pycom16g23440

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
24389849 .. 24392682
2834 bp
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UTR
Exon/CDS
Intron
pycom16g23440.1

Sequence Viewer

Length: 1830 bp
ATGACAAACAGAATGCGGCCTTCAGTCCCGTCTAAAATACTCGTAGGCATATCCTCCGATGCAAATGACAGCCGGGAATTGCTCTCATGGCCCATCAGAGTTCTTGCTCTTCCAAATGACAACATTGTTGCCATCCATGTTCTTGTTGGCGAGGAGAGGAAACAGCACGAATTAGCAACTAAAAATCAATCGCAGCTTCGTCGAGCAAAAGCCAATGTTATATCTGTGCTTGGAGAATTTGCCAGGAGTTGCCAATCCAAGCAGGTCAATTTAGAAGCAAGAGTGGTTTTTAGCTCAAGTGTTGGAAGAGGCCTCATTGAGGAAGCAAAATCACTTTCAGCTGACTATCTTCTTCTTGGTGGCTCAAGAAACCAATCCAAAAGAACTCCATCCATCACAAAATATTGCTTCAAGCATGCCCCGGCTAATTGCACACTGGTTTTACTTGGGAAATTAAGGCAACCTCAACAAAATTCAGATTCAGAATCTGCAAACTCTAAAGAAATCCTTCAATCAAGTTCAAGAACGTCGTTGCGAGATATCATGCACAGTAGCAGAACTACATCCTTTTCTGAAAAGCAAACTGTCCAAGAAACAGGGAACAAAAACCCTTCACCAGGAACTGTTTTACATGAATTTGAAGCTGAATCTCAGAGCACAGAAGATGATACCTGTAGCTATGCAGACTCGACCATTACAGCATCCCCCTCTCTTGCTACTCCCAATTTCAAAAACCAAGCCAACCTAAGAAAACAACGATTGTCACCTTGCAGAATCATCACTTCATTTTTAGGTTCACCATTCAGAAAACGAAATGGAAGTTTATCCAAGAACGAACTGCAGCTACCTTCATTGAAGTGCTTCAGCTACAAGGAGATCATGAATTCCACAAACAACTTCCAACCAGATAATATAGTAGGTCGAGGTGGGTATTCAGAAGTATATAAGGGCGATCTTTCTGATGGAAGACGCATTGCGGTTAAGATGTTGGCCAAGGACAGCAAGGATGCTAACAAGGAAAAAGAGTTCCTCATGGAATTGGGTGTAATTTTACATGTCAGCCATCCTAATACTGCTAACTTAGTTGGTTGCTGCATTGAAAACGGACTCTACCTGATCTTCGATTTCTCTCCAAAAGGAAATTTGTCATCTGCTTTGCATGGTAAATCCTGCGAGTCGCTTTCGTGGCCTATTAGATACAAGATTGCCATTGGAGTTGCAAGAGGTCTGCACTATCTACATAAATGTTGCAAGCATCGAATAATCCATCGGGACATAAAAGCCTCAAATGTCCTTCTGGGACCAGATTATGAGCCGAAGATTACAGATTTCGGACTAGCAAAGTGGCTTCCTAACAAATGGACTCACCATGCTATGCTTCCAATTGAGGGTACATTTGGGTACTTAGCACCAGAGTACTTCATGAACGGAATTGTCGATGAAAAAATTGATGTTTTTGCATTTGGGGTTCTTCTTATGGAAATTGTAACTGGAAGAAAGCCTGTGGATTCATCAAAACTAAACCTTCTCGTATGGGCAAAGCCTCTTATGGAATCAGGGGACATAGCCAAACTAGCTGATCCAAAACTGGAAGGAAAATATGATGCAGAACAACTGCAGAGAGTAGTGCTTACAGCTTCCAATTGTGTGAGACAATCCTCAGTATGGCGTCCCGCAATGAGTGAGGTGTTAGAGCTTCTAACCAATGGCCACCACTCTGAAGTTGCAAGGAGCTGGATTCCTAAGTTTTCATCGGATGAGTTGGATGATTATTCGATGGTTTATGGATACGAAGTTCCAGTACATATTGATTTGGAGAAATACTTATGA

