Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005134.1

Orthogroup ID

OG0018023

Physical Location & Seq

Genomic Coordinates Forward (+)

71492 .. 75379

Gene Structure 3888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005134.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

atgggatcctccttgagttgctgtggttcagagaaggttgatgaaggaggggctactgaaagtactggtggaggtcacacaacgtggagaatattttcgtacaaagagttgcatacagctacaaatggatttagcgatgacaatatgcttggagaaggaggatttggaagtgtgtattggggaaaaaccactgatggtctccagattgctgtcaagaagttgaaagcaatgaattcaaaagctgaaatggaatttgcagttgaagttgaagttcttgggagggttcggcacaaaaatttgttgggtcttaggggatattatgctggggctgatcaaaggcttatagtctatgattacatgccaaatctaagcctactttctcatttgcatggccaatttgctaatgaagttcagctagactggaaaaggagaatcaaaattgctattggctcagcagaaggcctcctgtacttgcaccatgaggtaacaccacacattattcacagagacataaaagcaagcaatgtgctcttggattccgacttcgaacctcttgttgcagatttcgggttcgccaagctaatcccggaaggtgtaagccatatgacgacgcgtgtcaagggcacattgggttacctagcaccggagtacgccatgtggggcaaggtctcggaagggtgtgacgtttacagctttggaattcttctcctagagcttgtaaccggaagaaagcctatcgagaagctccccggtggaattaagaggacaataactgaatgggccgagccactaataacaaaaggaaagtggaaagagcttgctgatccaaagctcagagggagcttcgacgaggctcagttgaagcaagctatcaatgttgctgctatgtgtgtgaaaagtgagcctgagaaaaggcctaatatgatggaagtggttgatcttttgaaagggtatgaggccaataaggccaaaacgacaccaatgaggattgaaagtatcagatataaggatgagctggtggcacttgaccaagctaccgatgatgatgaagatgggggtggtgatgaaagtaatggtgggtatggtgtctttagtgctattgaggtccagaaaatgaaggatccttatcagaagatccatggagataggagaatgaccaagtatgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

389

Amino Acids

43.14

Weight (kDa)

