Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005134.1

Orthogroup ID

OG0007925

Physical Location & Seq

Genomic Coordinates Forward (+)

101532 .. 104968

Gene Structure 3437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005134.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

atgccttcagtcccttctaagatactcataggcatctcttctgacccagatgaaagcaaacagttgctatcacgagcaattagtgttctggctcatccgaatgacaacattgttgccattcatgttcttgttggcgaggagaggaagaagcgcgaatcagtaacaaagtctcaatcccaacttcgtagagcaaaagcctatgttatatctgtgcttggagaatttgccaggacttgccaatccaagcaggtcaacctggaggcaaaagtaattttctgctctagtattggaagaggtctagttgaggaagcaaaatctattttcgcagattatcttcttctttgtagctcaagaaaccaatcaaacagagttccatccattacaagatactgcttaaaacatgccccgtctggttgcacattgattttattggggaaacctaccaaccctcaacaaaagtcagatccacattctgcagactcgaaagaaagccatcaatcaattccatggaggactaaaaataccattccgagtggcagaagtacatcctcttctgaaaatctaggtgtcaaagaaacgaagaaagaaatcacttcaccaagggctgttttagatgaatttgaagtagaatctcagagcacagatgatactggtagctatggggactcggctatcatacagtccccctctctggctgccaagatcatgagccaaaccaacacaaagaagcaaggattatcaccatgcagattcatcacttctttctttggttcaccattcagaaaaacaaatggcagtttgtcaaacaacgaaaagcgattaccttcactgaagtgcttcagttacaaggagatcatgaattctacaaacagctttcacccagataatctggtaggtcgaggtgggtattctgaagtatataggggtaatctttctgatgggcaaaccattgcagtcaaaatgttggccaaggacaacaacaatgctaacaaggaaaaagagttcctaatggaactgggagtaattttacatgtcagccatcctaatacagccaaattagttggttgctgcattgaaaatggactttacctcattttcaacttcactgaaaacggaactttggcatctgcattacatggtaaatcatgtgaatcacttccgtggcctattagatacaaaattgtcattggagttgcaaagggtctgcattatctgcataaatgttgtaagcaccggataatacatcgtgacataaaagcctcaaatgtccttcttgggccagattatgaaccacagattacagattttggactagcaaaatggcttcctaacaaatggactcaccacgctgtgattccgatagagggtacatttggatacttagcaccagagtacttcatgcatggaattgtggatgaaaaaacagatgtttttgcatttggggttcttcttttggagatagtaactggccgaaagcctgtcgattcatctacaaaaaaccttctactttgggcaatgccacacatggaatcaggggacatagctaaactagctgatccaaaactggaagcaaattatgatgcagaacaactgcagagagtagtccttgctgcctcatattgtgtgagacaaacgtcggtatggcgtccatcgatgagtgaggtgttagagcttctaaacaaaggccataagtctgagattgcaaggacctcgattccaaagttttcctcagatgagttggatgattactccatggtttttggttatgatattccagaagacattgatttggaggactatttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Usp

Protein Analysis

601

Amino Acids

66.71

Weight (kDa)