Protein Analysis

610

Amino Acids

67.91

Weight (kDa)

8.85

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 12 - 147 5.4e-06 Universal stress protein family
Pkinase PF00069 302 - 509 4.1e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 304 - 565 6.1e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
AciI CCGC 3 cut(s) 16, 977, 1674
AclWI GGATC 1 cut(s) 1574
AcoI YGGCCR 2 cut(s) 990, 1708
AcsI RAATTY 5 cut(s) 236, 472, 635, 883, 1141
AcuI CTGAAG 3 cut(s) 6, 847, 1740
AcyI GRCGYC 1 cut(s) 1669
AfaI GTAC 4 cut(s) 1393, 1403, 1418, 1803
AfiI CCNNNNNNNGG 4 cut(s) 319, 617, 1388, 1665
AflIII ACRYGT 1 cut(s) 1054
AgsI TTSAA 7 cut(s) 412, 512, 522, 641, 730, 856, 1100
AjnI CCWGG 2 cut(s) 242, 616
AloI GAACNNNNNNTCC 4 cut(s) 1010, 1042, 1779, 1811
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 1 cut(s) 1645
AlwI GGATC 1 cut(s) 1574
AlwNI CAGNNNCTG 2 cut(s) 488, 623
AoxI GGCC 6 cut(s) 17, 89, 310, 990, 1187, 1708
ApeKI GCWGC 3 cut(s) 193, 841, 1092
ApoI RAATTY 5 cut(s) 236, 472, 635, 883, 1141
Asp700I GAANNNNTTC 2 cut(s) 507, 860
AspS9I GGNCC 2 cut(s) 90, 1301
AsuC2I CCSGG 2 cut(s) 74, 422
AsuHPI GGTGA 4 cut(s) 606, 756, 789, 1358
AvaII GGWCC 1 cut(s) 1301
BalI TGGCCA 2 cut(s) 992, 1710
BarI GAAGNNNNNNTAC 2 cut(s) 1785, 1817
BbsI GAAGAC 1 cut(s) 973
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 3 cut(s) 205, 853, 1079
BccI CCATC 8 cut(s) 101, 140, 397, 401, 956, 1071, 1275, 1771
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 2 cut(s) 244, 618
BciVI GTATCC 1 cut(s) 1781
BcnI CCSGG 2 cut(s) 74, 422
BcoDI GTCTC 1 cut(s) 1645
BfaI CTAG 2 cut(s) 1337, 1574
BfmI CTRYAG 3 cut(s) 673, 839, 1616
BfuAI ACCTGC 1 cut(s) 253
BfuI GTATCC 1 cut(s) 1781
BisI GCNGC 4 cut(s) 17, 194, 842, 1093
BlsI GCNGC 4 cut(s) 18, 195, 843, 1094
BmcAI AGTACT 1 cut(s) 1418
Bme1390I CCNGG 4 cut(s) 74, 244, 422, 618
Bme18I GGWCC 1 cut(s) 1301
BmgT120I GGNCC 2 cut(s) 90, 1301
BmiI GGNNCC 1 cut(s) 1302
BmrFI CCNGG 4 cut(s) 74, 244, 422, 618
BmsI GCATC 5 cut(s) 49, 710, 997, 1264, 1594
BpiI GAAGAC 1 cut(s) 973
BpuEI CTTGAG 2 cut(s) 280, 349
BpuMI CCSGG 2 cut(s) 74, 422
BsaHI GRCGYC 1 cut(s) 1669
BsaJI CCNNGG 2 cut(s) 420, 993
Bsc4I CCNNNNNNNGG 4 cut(s) 319, 617, 1388, 1665
Bse1I ACTGG 4 cut(s) 441, 1495, 1593, 1799
Bse3DI GCAATG 2 cut(s) 972, 1683
BseBI CCWGG 2 cut(s) 244, 618
BseDI CCNNGG 2 cut(s) 420, 993
BseGI GGATG 8 cut(s) 132, 389, 563, 701, 1012, 1063, 1762, 1771
BseLI CCNNNNNNNGG 4 cut(s) 319, 617, 1388, 1665
