Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007925

Physical Location & Seq

Genomic Coordinates Reverse (-)

23340323 .. 23342392

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37552

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAGCCAAACCAACACAAAGAAGCAAGGATTATCACCATGCAGATTCATCACTTCTTTCTTTGGTTCACCATTCAGAAAAACAAATGGCAGTTTATCAAACAACGAAAAGCGATTACCTTCACTGAAGTGCTTCAGTTACAAGGAGATCATGAATTCTACAAACAGCTTTCACCCAGATAATCTGGTAGGTCGAGGTGGGTATTCTGAAGTATATAGGGGTAATCTTTCTGATGGGCAAACCATTGCTGTCAAAATGTTGGCCAAGGACAACAACAATGCTAACAAGGAAAAAGAGTTCCTAATGGAACTGGGAGTAATTTTACATGTCAGCCATCCTAATACAGCCAAATTAGTTGGTTGCTGCATTGAAAATGGACTTTACCTCATTTTCAACTTCACTGAAAACGGCACTTTGGCATCTGCATTACATGGTAAATCATGTGAATCACTTCCGTGGCCTATTAGATACAAAATTGTCATTGGAGTTGCAAAGGGTCTGCATTATCTGCATAAATGTTGTAAGCACCGGATAATACATCGTGACATAAAATCCTCAAATGTCCTTCTTGGGCCAGATTATGAACCACAGATTACAGATTTTGGACTAGCAAAATGGCTTCCTAACAAATGGACTCACCATGCTGTGATTCCGATAGAGGGTACATTTGGATACTTAGCACCAGAGTACTTCATGCATGGAATTGTGGATGAAAAAACAGATGTTTTTGCATTTGGGGTTCTTCTTTTGGAGATAGTAACTGGCCGAAAGCCTGTCGATTCATCTACAAAAAACCTTCTACTTTGGGCAATGCCACACATGGAATCAGGGGACATAGCTAAACTAGCTGATCCAAAACTGGAAGCAAATTATGATGCAGAACAACTGCAGAGAGTAGTCCTTGCTGCCTCATATTGTGTGAGACAAACGTCGGTATGGCGTCCATCGATGAGTGAGGTGTTAGAGCTTCTAAACAAAGGCCATAAGTCTGAGATTGCAAGGACCTCGATTCCAAAGTTTTCCTCAGATGAGTTGGATGATTACTCCATGGTTTTTGGTTATGATATTCCAGAAGACATTGATTTAGAGGACTATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Usp

Protein Analysis

366

Amino Acids

41.16

Weight (kDa)