8.26

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57670
fragaria_vesca	FvH4_4g08510 FvH4_4g08510 FvH4_4g08510 FvH4_4g08510
malus_domestica	MD13G1263500.v1.1 MD16G1264900.v1.1
prunus_persica	Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1
pyrus_communis	pycom16g23440
rosa_chinensis	RchiOBHm_Chr4g0403851 RchiOBHm_Chr4g0403861
rosa_laevigata	RLG00000008945
rosa_multiflora	Rmu_sc0005134.1_g000014
rosa_roxburghii	Rroxscaffold_5G00348470
rosa_rugosa	Rorug04G0046100 Rorug04G0046100
rosa_samantha	Rh4AG121300 Rh4BG114600 Rh4CG129900 Rh4DG114600
rosa_wichuraiana	Rw4G009890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	2 cut(s)	458, 1550
AcoI	YGGCCR	2 cut(s)	966, 1468
AcsI	RAATTY	3 cut(s)	221, 617, 859
AcuI	CTGAAG	3 cut(s)	823, 851, 933
AcyI	GRCGYC	1 cut(s)	1645
AdeI	CACNNNGTG	1 cut(s)	1351
AfaI	GTAC	3 cut(s)	544, 1369, 1394
AfiI	CCNNNNNNNGG	2 cut(s)	691, 1364
AflIII	ACRYGT	1 cut(s)	1030
AgsI	TTSAA	3 cut(s)	623, 1076, 1099
AjnI	CCWGG	2 cut(s)	227, 255
AleI	CACNNNNGTG	2 cut(s)	832, 1159
AloI	GAACNNNNNNTCC	2 cut(s)	986, 1018
AluBI	AGCT	6 cut(s)	348, 657, 873, 1544, 1553, 1672
AluI	AGCT	6 cut(s)	348, 657, 873, 1544, 1553, 1672
Alw21I	GWGCWC	1 cut(s)	641
Alw26I	GTCTC	2 cut(s)	174, 1621
AlwI	GGATC	2 cut(s)	458, 1550
AoxI	GGCC	5 cut(s)	966, 1163, 1277, 1468, 1684
ApeKI	GCWGC	3 cut(s)	695, 1068, 1610
ApoI	RAATTY	3 cut(s)	221, 617, 859
Asp700I	GAANNNNTTC	2 cut(s)	836, 1155
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	1277, 1707
AsuHPI	GGTGA	5 cut(s)	588, 732, 765, 869, 1334
AvaII	GGWCC	1 cut(s)	1707
BalI	TGGCCA	1 cut(s)	968
BarI	GAAGNNNNNNTAC	2 cut(s)	535, 567
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	1785
Bbv12I	GWGCWC	1 cut(s)	641
BbvI	GCAGC	3 cut(s)	682, 1055, 1597
BccI	CCATC	5 cut(s)	382, 501, 932, 1047, 1657
BcgI	CGANNNNNNTGC	2 cut(s)	1692, 1726
BciT130I	CCWGG	2 cut(s)	229, 257
BciVI	GTATCC	1 cut(s)	1370
BcoDI	GTCTC	2 cut(s)	174, 1621
BfaI	CTAG	5 cut(s)	282, 299, 563, 1313, 1550
BfmI	CTRYAG	2 cut(s)	474, 1592
BfuAI	ACCTGC	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	1370
BisI	GCNGC	3 cut(s)	696, 1069, 1611
BlsI	GCNGC	3 cut(s)	697, 1070, 1612
BmcAI	AGTACT	1 cut(s)	1394
Bme1390I	CCNGG	2 cut(s)	229, 257
Bme18I	GGWCC	1 cut(s)	1707
BmgT120I	GGNCC	2 cut(s)	1277, 1707
BmrFI	CCNGG	2 cut(s)	229, 257
BmrI	ACTGGG	1 cut(s)	1025
BmsI	GCATC	3 cut(s)	42, 1133, 1570
BmuI	ACTGGG	1 cut(s)	1025
BoxI	GACNNNNGTC	1 cut(s)	1633
BpiI	GAAGAC	1 cut(s)	1785
BpmI	CTGGAG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	334
Bsa29I	ATCGAT	1 cut(s)	1652
BsaHI	GRCGYC	1 cut(s)	1645
