FvH4_4g08510

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
8537746 .. 8541183
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08510.t3

Sequence Viewer

Length: 1806 bp
ATGCCTTCAGTCCCCGCTAAGATACTTATAGGCATCTCTTCAGACTCGGATGAAAGCAAACAGTTGCTGTCACGAGCAATTAGTGTTCTGGCTCATCCGAATGACAACATTGTTGCCATTCATGTTCTTGTTGGCGAGGAGAAGAGGAAATGCAAATCCGTCACGAAGTTTCAATCCCAACTTCGTCGAGCAAAAGCATATGTTATATCTTTGCTTGGAGAATTTGCCAGCAGTTGCCAATCTAAGCAGGTAAATCTGGAAGCTAGAGTAATTTTCTGCTCTAGTATTGAAAAAGGTCTTATTGAGGAAGCAAAATCCATATTTGCAGACTATGTTCTTCTTTGTAGCTCAAGAAACCAATCAAACAGAGTTCCATCCATCACAAGATACTGCTTAAAACATGCCCCGGCCGGTTGCACATTGTTCTTATTGGGAAAATCTACCAAGCCTCAACAAAAGTCAGATTCGCATTCTGAAGACTCAAAAGAAAGCCATCAATCAATTCCATGGTGGACTAAAAATACAATTCAGAGTGGCAGAACTACATCCTCTTCTGAAAATCATGGTATCGAAGAAACGAAGAAAGAAATCACTTCACCAAGAGCTGTTTTAGATGAATTTGAAGTAGAATCTCAGAGCACAGATGATACTGCCAGCTATGTTGACTCGACTGTCACAGAGTCCCCCTCTCTGGCTCCCAAGTTTATGAGCCAAACCAACATAAAGAAGCAAGGATTATCACCATGCAAATTCATCACTTCTTTTTTTGGTTCACCATTTAGAAAAACAAATGACAATTTATCCAATGACCAAAGGAGGTTACCTTCACTGAAGTGCTTCAGCCACAAGGAGATCATGAATTCTACAAACAGCTTCCACCCAGAAAATCTGGTAGGTCGAGGTGGGTATTCTGAAGTATATAGGGGTAATCTTTCCAATGGGCAAGCCATTGCTGTCAAAATGTTGGCCAAGGACAACAACAATGCTAACAAGGAAAAAGAGTTTCTAATGGAACTGGGAGTAATTTTACATGTCAGCCACCCTAATACAGCCAAATTAGTTGGTTGCTGCATTGAAAATGGACTTTACCTCATTTTCAACTTCACTGAAAATGGAACTTTGGCATCTGCACTACATGGTAAATCATGTGAATCACTTCCGTGGTCCATAAGATACAAAATTGTCTTTGGAGTTGCAAAGGGTCTGCATTATCTGCATAAATGCTGTAAGCACCGGATAATACATCGTGACATAAAAGCCTCAAACGTCCTTCTTGGGCCAGATTATGAACCACAGATTACCGATTTTGGACTAGCAAAGTGGCTTCCTAACAAATGGACTCACCATGCTGTGATTCCAGTAGAGGGTACATTTGGATACTTAGCGCCAGAGTACTTCATGCATGGAATTGTAGATGAAAAAACAGATGTTTTTGCATTTGGGGTTCTTCTTTTGGAGATAGTAACTGGCCGAAAGCCTGTGGATTCATCTAAGAAAAACCTTCTACTTTGGGCATTGCCGCACATGGAATCCGGGGACATAGCCAAAATAGCTGATCCAAAACTGGAAGCAAATTATGATGCAGAACAACTGCATAGAGTAGTCCTTGCTGCCTCATACTGTGTGAGACAAACGTCGTTATGGCGTCCATCAATGAGTGAGGTGTTGGAGCTTCTAAACAATGGCCAAAAGTCTGAGAGTGCTAGGACCTCAATTCCGAAGTTCTCCTCAGATGAATTGGATGATTACTCCATGGTTTATGGGTATAGTATTCCGGAAGACATTGATTTGGAGGACTACTTATGA

Protein Analysis

602

Amino Acids

67.04

Weight (kDa)