BseMI GCAATG 2 cut(s) 972, 1683
BseMII CTCAG 2 cut(s) 665, 1674
BseNI ACTGG 4 cut(s) 441, 1495, 1593, 1799
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 3 cut(s) 205, 853, 1079
BsgI GTGCAG 1 cut(s) 1214
BshFI GGCC 6 cut(s) 19, 91, 312, 992, 1189, 1710
BsiHKAI GWGCWC 1 cut(s) 659
BsiSI CCGG 2 cut(s) 73, 422
BslFI GGGAC 5 cut(s) 11, 1286, 1314, 1574, 1656
BslI CCNNNNNNNGG 4 cut(s) 319, 617, 1388, 1665
BsmAI GTCTC 1 cut(s) 1645
BsmFI GGGAC 5 cut(s) 11, 1286, 1314, 1574, 1656
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 6 cut(s) 19, 91, 312, 992, 1189, 1710
Bsp1286I GDGCHC 1 cut(s) 659
Bsp143I GATC 4 cut(s) 876, 952, 1116, 1579
BspACI CCGC 3 cut(s) 16, 977, 1674
BspANI GGCC 6 cut(s) 19, 91, 312, 992, 1189, 1710
BspCNI CTCAG 2 cut(s) 664, 1673
BspHI TCATGA 2 cut(s) 879, 1422
BspLI GGNNCC 1 cut(s) 1302
BspMAI CTGCAG 2 cut(s) 843, 1620
BspMI ACCTGC 1 cut(s) 253
BspPI GGATC 1 cut(s) 1574
BspQI GCTCTTC 1 cut(s) 114
BsrDI GCAATG 2 cut(s) 972, 1683
BsrI ACTGG 4 cut(s) 441, 1495, 1593, 1799
BssECI CCNNGG 2 cut(s) 420, 993
BssMI GATC 4 cut(s) 876, 952, 1116, 1579
BssNI GRCGYC 1 cut(s) 1669
BssT1I CCWWGG 1 cut(s) 993
Bst2UI CCWGG 2 cut(s) 244, 618
Bst4CI ACNGT 3 cut(s) 551, 586, 625
Bst6I CTCTTC 2 cut(s) 114, 301
BstACI GRCGYC 1 cut(s) 1669
BstC8I GCNNGC 2 cut(s) 417, 1253
BstDEI CTNAG 6 cut(s) 651, 746, 1081, 1405, 1660, 1743
BstENI CCTNNNNNAGG 2 cut(s) 317, 615
BstF5I GGATG 8 cut(s) 132, 389, 563, 701, 1012, 1063, 1762, 1771
BstKTI GATC 4 cut(s) 879, 955, 1119, 1582
BstMAI GTCTC 1 cut(s) 1645
BstMBI GATC 4 cut(s) 876, 952, 1116, 1579
BstMWI GCNNNNNNNGC 3 cut(s) 88, 1186, 1574
BstNI CCWGG 2 cut(s) 244, 618
BstNSI RCATGY 2 cut(s) 419, 1058
BstSCI CCNGG 4 cut(s) 72, 242, 420, 616
BstSFI CTRYAG 3 cut(s) 673, 839, 1616
BstV1I GCAGC 3 cut(s) 205, 853, 1079
BstV2I GAAGAC 1 cut(s) 973
BsuI GTATCC 1 cut(s) 1781
BsuRI GGCC 6 cut(s) 19, 91, 312, 992, 1189, 1710
BtsCI GGATG 8 cut(s) 132, 389, 563, 701, 1012, 1063, 1762, 1771
BtsIMutI CAGTG 1 cut(s) 434
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 417, 1253
CaiI CAGNNNCTG 2 cut(s) 488, 623
CciI TCATGA 2 cut(s) 879, 1422
Cfr13I GGNCC 2 cut(s) 90, 1301
CseI GACGC 2 cut(s) 978, 1658
Csp6I GTAC 4 cut(s) 1392, 1402, 1417, 1802
CviQI GTAC 4 cut(s) 1392, 1402, 1417, 1802
DdeI CTNAG 6 cut(s) 651, 746, 1081, 1405, 1660, 1743
DpnI GATC 4 cut(s) 878, 954, 1118, 1581
DpnII GATC 4 cut(s) 876, 952, 1116, 1579
EaeI YGGCCR 2 cut(s) 990, 1708
Eam1104I CTCTTC 2 cut(s) 114, 301
EarI CTCTTC 2 cut(s) 114, 301