BsaJI	CCNNGG	5 cut(s)	506, 599, 969, 1160, 1752
BsaWI	WCCGGW	1 cut(s)	1233
Bsc4I	CCNNNNNNNGG	2 cut(s)	691, 1364
Bse1I	ACTGG	4 cut(s)	655, 1020, 1471, 1569
Bse3DI	GCAATG	2 cut(s)	948, 1521
BseBI	CCWGG	2 cut(s)	229, 257
BseCI	ATCGAT	1 cut(s)	1652
BseDI	CCNNGG	5 cut(s)	506, 599, 969, 1160, 1752
BseGI	GGATG	6 cut(s)	94, 374, 545, 1039, 1420, 1747
BseLI	CCNNNNNNNGG	2 cut(s)	691, 1364
BseMI	GCAATG	2 cut(s)	948, 1521
BseMII	CTCAG	3 cut(s)	647, 1686, 1743
BseNI	ACTGG	4 cut(s)	655, 1020, 1471, 1569
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	682, 1055, 1597
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	5 cut(s)	968, 1165, 1279, 1470, 1686
BshVI	ATCGAT	1 cut(s)	1652
BsiHKAI	GWGCWC	1 cut(s)	641
BsiSI	CCGG	1 cut(s)	1234
BslFI	GGGAC	3 cut(s)	667, 677, 1550
BslI	CCNNNNNNNGG	2 cut(s)	691, 1364
BsmAI	GTCTC	2 cut(s)	174, 1621
BsmFI	GGGAC	3 cut(s)	667, 677, 1550
BsnI	GGCC	5 cut(s)	968, 1165, 1279, 1470, 1686
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp143I	GATC	4 cut(s)	463, 702, 852, 1555
Bsp19I	CCATGG	2 cut(s)	506, 1752
BspANI	GGCC	5 cut(s)	968, 1165, 1279, 1470, 1686
BspCNI	CTCAG	3 cut(s)	646, 1687, 1742
BspDI	ATCGAT	1 cut(s)	1652
BspFNI	CGCG	1 cut(s)	153
BspHI	TCATGA	2 cut(s)	705, 855
BspMAI	CTGCAG	2 cut(s)	478, 1596
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	458, 1550
BsrDI	GCAATG	2 cut(s)	948, 1521
BsrI	ACTGG	4 cut(s)	655, 1020, 1471, 1569
BssECI	CCNNGG	5 cut(s)	506, 599, 969, 1160, 1752
BssMI	GATC	4 cut(s)	463, 702, 852, 1555
BssNI	GRCGYC	1 cut(s)	1645
BssSI	CACGAG	1 cut(s)	72
BssT1I	CCWWGG	4 cut(s)	506, 599, 969, 1752
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	229, 257
Bst4CI	ACNGT	2 cut(s)	63, 681
Bst6I	CTCTTC	3 cut(s)	43, 286, 556
BstACI	GRCGYC	1 cut(s)	1645
BstAPI	GCANNNNNTGC	1 cut(s)	1213
BstDEI	CTNAG	5 cut(s)	18, 633, 1381, 1695, 1729
BstDSI	CCRYGG	3 cut(s)	506, 1160, 1752
BstF5I	GGATG	6 cut(s)	94, 374, 545, 1039, 1420, 1747
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	4 cut(s)	466, 705, 855, 1558
BstMAI	GTCTC	2 cut(s)	174, 1621
BstMBI	GATC	4 cut(s)	463, 702, 852, 1555
BstMWI	GCNNNNNNNGC	2 cut(s)	1213, 1550
BstNI	CCWGG	2 cut(s)	229, 257
BstNSI	RCATGY	2 cut(s)	404, 1034
BstPAI	GACNNNNGTC	1 cut(s)	1633
BstSCI	CCNGG	2 cut(s)	227, 255
BstSFI	CTRYAG	2 cut(s)	474, 1592
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	682, 1055, 1597
BstV2I	GAAGAC	1 cut(s)	1785
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
Bsu15I	ATCGAT	1 cut(s)	1652
BsuI	GTATCC	1 cut(s)	1370
BsuRI	GGCC	5 cut(s)	968, 1165, 1279, 1470, 1686
BsuTUI	ATCGAT	1 cut(s)	1652
BtgI	CCRYGG	3 cut(s)	506, 1160, 1752