7.28

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 293 - 379 4.3e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 296 - 379 7.2e-13 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 671
Acc36I ACCTGC 1 cut(s) 238
AccIII TCCGGA 1 cut(s) 1774
AciI CCGC 2 cut(s) 15, 1520
AclWI GGATC 1 cut(s) 1550
AcoI YGGCCR 4 cut(s) 408, 966, 1468, 1684
AcsI RAATTY 4 cut(s) 221, 617, 749, 859
AcuI CTGAAG 5 cut(s) 24, 495, 823, 851, 933
AcyI GRCGYC 1 cut(s) 1645
AfaI GTAC 2 cut(s) 1369, 1394
AfiI CCNNNNNNNGG 2 cut(s) 691, 1364
AflIII ACRYGT 1 cut(s) 1030
AgsI TTSAA 5 cut(s) 173, 290, 623, 1076, 1099
AleI CACNNNNGTG 2 cut(s) 832, 1159
AluBI AGCT 7 cut(s) 263, 348, 605, 657, 873, 1553, 1672
AluI AGCT 7 cut(s) 263, 348, 605, 657, 873, 1553, 1672
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 1 cut(s) 1621
AlwI GGATC 1 cut(s) 1550
AlwNI CAGNNNCTG 1 cut(s) 67
Aor13HI TCCGGA 1 cut(s) 1774
AoxI GGCC 5 cut(s) 408, 966, 1277, 1468, 1684
ApeKI GCWGC 2 cut(s) 1068, 1610
ApoI RAATTY 4 cut(s) 221, 617, 749, 859
Asp700I GAANNNNTTC 2 cut(s) 836, 1155
AspLEI GCGC 1 cut(s) 1387
AspS9I GGNCC 3 cut(s) 1164, 1277, 1707
AsuC2I CCSGG 2 cut(s) 407, 1534
AsuHPI GGTGA 4 cut(s) 588, 732, 765, 1334
AvaII GGWCC 2 cut(s) 1164, 1707
BalI TGGCCA 2 cut(s) 968, 1686
BauI CACGAG 1 cut(s) 72
BbsI GAAGAC 2 cut(s) 483, 1785
Bbv12I GWGCWC 1 cut(s) 641
BbvI GCAGC 2 cut(s) 1055, 1597
BccI CCATC 4 cut(s) 382, 386, 501, 1657
BciVI GTATCC 1 cut(s) 1370
BcnI CCSGG 2 cut(s) 407, 1534
BcoDI GTCTC 1 cut(s) 1621
BfaI CTAG 4 cut(s) 264, 282, 1313, 1704
BfoI RGCGCY 1 cut(s) 1388
BfuAI ACCTGC 1 cut(s) 238
BfuI GTATCC 1 cut(s) 1370
BisI GCNGC 3 cut(s) 1069, 1520, 1611
BlsI GCNGC 3 cut(s) 1070, 1521, 1612
BmcAI AGTACT 1 cut(s) 1394
Bme1390I CCNGG 2 cut(s) 407, 1534
Bme18I GGWCC 2 cut(s) 1164, 1707
BmgT120I GGNCC 3 cut(s) 1164, 1277, 1707
BmiI GGNNCC 1 cut(s) 696
BmrFI CCNGG 2 cut(s) 407, 1534
BmrI ACTGGG 1 cut(s) 1025
BmsI GCATC 3 cut(s) 42, 1133, 1570
BmuI ACTGGG 1 cut(s) 1025
BoxI GACNNNNGTC 1 cut(s) 1633
BpiI GAAGAC 2 cut(s) 483, 1785
BplI GAGNNNNNCTC 2 cut(s) 671, 703
BpuEI CTTGAG 1 cut(s) 334
BpuMI CCSGG 2 cut(s) 407, 1534
BsaHI GRCGYC 1 cut(s) 1645
BsaJI CCNNGG 6 cut(s) 405, 506, 969, 1160, 1533, 1752
BsaWI WCCGGW 2 cut(s) 1233, 1774
Bsc4I CCNNNNNNNGG 2 cut(s) 691, 1364
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 4 cut(s) 1020, 1358, 1471, 1569
Bse3DI GCAATG 2 cut(s) 948, 1514
BseAI TCCGGA 1 cut(s) 1774
BseDI CCNNGG 6 cut(s) 405, 506, 969, 1160, 1533, 1752
BseGI GGATG 5 cut(s) 55, 94, 374, 545, 1747
BseLI CCNNNNNNNGG 2 cut(s) 691, 1364
BseMI GCAATG 2 cut(s) 948, 1514
