Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007925

Physical Location & Seq

Genomic Coordinates Forward (+)

33595081 .. 33598034

Gene Structure 2954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1264900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGACAAACAGAATGCGGCCTTCAGCCCCGTCTAAAATACTCGTAGGCATATCTTCCGATGCAACTGACAGCCAGGAATTGCTCTCATGGCCCATCAGAGTTCTTGCTCTTCCAAATGACAACATTGTTGCCATCCATGTTCTTGTTGGCGAGGAGAGGAAAAAGCACGAATTAGCAACAAAAAATCAATCGCAGCTTCGTCGAGCAAAAGCCAATGTTATATCTGTGCTTGGAGAATTTGCCAGGAGTTGCCAATCCAAGCAGGTAAATTTAGAGGCAAGAGTGGTTTTTAGCTCAAGTGTTGGAAGAGGTCTGATTGAGGAAGCAAAATCACTTTCAGCTGACTATCTTCTTCTTGGTGGCTCAAGAAGCCAATCCAAAAGAACTCCATCCATCACAAAATATTGCTTCAAGCATGCCCCGGCTAATTGCACACTGGTTTTACTTGGGAAATTAAGGCAACCACAACAAAATTCAGATTCAAAATCTGCAAAAACTAAAGAAATCCTTCAATCAAGTTCAAGAACGTCGTTGCAAGATATCATGCACTGTAGCAGAACTACATCCTTTTCTGAAAAGCAAACTGTCCAAGAAACACGGAACAAAAACGCTTCACCAAGAACTGTTTTACATGAATTTGAAGCTGAATCTCAGAGCACAGAAGATGATACCTGTAGCTATGCAGACTCGACCATTACGGCATCCCCCTCTCTTGCTACTCTCAATTTCAAAAGCCAAGCCAACCTAAGAAAGCAACGATTGTCACCTTGCAGAATCATCACTTCATTTTTAGGTTCACCATTCAGAAAACGAAATGGAAGTTTATCCAAGAACGAACTGCAGCTACCTTCATTGAGGTGCTTCAGCTACAAGGAGATCATGAATTCCACAAACAACTTCCAGCCAGATAATATAGTAGGTCGAGGTGGGTATTCAGAAGTATATAAGGGCGATCTTTCTGATGGAAGACGCATTGCGGTTAAGATGTTGGCCAAGGACAGCAAGGATGCTAACAAGGAAAAAGAGTTCCTCATGGAATTGGGTGTAATTTTACATGTCAGCCATCCTAATACTGCTAACTTAGTTGGTTGCTGCATTGAAAACGGACTCTACCTGATTTTCGATTTCTCTCCAAAAGGAAATTTGTCATCTGCTTTGCATGGTAAATCCTGTGAGTCGCTTTCGTGGCCTATTAGATACAAGATTGCCATTGGAGTTGCAAGGGGTCTGCACTATCTACATAAATGTTGCAAGCATCGAATAATCCATCGGGACATAAAAGCCTCAAATGTCCTTCTGGGACCAGATTATGAGCCGAAGATTACAGATTTCGGACTGGCAAAGTGGCTTCCTAACAAATGGACTCACCATGCTGTGCTTCCAATTGAGGGTACATTTGGGTACTTAGCACCAGAGTACTTCATGAACGGAATTGTGGATGAAAAAATTGATGTTTTTGCATTTGGGGTTCTTCTTATGGAAATTGTAACTGGAAGAAAGCCTGTGGATTCATCAAAACTAAACCTTCTCGTATGGGCAAAGCCTCTTATGGAATCAGGGGACATAGCCAAACTAGCTGATCCAAAACTGGAAGGAAAATATGATGCAGAACAACTGCAGAGAGTAGTGCTTACAGCTTCCAATTGTGTGAGACAATCCTCAGTATGGCGTCCGGCGATGAGTGAGGTGTTAGAGCTTCTAACCAATGGCCACCACTCTGAAGTTGCAAGGAGCTGGATTCCTAAGTTTTCATCGGACGAGTTGGATGATTATTCGATGGTTTATGGATATGAAGTTCCAGTAGATATTGATTTGGAGAAATACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Usp