BtsCI	GGATG	6 cut(s)	94, 374, 545, 1039, 1420, 1747
BtsIMutI	CAGTG	2 cut(s)	827, 1104
BveI	ACCTGC	1 cut(s)	238
CciI	TCATGA	2 cut(s)	705, 855
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	2 cut(s)	1277, 1707
ClaI	ATCGAT	1 cut(s)	1652
CseI	GACGC	1 cut(s)	1634
Csp6I	GTAC	3 cut(s)	543, 1368, 1393
CviQI	GTAC	3 cut(s)	543, 1368, 1393
DdeI	CTNAG	5 cut(s)	18, 633, 1381, 1695, 1729
DpnI	GATC	4 cut(s)	465, 704, 854, 1557
DpnII	GATC	4 cut(s)	463, 702, 852, 1555
DraIII	CACNNNGTG	1 cut(s)	1351
EaeI	YGGCCR	2 cut(s)	966, 1468
Eam1104I	CTCTTC	3 cut(s)	43, 286, 556
EarI	CTCTTC	3 cut(s)	43, 286, 556
Eco130I	CCWWGG	4 cut(s)	506, 599, 969, 1752
Eco47I	GGWCC	1 cut(s)	1707
Eco57I	CTGAAG	3 cut(s)	823, 851, 933
EcoO109I	RGGNCCY	1 cut(s)	1707
EcoRI	GAATTC	1 cut(s)	859
EcoRII	CCWGG	2 cut(s)	227, 255
EcoT14I	CCWWGG	4 cut(s)	506, 599, 969, 1752
EcoT22I	ATGCAT	1 cut(s)	1404
ErhI	CCWWGG	4 cut(s)	506, 599, 969, 1752
FaqI	GGGAC	3 cut(s)	667, 677, 1550
Fnu4HI	GCNGC	3 cut(s)	696, 1069, 1611
FokI	GGATG	6 cut(s)	81, 361, 532, 1026, 1427, 1754
Fsp4HI	GCNGC	3 cut(s)	696, 1069, 1611
FspBI	CTAG	5 cut(s)	282, 299, 563, 1313, 1550
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	3 cut(s)	696, 1069, 1611
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	5 cut(s)	968, 1165, 1279, 1470, 1686
HapII	CCGG	1 cut(s)	1234
HgaI	GACGC	1 cut(s)	1634
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	1645
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	1234
HphI	GGTGA	5 cut(s)	588, 732, 765, 869, 1334
Hpy166II	GTNNAC	2 cut(s)	253, 773
Hpy188III	TCNNGA	6 cut(s)	72, 351, 706, 856, 1247, 1775
Hpy8I	GTNNAC	2 cut(s)	253, 773
Hpy99I	CGWCG	1 cut(s)	1639
HpyAV	CCTTC	5 cut(s)	15, 24, 834, 1280, 1511
HpyCH4III	ACNGT	2 cut(s)	63, 681
HpyCH4IV	ACGT	1 cut(s)	1634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1213, 1550
HpyF3I	CTNAG	5 cut(s)	18, 633, 1381, 1695, 1729
HpySE526I	ACGT	1 cut(s)	1634
Hsp92I	GRCGYC	1 cut(s)	1645
HspAI	GCGC	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	463, 702, 852, 1555
Lsp1109I	GCAGC	3 cut(s)	682, 1055, 1597
LweI	GCATC	3 cut(s)	42, 1133, 1570
MaeI	CTAG	5 cut(s)	282, 299, 563, 1313, 1550
MaeII	ACGT	1 cut(s)	1634
MaeIII	GTNAC	4 cut(s)	160, 842, 1247, 1462
MalI	GATC	4 cut(s)	465, 704, 854, 1557
MboI	GATC	4 cut(s)	463, 702, 852, 1555
MboII	GAAGA	9 cut(s)	30, 157, 303, 326, 329, 543, 592, 1439, 1790
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	641
MlsI	TGGCCA	1 cut(s)	968
MluNI	TGGCCA	1 cut(s)	968
MlyI	GAGTC	3 cut(s)	473, 659, 1333
MmeI	TCCRAC	1 cut(s)	1719
Mox20I	TGGCCA	1 cut(s)	968
Mph1103I	ATGCAT	1 cut(s)	1404