BseMII CTCAG 3 cut(s) 647, 1686, 1743
BseNI ACTGG 4 cut(s) 1020, 1358, 1471, 1569
BseRI GAGGAG 2 cut(s) 152, 1717
BseX3I CGGCCG 1 cut(s) 408
BseXI GCAGC 2 cut(s) 1055, 1597
BsgI GTGCAG 1 cut(s) 1113
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 5 cut(s) 410, 968, 1279, 1470, 1686
BsiEI CGRYCG 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 641
BsiSI CCGG 5 cut(s) 407, 411, 1234, 1533, 1775
BslFI GGGAC 2 cut(s) 667, 1550
BslI CCNNNNNNNGG 2 cut(s) 691, 1364
BsmAI GTCTC 1 cut(s) 1621
BsmFI GGGAC 2 cut(s) 667, 1550
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 5 cut(s) 410, 968, 1279, 1470, 1686
Bsp1286I GDGCHC 1 cut(s) 641
Bsp13I TCCGGA 1 cut(s) 1774
Bsp143I GATC 2 cut(s) 852, 1555
Bsp19I CCATGG 2 cut(s) 506, 1752
BspACI CCGC 2 cut(s) 15, 1520
BspANI GGCC 5 cut(s) 410, 968, 1279, 1470, 1686
BspCNI CTCAG 3 cut(s) 646, 1687, 1742
BspEI TCCGGA 1 cut(s) 1774
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 1 cut(s) 696
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 1 cut(s) 1550
BsrDI GCAATG 2 cut(s) 948, 1514
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 4 cut(s) 1020, 1358, 1471, 1569
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 6 cut(s) 405, 506, 969, 1160, 1533, 1752
BssMI GATC 2 cut(s) 852, 1555
BssNI GRCGYC 1 cut(s) 1645
BssSI CACGAG 1 cut(s) 72
BssT1I CCWWGG 3 cut(s) 506, 969, 1752
Bst2BI CACGAG 1 cut(s) 72
Bst4CI ACNGT 3 cut(s) 63, 673, 1622
Bst6I CTCTTC 3 cut(s) 43, 137, 556
BstACI GRCGYC 1 cut(s) 1645
BstAPI GCANNNNNTGC 1 cut(s) 1213
BstC8I GCNNGC 3 cut(s) 229, 655, 945
BstDEI CTNAG 7 cut(s) 18, 243, 633, 1381, 1491, 1695, 1729
BstDSI CCRYGG 3 cut(s) 506, 1160, 1752
BstEII GGTNACC 1 cut(s) 819
BstF5I GGATG 5 cut(s) 55, 94, 374, 545, 1747
BstH2I RGCGCY 1 cut(s) 1388
BstHHI GCGC 1 cut(s) 1387
BstKTI GATC 2 cut(s) 855, 1558
BstMAI GTCTC 1 cut(s) 1621
BstMBI GATC 2 cut(s) 852, 1555
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 2 cut(s) 1213, 1550
BstNSI RCATGY 2 cut(s) 404, 1034
BstPAI GACNNNNGTC 1 cut(s) 1633
BstPI GGTNACC 1 cut(s) 819
BstSCI CCNGG 2 cut(s) 405, 1532
BstV1I GCAGC 2 cut(s) 1055, 1597
BstV2I GAAGAC 2 cut(s) 483, 1785
BstZI CGGCCG 1 cut(s) 408
BsuI GTATCC 1 cut(s) 1370
BsuRI GGCC 5 cut(s) 410, 968, 1279, 1470, 1686
BtgI CCRYGG 3 cut(s) 506, 1160, 1752
BtsCI GGATG 5 cut(s) 55, 94, 374, 545, 1747
BtsIMutI CAGTG 2 cut(s) 827, 1104
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 3 cut(s) 229, 655, 945
CaiI CAGNNNCTG 1 cut(s) 67
CciI TCATGA 1 cut(s) 855
CfoI GCGC 1 cut(s) 1387
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 3 cut(s) 1164, 1277, 1707