Protein Analysis

610

Amino Acids

67.96

Weight (kDa)

8.99

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	12 - 147	2.2e-06	Universal stress protein family
Pkinase	PF00069	302 - 509	7.6e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	304 - 565	1.1e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57670
fragaria_vesca	FvH4_4g08510 FvH4_4g08510 FvH4_4g08510 FvH4_4g08510
malus_domestica	MD13G1263500.v1.1 MD16G1264900.v1.1
prunus_persica	Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1
pyrus_communis	pycom16g23440
rosa_chinensis	RchiOBHm_Chr4g0403851 RchiOBHm_Chr4g0403861
rosa_laevigata	RLG00000008945
rosa_multiflora	Rmu_sc0005134.1_g000014
rosa_roxburghii	Rroxscaffold_5G00348470
rosa_rugosa	Rorug04G0046100 Rorug04G0046100
rosa_samantha	Rh4AG121300 Rh4BG114600 Rh4CG129900 Rh4DG114600
rosa_wichuraiana	Rw4G009890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	253
AciI	CCGC	2 cut(s)	16, 977
AclWI	GGATC	1 cut(s)	1574
AcoI	YGGCCR	2 cut(s)	990, 1708
AcsI	RAATTY	6 cut(s)	236, 268, 472, 635, 883, 1141
AcuI	CTGAAG	3 cut(s)	6, 847, 1740
AcyI	GRCGYC	1 cut(s)	1669
AfaI	GTAC	3 cut(s)	1393, 1403, 1418
AfiI	CCNNNNNNNGG	2 cut(s)	1388, 1665
AflIII	ACRYGT	1 cut(s)	1054
AgsI	TTSAA	7 cut(s)	412, 483, 512, 522, 641, 730, 1100
AjnI	CCWGG	2 cut(s)	72, 242
AloI	GAACNNNNNNTCC	4 cut(s)	1010, 1042, 1779, 1811
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	1 cut(s)	1645
AlwI	GGATC	1 cut(s)	1574
AoxI	GGCC	5 cut(s)	17, 89, 990, 1187, 1708
ApeKI	GCWGC	3 cut(s)	193, 841, 1092
ApoI	RAATTY	6 cut(s)	236, 268, 472, 635, 883, 1141
Asp700I	GAANNNNTTC	1 cut(s)	507
AspS9I	GGNCC	2 cut(s)	90, 1301
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	4 cut(s)	606, 756, 789, 1358
AvaII	GGWCC	1 cut(s)	1301
BalI	TGGCCA	2 cut(s)	992, 1710
BbsI	GAAGAC	1 cut(s)	973
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	3 cut(s)	205, 853, 1079
BccI	CCATC	8 cut(s)	101, 140, 397, 401, 956, 1071, 1275, 1771
BceAI	ACGGC	1 cut(s)	714
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	2 cut(s)	74, 244
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	1645
BfaI	CTAG	1 cut(s)	1574
BfmI	CTRYAG	4 cut(s)	550, 673, 839, 1616
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	4 cut(s)	17, 194, 842, 1093
BlsI	GCNGC	4 cut(s)	18, 195, 843, 1094
BmcAI	AGTACT	1 cut(s)	1418
Bme1390I	CCNGG	3 cut(s)	74, 244, 422
Bme18I	GGWCC	1 cut(s)	1301
BmgT120I	GGNCC	2 cut(s)	90, 1301
BmiI	GGNNCC	1 cut(s)	1302