Eco130I CCWWGG 1 cut(s) 993
Eco147I AGGCCT 1 cut(s) 312
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 1301
Eco57I CTGAAG 3 cut(s) 6, 847, 1740
EcoNI CCTNNNNNAGG 2 cut(s) 317, 615
EcoRI GAATTC 1 cut(s) 883
EcoRII CCWGG 2 cut(s) 242, 616
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 1 cut(s) 993
ErhI CCWWGG 1 cut(s) 993
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 5 cut(s) 11, 1286, 1314, 1574, 1656
FauI CCCGC 1 cut(s) 1681
Fnu4HI GCNGC 4 cut(s) 17, 194, 842, 1093
FokI GGATG 8 cut(s) 119, 376, 550, 688, 1019, 1050, 1769, 1778
Fsp4HI GCNGC 4 cut(s) 17, 194, 842, 1093
FspBI CTAG 2 cut(s) 1337, 1574
GluI GCNGC 4 cut(s) 17, 194, 842, 1093
HaeIII GGCC 6 cut(s) 19, 91, 312, 992, 1189, 1710
HapII CCGG 2 cut(s) 73, 422
HgaI GACGC 2 cut(s) 978, 1658
Hin1I GRCGYC 1 cut(s) 1669
HpaII CCGG 2 cut(s) 73, 422
HphI GGTGA 4 cut(s) 606, 756, 789, 1358
Hpy166II GTNNAC 1 cut(s) 797
Hpy188III TCNNGA 5 cut(s) 366, 522, 880, 1271, 1423
Hpy8I GTNNAC 1 cut(s) 797
Hpy99I CGWCG 2 cut(s) 204, 532
HpyAV CCTTC 7 cut(s) 30, 518, 621, 858, 1304, 1535, 1586
HpyCH4III ACNGT 3 cut(s) 551, 586, 625
HpyCH4IV ACGT 1 cut(s) 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 1186, 1574
HpyF3I CTNAG 6 cut(s) 651, 746, 1081, 1405, 1660, 1743
HpySE526I ACGT 1 cut(s) 527
Hsp92I GRCGYC 1 cut(s) 1669
Kzo9I GATC 4 cut(s) 876, 952, 1116, 1579
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 1731
Lsp1109I GCAGC 3 cut(s) 205, 853, 1079
LweI GCATC 5 cut(s) 49, 710, 997, 1264, 1594
MaeI CTAG 2 cut(s) 1337, 1574
MaeII ACGT 1 cut(s) 527
MaeIII GTNAC 2 cut(s) 762, 1486
MalI GATC 4 cut(s) 878, 954, 1118, 1581
MboI GATC 4 cut(s) 876, 952, 1116, 1579
MfeI CAATTG 2 cut(s) 1383, 1642
MhlI GDGCHC 1 cut(s) 659
MlsI TGGCCA 2 cut(s) 992, 1710
MluNI TGGCCA 2 cut(s) 992, 1710
MlyI GAGTC 4 cut(s) 680, 1101, 1184, 1357
MmeI TCCRAC 3 cut(s) 283, 925, 1743
Mox20I TGGCCA 2 cut(s) 992, 1710
MroXI GAANNNNTTC 2 cut(s) 507, 860
MscI TGGCCA 2 cut(s) 992, 1710
MseI TTAA 2 cut(s) 455, 981
MslI CAYNNNNRTG 1 cut(s) 856
Msp20I TGGCCA 2 cut(s) 992, 1710
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 2 cut(s) 73, 422
MspR9I CCNGG 4 cut(s) 74, 244, 422, 618
MunI CAATTG 2 cut(s) 1383, 1642
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 2 cut(s) 244, 618
MwoI GCNNNNNNNGC 3 cut(s) 88, 1186, 1574
NciI CCSGG 2 cut(s) 74, 422
NdeII GATC 4 cut(s) 876, 952, 1116, 1579
NlaIV GGNNCC 1 cut(s) 1302
NmuCI GTSAC 1 cut(s) 762
NspI RCATGY 2 cut(s) 419, 1058
PaeI GCATGC 1 cut(s) 419