CseI GACGC 1 cut(s) 1634
Csp6I GTAC 2 cut(s) 1368, 1393
CviQI GTAC 2 cut(s) 1368, 1393
DdeI CTNAG 7 cut(s) 18, 243, 633, 1381, 1491, 1695, 1729
DpnI GATC 2 cut(s) 854, 1557
DpnII GATC 2 cut(s) 852, 1555
DrdI GACNNNNNNGTC 1 cut(s) 671
DseDI GACNNNNNNGTC 1 cut(s) 671
EaeI YGGCCR 4 cut(s) 408, 966, 1468, 1684
EagI CGGCCG 1 cut(s) 408
Eam1104I CTCTTC 3 cut(s) 43, 137, 556
EarI CTCTTC 3 cut(s) 43, 137, 556
EclXI CGGCCG 1 cut(s) 408
Eco130I CCWWGG 3 cut(s) 506, 969, 1752
Eco47I GGWCC 2 cut(s) 1164, 1707
Eco52I CGGCCG 1 cut(s) 408
Eco57I CTGAAG 5 cut(s) 24, 495, 823, 851, 933
Eco91I GGTNACC 1 cut(s) 819
EcoO109I RGGNCCY 1 cut(s) 1707
EcoO65I GGTNACC 1 cut(s) 819
EcoRI GAATTC 1 cut(s) 859
EcoT14I CCWWGG 3 cut(s) 506, 969, 1752
EcoT22I ATGCAT 1 cut(s) 1404
ErhI CCWWGG 3 cut(s) 506, 969, 1752
FaqI GGGAC 2 cut(s) 667, 1550
FauI CCCGC 1 cut(s) 22
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 3 cut(s) 1069, 1520, 1611
FokI GGATG 5 cut(s) 62, 81, 361, 532, 1754
Fsp4HI GCNGC 3 cut(s) 1069, 1520, 1611
FspBI CTAG 4 cut(s) 264, 282, 1313, 1704
GlaI GCGC 1 cut(s) 1386
GluI GCNGC 3 cut(s) 1069, 1520, 1611
HaeII RGCGCY 1 cut(s) 1388
HaeIII GGCC 5 cut(s) 410, 968, 1279, 1470, 1686
HapII CCGG 5 cut(s) 407, 411, 1234, 1533, 1775
HgaI GACGC 1 cut(s) 1634
HhaI GCGC 1 cut(s) 1387
Hin1I GRCGYC 1 cut(s) 1645
Hin6I GCGC 1 cut(s) 1385
HinP1I GCGC 1 cut(s) 1385
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HpaII CCGG 5 cut(s) 407, 411, 1234, 1533, 1775
HphI GGTGA 4 cut(s) 588, 732, 765, 1334
Hpy166II GTNNAC 3 cut(s) 513, 664, 773
Hpy188III TCNNGA 7 cut(s) 72, 163, 257, 351, 856, 1247, 1775
Hpy8I GTNNAC 3 cut(s) 513, 664, 773
Hpy99I CGWCG 2 cut(s) 189, 1639
HpyAV CCTTC 4 cut(s) 15, 834, 1280, 1511
HpyCH4III ACNGT 3 cut(s) 63, 673, 1622
HpyCH4IV ACGT 2 cut(s) 1266, 1634
HpyF10VI GCNNNNNNNGC 2 cut(s) 1213, 1550
HpyF3I CTNAG 7 cut(s) 18, 243, 633, 1381, 1491, 1695, 1729
HpySE526I ACGT 2 cut(s) 1266, 1634
Hsp92I GRCGYC 1 cut(s) 1645
HspAI GCGC 1 cut(s) 1385
Kpn2I TCCGGA 1 cut(s) 1774
Kzo9I GATC 2 cut(s) 852, 1555
LmnI GCTCC 2 cut(s) 700, 1669
Lsp1109I GCAGC 2 cut(s) 1055, 1597
LweI GCATC 3 cut(s) 42, 1133, 1570
MaeI CTAG 4 cut(s) 264, 282, 1313, 1704
MaeII ACGT 2 cut(s) 1266, 1634
MaeIII GTNAC 6 cut(s) 69, 160, 673, 819, 1247, 1462
MalI GATC 2 cut(s) 854, 1557
MboI GATC 2 cut(s) 852, 1555
MboII GAAGA 9 cut(s) 30, 154, 329, 488, 543, 584, 592, 1439, 1790
MhlI GDGCHC 1 cut(s) 641
MlsI TGGCCA 2 cut(s) 968, 1686
MluNI TGGCCA 2 cut(s) 968, 1686
MlyI GAGTC 5 cut(s) 38, 473, 659, 689, 1333
MmeI TCCRAC 1 cut(s) 1647
Mox20I TGGCCA 2 cut(s) 968, 1686
Mph1103I ATGCAT 1 cut(s) 1404