BmrFI	CCNGG	3 cut(s)	74, 244, 422
BmsI	GCATC	5 cut(s)	49, 710, 997, 1264, 1594
BpiI	GAAGAC	1 cut(s)	973
BpuEI	CTTGAG	2 cut(s)	280, 349
BpuMI	CCSGG	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	1669
BsaJI	CCNNGG	2 cut(s)	420, 993
Bsc4I	CCNNNNNNNGG	2 cut(s)	1388, 1665
Bse1I	ACTGG	5 cut(s)	441, 1341, 1495, 1593, 1799
Bse3DI	GCAATG	1 cut(s)	972
BseBI	CCWGG	2 cut(s)	74, 244
BseDI	CCNNGG	2 cut(s)	420, 993
BseGI	GGATG	8 cut(s)	132, 389, 563, 701, 1012, 1063, 1444, 1771
BseLI	CCNNNNNNNGG	2 cut(s)	1388, 1665
BseMI	GCAATG	1 cut(s)	972
BseMII	CTCAG	2 cut(s)	665, 1674
BseNI	ACTGG	5 cut(s)	441, 1341, 1495, 1593, 1799
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	3 cut(s)	205, 853, 1079
BsgI	GTGCAG	1 cut(s)	1214
BshFI	GGCC	5 cut(s)	19, 91, 992, 1189, 1710
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	422, 1673
BslFI	GGGAC	3 cut(s)	1286, 1314, 1574
BslI	CCNNNNNNNGG	2 cut(s)	1388, 1665
BsmAI	GTCTC	1 cut(s)	1645
BsmFI	GGGAC	3 cut(s)	1286, 1314, 1574
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	5 cut(s)	19, 91, 992, 1189, 1710
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	876, 952, 1579
BspACI	CCGC	2 cut(s)	16, 977
BspANI	GGCC	5 cut(s)	19, 91, 992, 1189, 1710
BspCNI	CTCAG	2 cut(s)	664, 1673
BspHI	TCATGA	2 cut(s)	879, 1422
BspLI	GGNNCC	1 cut(s)	1302
BspMAI	CTGCAG	2 cut(s)	843, 1620
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	1574
BspQI	GCTCTTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	972
BsrI	ACTGG	5 cut(s)	441, 1341, 1495, 1593, 1799
BssECI	CCNNGG	2 cut(s)	420, 993
BssMI	GATC	3 cut(s)	876, 952, 1579
BssNI	GRCGYC	1 cut(s)	1669
BssT1I	CCWWGG	1 cut(s)	993
Bst2UI	CCWGG	2 cut(s)	74, 244
Bst4CI	ACNGT	3 cut(s)	551, 586, 625
Bst6I	CTCTTC	2 cut(s)	114, 301
BstACI	GRCGYC	1 cut(s)	1669
BstC8I	GCNNGC	2 cut(s)	417, 1253
BstDEI	CTNAG	6 cut(s)	651, 746, 1081, 1405, 1660, 1743
BstF5I	GGATG	8 cut(s)	132, 389, 563, 701, 1012, 1063, 1444, 1771
BstKTI	GATC	3 cut(s)	879, 955, 1582
BstMAI	GTCTC	1 cut(s)	1645
BstMBI	GATC	3 cut(s)	876, 952, 1579
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 369, 1186, 1574
BstNI	CCWGG	2 cut(s)	74, 244
BstNSI	RCATGY	2 cut(s)	419, 1058
BstSCI	CCNGG	3 cut(s)	72, 242, 420
BstSFI	CTRYAG	4 cut(s)	550, 673, 839, 1616
BstV1I	GCAGC	3 cut(s)	205, 853, 1079
BstV2I	GAAGAC	1 cut(s)	973
BsuRI	GGCC	5 cut(s)	19, 91, 992, 1189, 1710
BtgZI	GCGATG	1 cut(s)	1691
BtsCI	GGATG	8 cut(s)	132, 389, 563, 701, 1012, 1063, 1444, 1771
BtsIMutI	CAGTG	2 cut(s)	434, 547