PagI TCATGA 2 cut(s) 879, 1422
PceI AGGCCT 1 cut(s) 312
PciI ACATGT 1 cut(s) 1054
PciSI GCTCTTC 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 1434
PctI GAATGC 1 cut(s) 18
PdmI GAANNNNTTC 2 cut(s) 507, 860
PfeI GAWTC 7 cut(s) 479, 485, 647, 774, 1508, 1553, 1738
PkrI GCNGC 4 cut(s) 18, 195, 843, 1094
PleI GAGTC 4 cut(s) 680, 1101, 1183, 1357
PpsI GAGTC 4 cut(s) 680, 1101, 1183, 1357
PscI ACATGT 1 cut(s) 1054
Psp6I CCWGG 2 cut(s) 242, 616
PspGI CCWGG 2 cut(s) 242, 616
PspN4I GGNNCC 1 cut(s) 1302
PspPI GGNCC 2 cut(s) 90, 1301
PsrI GAACNNNNNNTAC 2 cut(s) 828, 860
PstI CTGCAG 2 cut(s) 843, 1620
PstNI CAGNNNCTG 2 cut(s) 488, 623
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 4 cut(s) 1393, 1403, 1418, 1803
RsaNI GTAC 4 cut(s) 1392, 1402, 1417, 1802
RseI CAYNNNNRTG 1 cut(s) 856
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 2 cut(s) 455, 981
SatI GCNGC 4 cut(s) 17, 194, 842, 1093
Sau3AI GATC 4 cut(s) 876, 952, 1116, 1579
Sau96I GGNCC 2 cut(s) 90, 1301
ScaI AGTACT 1 cut(s) 1418
SchI GAGTC 4 cut(s) 680, 1101, 1184, 1357
ScrFI CCNGG 4 cut(s) 74, 244, 422, 618
SduI GDGCHC 1 cut(s) 659
SfaNI GCATC 5 cut(s) 49, 710, 997, 1264, 1594
SfcI CTRYAG 3 cut(s) 673, 839, 1616
SinI GGWCC 1 cut(s) 1301
SmiMI CAYNNNNRTG 1 cut(s) 856
SmlI CTYRAG 2 cut(s) 295, 364
SmoI CTYRAG 2 cut(s) 295, 364
SphI GCATGC 1 cut(s) 419
SseBI AGGCCT 1 cut(s) 312
SsiI CCGC 3 cut(s) 16, 977, 1674
SspI AATATT 1 cut(s) 404
SspMI CTAG 2 cut(s) 1337, 1574
StuI AGGCCT 1 cut(s) 312
StyD4I CCNGG 4 cut(s) 72, 242, 420, 616
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 3 cut(s) 551, 586, 625
TaiI ACGT 1 cut(s) 530
TaqI TCGA 7 cut(s) 202, 689, 922, 1122, 1258, 1437, 1775
TatI WGTACW 2 cut(s) 1416, 1801
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 7 cut(s) 479, 485, 647, 774, 1508, 1553, 1738
Tru1I TTAA 2 cut(s) 455, 981
Tru9I TTAA 2 cut(s) 455, 981
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 1 cut(s) 762
TseI GCWGC 3 cut(s) 193, 841, 1092
Tsp45I GTSAC 1 cut(s) 762
TspDTI ATGAA 9 cut(s) 648, 774, 840, 896, 1411, 1439, 1455, 1500, 1740
TspGWI ACGGA 2 cut(s) 1119, 1443
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 1301
XagI CCTNNNNNAGG 2 cut(s) 317, 615
XapI RAATTY 5 cut(s) 236, 472, 635, 883, 1141
XceI RCATGY 2 cut(s) 419, 1058
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmnI GAANNNNTTC 2 cut(s) 507, 860
XspI CTAG 2 cut(s) 1337, 1574
ZrmI AGTACT 1 cut(s) 1418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.