MroI TCCGGA 1 cut(s) 1774
MroXI GAANNNNTTC 2 cut(s) 836, 1155
MscI TGGCCA 2 cut(s) 968, 1686
MseI TTAA 1 cut(s) 395
MslI CAYNNNNRTG 3 cut(s) 99, 832, 1159
Msp20I TGGCCA 2 cut(s) 968, 1686
MspI CCGG 5 cut(s) 407, 411, 1234, 1533, 1775
MspR9I CCNGG 2 cut(s) 407, 1534
Mva1269I GAATGC 1 cut(s) 469
MwoI GCNNNNNNNGC 2 cut(s) 1213, 1550
NciI CCSGG 2 cut(s) 407, 1534
NcoI CCATGG 2 cut(s) 506, 1752
NdeI CATATG 1 cut(s) 199
NdeII GATC 2 cut(s) 852, 1555
NlaIV GGNNCC 1 cut(s) 696
NmuCI GTSAC 4 cut(s) 69, 160, 673, 1247
NsiI ATGCAT 1 cut(s) 1404
NspI RCATGY 2 cut(s) 404, 1034
OliI CACNNNNGTG 2 cut(s) 832, 1159
PagI TCATGA 1 cut(s) 855
PciI ACATGT 1 cut(s) 1030
PctI GAATGC 1 cut(s) 469
PdmI GAANNNNTTC 2 cut(s) 836, 1155
PfeI GAWTC 6 cut(s) 464, 629, 1151, 1354, 1484, 1529
PkrI GCNGC 3 cut(s) 1070, 1521, 1612
PleI GAGTC 5 cut(s) 38, 473, 659, 688, 1333
PpsI GAGTC 5 cut(s) 38, 473, 659, 688, 1333
PpuMI RGGWCCY 1 cut(s) 1707
PscI ACATGT 1 cut(s) 1030
PshAI GACNNNNGTC 1 cut(s) 1633
Psp5II RGGWCCY 1 cut(s) 1707
PspEI GGTNACC 1 cut(s) 819
PspN4I GGNNCC 1 cut(s) 696
PspPI GGNCC 3 cut(s) 1164, 1277, 1707
PspPPI RGGWCCY 1 cut(s) 1707
PstNI CAGNNNCTG 1 cut(s) 67
RsaI GTAC 2 cut(s) 1369, 1394
RsaNI GTAC 2 cut(s) 1368, 1393
RseI CAYNNNNRTG 3 cut(s) 99, 832, 1159
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 3 cut(s) 1069, 1520, 1611
Sau3AI GATC 2 cut(s) 852, 1555
Sau96I GGNCC 3 cut(s) 1164, 1277, 1707
ScaI AGTACT 1 cut(s) 1394
SchI GAGTC 5 cut(s) 38, 473, 659, 689, 1333
ScrFI CCNGG 2 cut(s) 407, 1534
SduI GDGCHC 1 cut(s) 641
SfaNI GCATC 3 cut(s) 42, 1133, 1570
SinI GGWCC 2 cut(s) 1164, 1707
SmiMI CAYNNNNRTG 3 cut(s) 99, 832, 1159
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
SsiI CCGC 2 cut(s) 15, 1520
SspMI CTAG 4 cut(s) 264, 282, 1313, 1704
StyD4I CCNGG 2 cut(s) 405, 1532
StyI CCWWGG 3 cut(s) 506, 969, 1752
TaaI ACNGT 3 cut(s) 63, 673, 1622
TaiI ACGT 2 cut(s) 1269, 1637
TaqI TCGA 4 cut(s) 187, 570, 668, 898
TatI WGTACW 1 cut(s) 1392
TauI GCSGC 1 cut(s) 1522
TfiI GAWTC 6 cut(s) 464, 629, 1151, 1354, 1484, 1529
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 2 cut(s) 834, 1111
TseFI GTSAC 4 cut(s) 69, 160, 673, 1247
TseI GCWGC 2 cut(s) 1068, 1610
Tsp45I GTSAC 4 cut(s) 69, 160, 673, 1247
TspGWI ACGGA 2 cut(s) 148, 1149
TspRI CASTG 2 cut(s) 834, 1111
VpaK11BI GGWCC 2 cut(s) 1164, 1707
XapI RAATTY 4 cut(s) 221, 617, 749, 859
XceI RCATGY 2 cut(s) 404, 1034
XmnI GAANNNNTTC 2 cut(s) 836, 1155
XspI CTAG 4 cut(s) 264, 282, 1313, 1704
ZrmI AGTACT 1 cut(s) 1394
Zsp2I ATGCAT 1 cut(s) 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.