT130I	CCWGG	2 cut(s)	229, 257
BciVI	GTATCC	1 cut(s)	1370
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	4 cut(s)	282, 299, 563, 1313
BfmI	CTRYAG	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	1370
BisI	GCNGC	2 cut(s)	696, 1069
BlsI	GCNGC	2 cut(s)	697, 1070
BmcAI	AGTACT	1 cut(s)	1394
Bme1390I	CCNGG	2 cut(s)	229, 257
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	10, 1277
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	229, 257
BmrI	ACTGGG	1 cut(s)	1025
BmsI	GCATC	2 cut(s)	42, 1133
BmuI	ACTGGG	1 cut(s)	1025
BpmI	CTGGAG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	334
BsaJI	CCNNGG	4 cut(s)	506, 599, 969, 1160
BsaWI	WCCGGW	1 cut(s)	1233
Bsc4I	CCNNNNNNNGG	2 cut(s)	691, 1364
Bse1I	ACTGG	3 cut(s)	655, 1020, 1471
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	2 cut(s)	229, 257
BseDI	CCNNGG	4 cut(s)	506, 599, 969, 1160
BseGI	GGATG	5 cut(s)	94, 374, 545, 1039, 1420
BseLI	CCNNNNNNNGG	2 cut(s)	691, 1364
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	1 cut(s)	647
BseNI	ACTGG	3 cut(s)	655, 1020, 1471
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	682, 1055
BshFI	GGCC	4 cut(s)	968, 1165, 1279, 1470
BsiHKAI	GWGCWC	1 cut(s)	641
BsiSI	CCGG	1 cut(s)	1234
BslFI	GGGAC	2 cut(s)	667, 677
BslI	CCNNNNNNNGG	2 cut(s)	691, 1364
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	2 cut(s)	667, 677
BsnI	GGCC	4 cut(s)	968, 1165, 1279, 1470
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp143I	GATC	2 cut(s)	702, 852
Bsp19I	CCATGG	1 cut(s)	506
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	4 cut(s)	968, 1165, 1279, 1470
BspCNI	CTCAG	1 cut(s)	646
BspHI	TCATGA	2 cut(s)	705, 855
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	478
BspMI	ACCTGC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	948
BsrI	ACTGG	3 cut(s)	655, 1020, 1471
BssECI	CCNNGG	4 cut(s)	506, 599, 969, 1160
BssMI	GATC	2 cut(s)	702, 852
BssSI	CACGAG	1 cut(s)	72
BssT1I	CCWWGG	3 cut(s)	506, 599, 969
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	229, 257
Bst4CI	ACNGT	2 cut(s)	63, 681
Bst6I	CTCTTC	3 cut(s)	43, 286, 556
BstAPI	GCANNNNNTGC	1 cut(s)	1213
BstDEI	CTNAG	3 cut(s)	18, 633, 1381
BstDSI	CCRYGG	2 cut(s)	506, 1160
BstF5I	GGATG	5 cut(s)	94, 374, 545, 1039, 1420
BstKTI	GATC	2 cut(s)	705, 855
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	702, 852
BstMWI	GCNNNNNNNGC	1 cut(s)	1213
BstNI	CCWGG	2 cut(s)	229, 257
BstNSI	RCATGY	2 cut(s)	404, 1034
BstSCI	CCNGG	2 cut(s)	227, 255
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	682, 1055
BsuI	GTATCC	1 cut(s)	1370
BsuRI	GGCC	4 cut(s)	968, 1165, 1279, 1470
BtgI	CCRYGG	2 cut(s)	506, 1160
BtsCI	GGATG	5 cut(s)	94, 374, 545, 1039, 1420
BtsIMutI	CAGTG	2 cut(s)	827, 1104
BveI	ACCTGC	1 cut(s)	238
CciI	TCATGA	2 cut(s)	705, 855
Cfr13I	GGNCC	2 cut(s)	10, 1277
Csp6I	GTAC	3 cut(s)	543, 1368, 1393
CviQI	GTAC	3 cut(s)	543, 1368, 1393
DdeI	CTNAG	3 cut(s)	18, 633, 1381
DpnI	GATC	2 cut(s)	704, 854
DpnII	GATC	2 cut(s)	702, 852
DraIII	CACNNNGTG	1 cut(s)	1351
EaeI	YGGCCR	2 cut(s)	966, 1468
Eam1104I	CTCTTC	3 cut(s)	43, 286, 556
EarI	CTCTTC	3 cut(s)	43, 286, 556
EciI	GGCGGA	1 cut(s)	526
Eco130I	CCWWGG	3 cut(s)	506, 599, 969
Eco47I	GGWCC	1 cut(s)	10
Eco57I	CTGAAG	4 cut(s)	24, 823, 851, 933
EcoRI	GAATTC	1 cut(s)	859
EcoRII	CCWGG	2 cut(s)	227, 255
EcoT14I	CCWWGG	3 cut(s)	506, 599, 969
EcoT22I	ATGCAT	1 cut(s)	1404
ErhI	CCWWGG	3 cut(s)	506, 599, 969
FaqI	GGGAC	2 cut(s)	667, 677
Fnu4HI	GCNGC	2 cut(s)	696, 1069