6.67

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	58 - 321	1.2e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	61 - 323	3e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57670
fragaria_vesca	FvH4_4g08510 FvH4_4g08510 FvH4_4g08510 FvH4_4g08510
malus_domestica	MD13G1263500.v1.1 MD16G1264900.v1.1
prunus_persica	Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1 Prupe.1G094200_v2.0.a1
pyrus_communis	pycom16g23440
rosa_chinensis	RchiOBHm_Chr4g0403851 RchiOBHm_Chr4g0403861
rosa_laevigata	RLG00000008945
rosa_multiflora	Rmu_sc0005134.1_g000014
rosa_roxburghii	Rroxscaffold_5G00348470
rosa_rugosa	Rorug04G0046100 Rorug04G0046100
rosa_samantha	Rh4AG121300 Rh4BG114600 Rh4CG129900 Rh4DG114600
rosa_wichuraiana	Rw4G009890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	845
AcoI	YGGCCR	2 cut(s)	261, 763
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	3 cut(s)	118, 146, 228
AcyI	GRCGYC	1 cut(s)	940
AfaI	GTAC	2 cut(s)	664, 689
AfiI	CCNNNNNNNGG	1 cut(s)	659
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	371, 394
AleI	CACNNNNGTG	2 cut(s)	127, 454
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	4 cut(s)	168, 839, 848, 967
AluI	AGCT	4 cut(s)	168, 839, 848, 967
Alw26I	GTCTC	1 cut(s)	916
AlwI	GGATC	1 cut(s)	845
AoxI	GGCC	5 cut(s)	261, 458, 572, 763, 979
ApeKI	GCWGC	2 cut(s)	363, 905
ApoI	RAATTY	1 cut(s)	154
Asp700I	GAANNNNTTC	2 cut(s)	131, 450
AspS9I	GGNCC	2 cut(s)	572, 1002
AsuHPI	GGTGA	4 cut(s)	27, 60, 164, 629
AvaII	GGWCC	1 cut(s)	1002
BalI	TGGCCA	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	1080
BbvI	GCAGC	2 cut(s)	350, 892
BccI	CCATC	3 cut(s)	227, 342, 952
BceAI	ACGGC	1 cut(s)	424
BcgI	CGANNNNNNTGC	2 cut(s)	987, 1021
BciVI	GTATCC	1 cut(s)	665
BcoDI	GTCTC	1 cut(s)	916
BfaI	CTAG	2 cut(s)	608, 845
BfmI	CTRYAG	1 cut(s)	887
BfuI	GTATCC	1 cut(s)	665
BisI	GCNGC	2 cut(s)	364, 906
BlsI	GCNGC	2 cut(s)	365, 907
BmcAI	AGTACT	1 cut(s)	689
Bme18I	GGWCC	1 cut(s)	1002
BmgT120I	GGNCC	2 cut(s)	572, 1002
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	2 cut(s)	428, 865
BmuI	ACTGGG	1 cut(s)	320
BoxI	GACNNNNGTC	1 cut(s)	928
BpiI	GAAGAC	1 cut(s)	1080
Bsa29I	ATCGAT	1 cut(s)	947
BsaHI	GRCGYC	1 cut(s)	940
BsaJI	CCNNGG	3 cut(s)	264, 455, 1047
BsaWI	WCCGGW	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse1I	ACTGG	3 cut(s)	315, 766, 864
Bse3DI	GCAATG	2 cut(s)	243, 816
BseCI	ATCGAT	1 cut(s)	947
BseDI	CCNNGG	3 cut(s)	264, 455, 1047
BseGI	GGATG	3 cut(s)	334, 715, 1042
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseMI	GCAATG	2 cut(s)	243, 816
BseMII	CTCAG	2 cut(s)	981, 1038
BseNI	ACTGG	3 cut(s)	315, 766, 864
BseXI	GCAGC	2 cut(s)	350, 892
BshFI	GGCC	5 cut(s)	263, 460, 574, 765, 981
BshVI	ATCGAT	1 cut(s)	947
BsiSI	CCGG	1 cut(s)	529
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmAI	GTCTC	1 cut(s)	916
BsmFI	GGGAC	1 cut(s)	845
BsnI	GGCC	5 cut(s)	263, 460, 574, 765, 981
Bsp143I	GATC	2 cut(s)	147, 850
Bsp19I	CCATGG	1 cut(s)	1047
BspANI	GGCC	5 cut(s)	263, 460, 574, 765, 981
BspCNI	CTCAG	2 cut(s)	982, 1037
BspDI	ATCGAT	1 cut(s)	947
BspHI	TCATGA	1 cut(s)	150
BspMAI	CTGCAG	1 cut(s)	891
BspPI	GGATC	1 cut(s)	845
BsrDI	GCAATG	2 cut(s)	243, 816
BsrI	ACTGG	3 cut(s)	315, 766, 864
BssECI	CCNNGG	3 cut(s)	264, 455, 1047
BssMI	GATC	2 cut(s)	147, 850
BssNI	GRCGYC	1 cut(s)	940
BssT1I	CCWWGG	2 cut(s)	264, 1047
BstACI	GRCGYC	1 cut(s)	940
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstDEI	CTNAG	3 cut(s)	676, 990, 1024
BstDSI	CCRYGG	2 cut(s)	455, 1047
BstF5I	GGATG	3 cut(s)	334, 715, 1042
BstKTI	GATC	2 cut(s)	150, 853
BstMAI	GTCTC	1 cut(s)	916
BstMBI	GATC	2 cut(s)	147, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 845
BstNSI	RCATGY	1 cut(s)	329
BstPAI	GACNNNNGTC	1 cut(s)	928
BstSFI	CTRYAG	1 cut(s)	887
BstV1I	GCAGC	2 cut(s)	350, 892
BstV2I	GAAGAC	1 cut(s)	1080
Bsu15I	ATCGAT	1 cut(s)	947
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	5 cut(s)	263, 460, 574, 765, 981
BsuTUI	ATCGAT	1 cut(s)	947
BtgI	CCRYGG	2 cut(s)	455, 1047