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	417, 1253
CciI	TCATGA	2 cut(s)	879, 1422
Cfr13I	GGNCC	2 cut(s)	90, 1301
CseI	GACGC	2 cut(s)	978, 1658
Csp6I	GTAC	3 cut(s)	1392, 1402, 1417
CviQI	GTAC	3 cut(s)	1392, 1402, 1417
DdeI	CTNAG	6 cut(s)	651, 746, 1081, 1405, 1660, 1743
DpnI	GATC	3 cut(s)	878, 954, 1581
DpnII	GATC	3 cut(s)	876, 952, 1579
EaeI	YGGCCR	2 cut(s)	990, 1708
Eam1104I	CTCTTC	2 cut(s)	114, 301
EarI	CTCTTC	2 cut(s)	114, 301
Eco130I	CCWWGG	1 cut(s)	993
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	1301
Eco57I	CTGAAG	3 cut(s)	6, 847, 1740
EcoRI	GAATTC	1 cut(s)	883
EcoRII	CCWGG	2 cut(s)	72, 242
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	993
ErhI	CCWWGG	1 cut(s)	993
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FaqI	GGGAC	3 cut(s)	1286, 1314, 1574
Fnu4HI	GCNGC	4 cut(s)	17, 194, 842, 1093
FokI	GGATG	8 cut(s)	119, 376, 550, 688, 1019, 1050, 1451, 1778
Fsp4HI	GCNGC	4 cut(s)	17, 194, 842, 1093
FspBI	CTAG	1 cut(s)	1574
GluI	GCNGC	4 cut(s)	17, 194, 842, 1093
HaeIII	GGCC	5 cut(s)	19, 91, 992, 1189, 1710
HapII	CCGG	2 cut(s)	422, 1673
HgaI	GACGC	2 cut(s)	978, 1658
Hin1I	GRCGYC	1 cut(s)	1669
HpaII	CCGG	2 cut(s)	422, 1673
HphI	GGTGA	4 cut(s)	606, 756, 789, 1358
Hpy166II	GTNNAC	1 cut(s)	797
Hpy188III	TCNNGA	5 cut(s)	366, 522, 880, 1271, 1423
Hpy8I	GTNNAC	1 cut(s)	797
Hpy99I	CGWCG	2 cut(s)	204, 532
HpyAV	CCTTC	6 cut(s)	30, 518, 858, 1304, 1535, 1586
HpyCH4III	ACNGT	3 cut(s)	551, 586, 625
HpyCH4IV	ACGT	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 369, 1186, 1574
HpyF3I	CTNAG	6 cut(s)	651, 746, 1081, 1405, 1660, 1743
HpySE526I	ACGT	1 cut(s)	527
Hsp92I	GRCGYC	1 cut(s)	1669
Kzo9I	GATC	3 cut(s)	876, 952, 1579
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	1731
Lsp1109I	GCAGC	3 cut(s)	205, 853, 1079
LweI	GCATC	5 cut(s)	49, 710, 997, 1264, 1594
MaeI	CTAG	1 cut(s)	1574
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	2 cut(s)	762, 1486
MalI	GATC	3 cut(s)	878, 954, 1581
MboI	GATC	3 cut(s)	876, 952, 1579
MfeI	CAATTG	2 cut(s)	1383, 1642
MhlI	GDGCHC	1 cut(s)	659
MlsI	TGGCCA	2 cut(s)	992, 1710
MluNI	TGGCCA	2 cut(s)	992, 1710
MlyI	GAGTC	4 cut(s)	680, 1101, 1184, 1357
MmeI	TCCRAC	2 cut(s)	283, 1743
Mox20I	TGGCCA	2 cut(s)	992, 1710
MroXI	GAANNNNTTC	1 cut(s)	507
MscI	TGGCCA	2 cut(s)	992, 1710
MseI	TTAA	2 cut(s)	455, 981
MslI	CAYNNNNRTG	1 cut(s)	856
Msp20I	TGGCCA	2 cut(s)	992, 1710
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	422, 1673