MroXI	GAANNNNTTC	2 cut(s)	836, 1155
MscI	TGGCCA	1 cut(s)	968
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	3 cut(s)	99, 832, 1159
Msp20I	TGGCCA	1 cut(s)	968
MspI	CCGG	1 cut(s)	1234
MspR9I	CCNGG	2 cut(s)	229, 257
MvaI	CCWGG	2 cut(s)	229, 257
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	1213, 1550
NcoI	CCATGG	2 cut(s)	506, 1752
NdeII	GATC	4 cut(s)	463, 702, 852, 1555
NmeAIII	GCCGAG	1 cut(s)	647
NmuCI	GTSAC	1 cut(s)	1247
NsiI	ATGCAT	1 cut(s)	1404
NspI	RCATGY	2 cut(s)	404, 1034
OliI	CACNNNNGTG	2 cut(s)	832, 1159
PagI	TCATGA	2 cut(s)	705, 855
PciI	ACATGT	1 cut(s)	1030
PdmI	GAANNNNTTC	2 cut(s)	836, 1155
PfeI	GAWTC	8 cut(s)	155, 629, 750, 1151, 1354, 1484, 1529, 1714
PkrI	GCNGC	3 cut(s)	697, 1070, 1612
PleI	GAGTC	3 cut(s)	473, 659, 1333
PpsI	GAGTC	3 cut(s)	473, 659, 1333
PpuMI	RGGWCCY	1 cut(s)	1707
PscI	ACATGT	1 cut(s)	1030
PshAI	GACNNNNGTC	1 cut(s)	1633
Psp5II	RGGWCCY	1 cut(s)	1707
Psp6I	CCWGG	2 cut(s)	227, 255
PspGI	CCWGG	2 cut(s)	227, 255
PspPI	GGNCC	2 cut(s)	1277, 1707
PspPPI	RGGWCCY	1 cut(s)	1707
PstI	CTGCAG	2 cut(s)	478, 1596
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	3 cut(s)	544, 1369, 1394
RsaNI	GTAC	3 cut(s)	543, 1368, 1393
RseI	CAYNNNNRTG	3 cut(s)	99, 832, 1159
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	3 cut(s)	696, 1069, 1611
Sau3AI	GATC	4 cut(s)	463, 702, 852, 1555
Sau96I	GGNCC	2 cut(s)	1277, 1707
ScaI	AGTACT	1 cut(s)	1394
SchI	GAGTC	3 cut(s)	473, 659, 1333
ScrFI	CCNGG	2 cut(s)	229, 257
SduI	GDGCHC	1 cut(s)	641
SfaNI	GCATC	3 cut(s)	42, 1133, 1570
SfcI	CTRYAG	2 cut(s)	474, 1592
SinI	GGWCC	1 cut(s)	1707
SmiMI	CAYNNNNRTG	3 cut(s)	99, 832, 1159
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
SspMI	CTAG	5 cut(s)	282, 299, 563, 1313, 1550
StyD4I	CCNGG	2 cut(s)	227, 255
StyI	CCWWGG	4 cut(s)	506, 599, 969, 1752
TaaI	ACNGT	2 cut(s)	63, 681
TaiI	ACGT	1 cut(s)	1637
TaqI	TCGA	5 cut(s)	482, 898, 1482, 1652, 1712
TatI	WGTACW	2 cut(s)	542, 1392
TfiI	GAWTC	8 cut(s)	155, 629, 750, 1151, 1354, 1484, 1529, 1714
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	2 cut(s)	834, 1111
TseFI	GTSAC	1 cut(s)	1247
TseI	GCWGC	3 cut(s)	695, 1068, 1610
Tsp45I	GTSAC	1 cut(s)	1247
TspDTI	ATGAA	9 cut(s)	66, 110, 630, 742, 872, 1302, 1387, 1431, 1476
TspGWI	ACGGA	2 cut(s)	1128, 1149
TspRI	CASTG	2 cut(s)	834, 1111
VpaK11BI	GGWCC	1 cut(s)	1707
XapI	RAATTY	3 cut(s)	221, 617, 859
XceI	RCATGY	2 cut(s)	404, 1034
XmnI	GAANNNNTTC	2 cut(s)	836, 1155
XspI	CTAG	5 cut(s)	282, 299, 563, 1313, 1550
ZrmI	AGTACT	1 cut(s)	1394
Zsp2I	ATGCAT	1 cut(s)	1404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.