FokI	GGATG	5 cut(s)	81, 361, 532, 1026, 1427
Fsp4HI	GCNGC	2 cut(s)	696, 1069
FspBI	CTAG	4 cut(s)	282, 299, 563, 1313
GluI	GCNGC	2 cut(s)	696, 1069
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	4 cut(s)	968, 1165, 1279, 1470
HapII	CCGG	1 cut(s)	1234
HpaII	CCGG	1 cut(s)	1234
HphI	GGTGA	4 cut(s)	588, 732, 765, 1334
Hpy166II	GTNNAC	2 cut(s)	253, 773
Hpy188III	TCNNGA	5 cut(s)	72, 351, 706, 856, 1247
Hpy8I	GTNNAC	2 cut(s)	253, 773
HpyAV	CCTTC	4 cut(s)	15, 834, 1280, 1511
HpyCH4III	ACNGT	2 cut(s)	63, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1213
HpyF3I	CTNAG	3 cut(s)	18, 633, 1381
Kzo9I	GATC	2 cut(s)	702, 852
Lsp1109I	GCAGC	2 cut(s)	682, 1055
LweI	GCATC	2 cut(s)	42, 1133
MaeI	CTAG	4 cut(s)	282, 299, 563, 1313
MaeIII	GTNAC	4 cut(s)	160, 533, 1247, 1462
MalI	GATC	2 cut(s)	704, 854
MboI	GATC	2 cut(s)	702, 852
MboII	GAAGA	8 cut(s)	30, 157, 303, 326, 329, 543, 592, 1439
MhlI	GDGCHC	1 cut(s)	641
MlsI	TGGCCA	1 cut(s)	968
MluNI	TGGCCA	1 cut(s)	968
MlyI	GAGTC	3 cut(s)	473, 659, 1333
Mox20I	TGGCCA	1 cut(s)	968
Mph1103I	ATGCAT	1 cut(s)	1404
MroXI	GAANNNNTTC	2 cut(s)	836, 1155
MscI	TGGCCA	1 cut(s)	968
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	3 cut(s)	99, 832, 1159
Msp20I	TGGCCA	1 cut(s)	968
MspI	CCGG	1 cut(s)	1234
MspR9I	CCNGG	2 cut(s)	229, 257
MvaI	CCWGG	2 cut(s)	229, 257
MwoI	GCNNNNNNNGC	1 cut(s)	1213
NcoI	CCATGG	1 cut(s)	506
NdeII	GATC	2 cut(s)	702, 852
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	1 cut(s)	647
NmuCI	GTSAC	2 cut(s)	533, 1247
NsiI	ATGCAT	1 cut(s)	1404
NspI	RCATGY	2 cut(s)	404, 1034
OliI	CACNNNNGTG	2 cut(s)	832, 1159
PagI	TCATGA	2 cut(s)	705, 855
PciI	ACATGT	1 cut(s)	1030
PdmI	GAANNNNTTC	2 cut(s)	836, 1155
PfeI	GAWTC	7 cut(s)	155, 464, 629, 750, 1151, 1354, 1484
PkrI	GCNGC	2 cut(s)	697, 1070
PleI	GAGTC	3 cut(s)	473, 659, 1333
PpsI	GAGTC	3 cut(s)	473, 659, 1333
PscI	ACATGT	1 cut(s)	1030
Psp6I	CCWGG	2 cut(s)	227, 255
PspGI	CCWGG	2 cut(s)	227, 255
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	2 cut(s)	10, 1277
PstI	CTGCAG	1 cut(s)	478
RsaI	GTAC	3 cut(s)	544, 1369, 1394
RsaNI	GTAC	3 cut(s)	543, 1368, 1393
RseI	CAYNNNNRTG	3 cut(s)	99, 832, 1159
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	2 cut(s)	696, 1069
Sau3AI	GATC	2 cut(s)	702, 852
Sau96I	GGNCC	2 cut(s)	10, 1277
ScaI	AGTACT	1 cut(s)	1394
SchI	GAGTC	3 cut(s)	473, 659, 1333
ScrFI	CCNGG	2 cut(s)	229, 257
SduI	GDGCHC	1 cut(s)	641
SfaNI	GCATC	2 cut(s)	42, 1133
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	3 cut(s)	99, 832, 1159
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
SsiI	CCGC	1 cut(s)	511
SspMI	CTAG	4 cut(s)	282, 299, 563, 1313
StyD4I	CCNGG	2 cut(s)	227, 255
StyI	CCWWGG	3 cut(s)	506, 599, 969
TaaI	ACNGT	2 cut(s)	63, 681
TaqI	TCGA	3 cut(s)	482, 898, 1482
TatI	WGTACW	2 cut(s)	542, 1392
TfiI	GAWTC	7 cut(s)	155, 464, 629, 750, 1151, 1354, 1484
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	2 cut(s)	834, 1111
TseFI	GTSAC	2 cut(s)	533, 1247
TseI	GCWGC	2 cut(s)	695, 1068
Tsp45I	GTSAC	2 cut(s)	533, 1247
TspDTI	ATGAA	9 cut(s)	66, 110, 630, 742, 872, 1302, 1387, 1431, 1476
TspGWI	ACGGA	2 cut(s)	1128, 1149
TspRI	CASTG	2 cut(s)	834, 1111
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	3 cut(s)	221, 617, 859
XceI	RCATGY	2 cut(s)	404, 1034
XmnI	GAANNNNTTC	2 cut(s)	836, 1155
XspI	CTAG	4 cut(s)	282, 299, 563, 1313
ZrmI	AGTACT	1 cut(s)	1394
Zsp2I	ATGCAT	1 cut(s)	1404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.