MspR9I	CCNGG	3 cut(s)	74, 244, 422
MunI	CAATTG	2 cut(s)	1383, 1642
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	2 cut(s)	74, 244
MwoI	GCNNNNNNNGC	4 cut(s)	88, 369, 1186, 1574
NciI	CCSGG	1 cut(s)	422
NdeII	GATC	3 cut(s)	876, 952, 1579
NlaIV	GGNNCC	1 cut(s)	1302
NmuCI	GTSAC	1 cut(s)	762
NspI	RCATGY	2 cut(s)	419, 1058
PaeI	GCATGC	1 cut(s)	419
PagI	TCATGA	2 cut(s)	879, 1422
PciI	ACATGT	1 cut(s)	1054
PciSI	GCTCTTC	1 cut(s)	114
PctI	GAATGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	6 cut(s)	479, 647, 774, 1508, 1553, 1738
PkrI	GCNGC	4 cut(s)	18, 195, 843, 1094
PleI	GAGTC	4 cut(s)	680, 1101, 1183, 1357
PpsI	GAGTC	4 cut(s)	680, 1101, 1183, 1357
PscI	ACATGT	1 cut(s)	1054
Psp6I	CCWGG	2 cut(s)	72, 242
PspGI	CCWGG	2 cut(s)	72, 242
PspN4I	GGNNCC	1 cut(s)	1302
PspPI	GGNCC	2 cut(s)	90, 1301
PsrI	GAACNNNNNNTAC	2 cut(s)	828, 860
PstI	CTGCAG	2 cut(s)	843, 1620
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	3 cut(s)	1393, 1403, 1418
RsaNI	GTAC	3 cut(s)	1392, 1402, 1417
RseI	CAYNNNNRTG	1 cut(s)	856
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	455, 981
SatI	GCNGC	4 cut(s)	17, 194, 842, 1093
Sau3AI	GATC	3 cut(s)	876, 952, 1579
Sau96I	GGNCC	2 cut(s)	90, 1301
ScaI	AGTACT	1 cut(s)	1418
SchI	GAGTC	4 cut(s)	680, 1101, 1184, 1357
ScrFI	CCNGG	3 cut(s)	74, 244, 422
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	5 cut(s)	49, 710, 997, 1264, 1594
SfcI	CTRYAG	4 cut(s)	550, 673, 839, 1616
SinI	GGWCC	1 cut(s)	1301
SmiMI	CAYNNNNRTG	1 cut(s)	856
SmlI	CTYRAG	2 cut(s)	295, 364
SmoI	CTYRAG	2 cut(s)	295, 364
SphI	GCATGC	1 cut(s)	419
SsiI	CCGC	2 cut(s)	16, 977
SspI	AATATT	1 cut(s)	404
SspMI	CTAG	1 cut(s)	1574
StyD4I	CCNGG	3 cut(s)	72, 242, 420
StyI	CCWWGG	1 cut(s)	993
TaaI	ACNGT	3 cut(s)	551, 586, 625
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	6 cut(s)	202, 689, 922, 1122, 1258, 1775
TatI	WGTACW	1 cut(s)	1416
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	6 cut(s)	479, 647, 774, 1508, 1553, 1738
Tru1I	TTAA	2 cut(s)	455, 981
Tru9I	TTAA	2 cut(s)	455, 981
TscAI	CASTG	2 cut(s)	441, 554
TseFI	GTSAC	1 cut(s)	762
TseI	GCWGC	3 cut(s)	193, 841, 1092
Tsp45I	GTSAC	1 cut(s)	762
TspGWI	ACGGA	3 cut(s)	613, 1119, 1443
TspRI	CASTG	2 cut(s)	441, 554
VpaK11BI	GGWCC	1 cut(s)	1301
XapI	RAATTY	6 cut(s)	236, 268, 472, 635, 883, 1141
XceI	RCATGY	2 cut(s)	419, 1058
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	1 cut(s)	1574
ZrmI	AGTACT	1 cut(s)	1418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.