BtsCI	GGATG	3 cut(s)	334, 715, 1042
BtsIMutI	CAGTG	2 cut(s)	122, 399
CciI	TCATGA	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	572, 1002
ClaI	ATCGAT	1 cut(s)	947
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	2 cut(s)	663, 688
CviQI	GTAC	2 cut(s)	663, 688
DdeI	CTNAG	3 cut(s)	676, 990, 1024
DpnI	GATC	2 cut(s)	149, 852
DpnII	GATC	2 cut(s)	147, 850
EaeI	YGGCCR	2 cut(s)	261, 763
Eco130I	CCWWGG	2 cut(s)	264, 1047
Eco47I	GGWCC	1 cut(s)	1002
Eco57I	CTGAAG	3 cut(s)	118, 146, 228
EcoO109I	RGGNCCY	1 cut(s)	1002
EcoRI	GAATTC	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	264, 1047
EcoT22I	ATGCAT	1 cut(s)	699
ErhI	CCWWGG	2 cut(s)	264, 1047
FaqI	GGGAC	1 cut(s)	845
Fnu4HI	GCNGC	2 cut(s)	364, 906
FokI	GGATG	3 cut(s)	321, 722, 1049
Fsp4HI	GCNGC	2 cut(s)	364, 906
FspBI	CTAG	2 cut(s)	608, 845
GluI	GCNGC	2 cut(s)	364, 906
HaeIII	GGCC	5 cut(s)	263, 460, 574, 765, 981
HapII	CCGG	1 cut(s)	529
HgaI	GACGC	1 cut(s)	929
Hin1I	GRCGYC	1 cut(s)	940
HinfI	GANTC	7 cut(s)	45, 446, 634, 649, 779, 824, 1009
HpaII	CCGG	1 cut(s)	529
HphI	GGTGA	4 cut(s)	27, 60, 164, 629
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	6 cut(s)	77, 208, 232, 654, 991, 1027
Hpy188III	TCNNGA	3 cut(s)	151, 542, 1070
Hpy8I	GTNNAC	1 cut(s)	68
Hpy99I	CGWCG	1 cut(s)	934
HpyAV	CCTTC	3 cut(s)	129, 575, 806
HpyCH4IV	ACGT	1 cut(s)	929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 845
HpyF3I	CTNAG	3 cut(s)	676, 990, 1024
HpySE526I	ACGT	1 cut(s)	929
Hsp92I	GRCGYC	1 cut(s)	940
Kzo9I	GATC	2 cut(s)	147, 850
Lsp1109I	GCAGC	2 cut(s)	350, 892
LweI	GCATC	2 cut(s)	428, 865
MaeI	CTAG	2 cut(s)	608, 845
MaeII	ACGT	1 cut(s)	929
MaeIII	GTNAC	3 cut(s)	137, 542, 757
MalI	GATC	2 cut(s)	149, 852
MboI	GATC	2 cut(s)	147, 850
MboII	GAAGA	2 cut(s)	734, 1085
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	6 cut(s)	154, 318, 350, 474, 702, 868
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	628
MmeI	TCCRAC	1 cut(s)	1014
MnlI	CCTC	9 cut(s)	188, 395, 565, 652, 919, 949, 1015, 1033, 1081
Mox20I	TGGCCA	1 cut(s)	263
Mph1103I	ATGCAT	1 cut(s)	699
MroXI	GAANNNNTTC	2 cut(s)	131, 450
MscI	TGGCCA	1 cut(s)	263
MslI	CAYNNNNRTG	2 cut(s)	127, 454
Msp20I	TGGCCA	1 cut(s)	263
MspI	CCGG	1 cut(s)	529
MwoI	GCNNNNNNNGC	2 cut(s)	508, 845
NcoI	CCATGG	1 cut(s)	1047
NdeII	GATC	2 cut(s)	147, 850
NmuCI	GTSAC	1 cut(s)	542
NsiI	ATGCAT	1 cut(s)	699
NspI	RCATGY	1 cut(s)	329
OliI	CACNNNNGTG	2 cut(s)	127, 454
PagI	TCATGA	1 cut(s)	150
PciI	ACATGT	1 cut(s)	325
PdmI	GAANNNNTTC	2 cut(s)	131, 450
PfeI	GAWTC	6 cut(s)	45, 446, 649, 779, 824, 1009
PkrI	GCNGC	2 cut(s)	365, 907
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	1002
PscI	ACATGT	1 cut(s)	325
PshAI	GACNNNNGTC	1 cut(s)	928
Psp5II	RGGWCCY	1 cut(s)	1002
PspPI	GGNCC	2 cut(s)	572, 1002
PspPPI	RGGWCCY	1 cut(s)	1002
PstI	CTGCAG	1 cut(s)	891
RsaI	GTAC	2 cut(s)	664, 689
RsaNI	GTAC	2 cut(s)	663, 688
RseI	CAYNNNNRTG	2 cut(s)	127, 454
SatI	GCNGC	2 cut(s)	364, 906
Sau3AI	GATC	2 cut(s)	147, 850
Sau96I	GGNCC	2 cut(s)	572, 1002
ScaI	AGTACT	1 cut(s)	689
SchI	GAGTC	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	428, 865
SfcI	CTRYAG	1 cut(s)	887
SinI	GGWCC	1 cut(s)	1002
SmiMI	CAYNNNNRTG	2 cut(s)	127, 454
Sse9I	AATT	6 cut(s)	154, 318, 350, 474, 702, 868
SspMI	CTAG	2 cut(s)	608, 845
StyI	CCWWGG	2 cut(s)	264, 1047
TaiI	ACGT	1 cut(s)	932
TaqI	TCGA	4 cut(s)	193, 777, 947, 1007
TasI	AATT	6 cut(s)	154, 318, 350, 474, 702, 868
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	6 cut(s)	45, 446, 649, 779, 824, 1009
TscAI	CASTG	2 cut(s)	129, 406
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	2 cut(s)	363, 905
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	6 cut(s)	37, 167, 597, 682, 726, 771
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	2 cut(s)	129, 406
VpaK11BI	GGWCC	1 cut(s)	1002
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	1 cut(s)	329
XmnI	GAANNNNTTC	2 cut(s)	131, 450
XspI	CTAG	2 cut(s)	608, 845
ZrmI	AGTACT	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.