6.04

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018023)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08480
malus_domestica	MD16G1264800.v1.1
prunus_persica	Prupe.1G094300_v2.0.a1
pyrus_communis	pycom16g23410
rosa_chinensis	RchiOBHm_Chr4g0403901
rosa_laevigata	RLG00000008943
rosa_multiflora	Rmu_sc0005134.1_g000012
rosa_roxburghii	Rroxscaffold_5G00348480
rosa_rugosa	Rorug04G0046100
rosa_samantha	Rh4BG114800
rosa_wichuraiana	Rw4G009900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	613
AclWI	GGATC	5 cut(s)	13, 818, 1115, 1128, 1129
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	4 cut(s)	232, 251, 295, 699
AdeI	CACNNNGTG	1 cut(s)	84
AfaI	GTAC	4 cut(s)	64, 101, 470, 650
AfiI	CCNNNNNNNGG	1 cut(s)	643
AflIII	ACRYGT	1 cut(s)	611
AgsI	TTSAA	7 cut(s)	223, 237, 263, 269, 862, 946, 992
AjuI	GAANNNNNNNTTGG	4 cut(s)	147, 160, 179, 192
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	3 cut(s)	203, 501, 673
AlwI	GGATC	5 cut(s)	13, 818, 1115, 1128, 1129
AoxI	GGCC	6 cut(s)	391, 460, 780, 914, 957, 966
ApeKI	GCWGC	1 cut(s)	881
ApoI	RAATTY	4 cut(s)	232, 251, 295, 699
Asp700I	GAANNNNTTC	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	780, 1105
AsuC2I	CCSGG	2 cut(s)	587, 750
AsuHPI	GGTGA	1 cut(s)	1073
AsuII	TTCGAA	1 cut(s)	546
AvaII	GGWCC	1 cut(s)	1105
BaeGI	GKGCMC	1 cut(s)	626
BalI	TGGCCA	1 cut(s)	393
BamHI	GGATCC	2 cut(s)	5, 1120
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	868
BccI	CCATC	3 cut(s)	188, 919, 1046
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	2 cut(s)	587, 750
BcoDI	GTCTC	3 cut(s)	203, 501, 673
BfaI	CTAG	3 cut(s)	416, 638, 710
BglI	GCCNNNNNGGC	1 cut(s)	965
BisI	GCNGC	1 cut(s)	882
BlpI	GCTNAGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	883
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	587, 750
Bme18I	GGWCC	1 cut(s)	1105
BmgT120I	GGNCC	2 cut(s)	780, 1105
BmiI	GGNNCC	2 cut(s)	7, 1122
BmrFI	CCNGG	2 cut(s)	587, 750
BoxI	GACNNNNGTC	1 cut(s)	614
BpmI	CTGGAG	1 cut(s)	185
Bpu1102I	GCTNAGC	1 cut(s)	451
Bpu14I	TTCGAA	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	587, 750
BsaBI	GATNNNNATC	1 cut(s)	1125
BsaI	GGTCTC	2 cut(s)	203, 673
BsaJI	CCNNGG	2 cut(s)	748, 1138
BsaWI	WCCGGW	2 cut(s)	643, 722
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse1I	ACTGG	2 cut(s)	70, 425
Bse3DI	GCAATG	2 cut(s)	234, 529
Bse8I	GATNNNNATC	1 cut(s)	1125
BseDI	CCNNGG	2 cut(s)	748, 1138
BseGI	GGATG	1 cut(s)	1015
BseJI	GATNNNNATC	1 cut(s)	1125
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMI	GCAATG	2 cut(s)	234, 529
BseMII	CTCAG	4 cut(s)	465, 847, 869, 897
BseNI	ACTGG	2 cut(s)	70, 425
BseSI	GKGCMC	1 cut(s)	626
BseXI	GCAGC	1 cut(s)	868
BseYI	CCCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	613
BshFI	GGCC	6 cut(s)	393, 462, 782, 916, 959, 968
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	4 cut(s)	587, 644, 723, 750
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	3 cut(s)	203, 501, 673
BsnI	GGCC	6 cut(s)	393, 462, 782, 916, 959, 968
Bso31I	GGTCTC	2 cut(s)	203, 673
Bsp119I	TTCGAA	1 cut(s)	546
Bsp1286I	GDGCHC	2 cut(s)	531, 626
Bsp143I	GATC	6 cut(s)	5, 331, 823, 937, 1120, 1134
Bsp1720I	GCTNAGC	1 cut(s)	451
Bsp19I	CCATGG	1 cut(s)	1138
BspANI	GGCC	6 cut(s)	393, 462, 782, 916, 959, 968
BspCNI	CTCAG	4 cut(s)	464, 846, 868, 898
BspFNI	CGCG	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	7, 1122
BspPI	GGATC	5 cut(s)	13, 818, 1115, 1128, 1129
BspT104I	TTCGAA	1 cut(s)	546
BspTNI	GGTCTC	2 cut(s)	203, 673
BsrDI	GCAATG	2 cut(s)	234, 529
BsrI	ACTGG	2 cut(s)	70, 425
BssECI	CCNNGG	2 cut(s)	748, 1138
BssMI	GATC	6 cut(s)	5, 331, 823, 937, 1120, 1134
BssT1I	CCWWGG	1 cut(s)	1138
BstBI	TTCGAA	1 cut(s)	546
BstC8I	GCNNGC	3 cut(s)	520, 819, 867
BstDEI	CTNAG	6 cut(s)	308, 368, 451, 833, 855, 906
BstDSI	CCRYGG	1 cut(s)	1138
BstEII	GGTNACC	1 cut(s)	632
BstF5I	GGATG	1 cut(s)	1015
BstFNI	CGCG	1 cut(s)	613
BstKTI	GATC	6 cut(s)	8, 334, 826, 940, 1123, 1137
BstMAI	GTCTC	3 cut(s)	203, 501, 673
BstMBI	GATC	6 cut(s)	5, 331, 823, 937, 1120, 1134
BstMWI	GCNNNNNNNGC	1 cut(s)	965
BstNSI	RCATGY	1 cut(s)	361
BstPAI	GACNNNNGTC	1 cut(s)	614
BstPI	GGTNACC	1 cut(s)	632
BstSCI	CCNGG	2 cut(s)	585, 748
BstSLI	GKGCMC	1 cut(s)	626
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	1 cut(s)	868
BstX2I	RGATCY	3 cut(s)	5, 1120, 1134
BstYI	RGATCY	3 cut(s)	5, 1120, 1134
BsuRI	GGCC	6 cut(s)	393, 462, 782, 916, 959, 968
BtgI	CCRYGG	1 cut(s)	1138
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	1015
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	3 cut(s)	520, 819, 867
Cfr13I	GGNCC	2 cut(s)	780, 1105
CseI	GACGC	1 cut(s)	619
Csp6I	GTAC	4 cut(s)	63, 100, 469, 649
CviAII	CATG	5 cut(s)	358, 389, 479, 655, 1139
CviQI	GTAC	4 cut(s)	63, 100, 469, 649
DdeI	CTNAG	6 cut(s)	308, 368, 451, 833, 855, 906
DpnI	GATC	6 cut(s)	7, 333, 825, 939, 1122, 1136
DpnII	GATC	6 cut(s)	5, 331, 823, 937, 1120, 1134
DraIII	CACNNNGTG	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	1138
Eco147I	AGGCCT	2 cut(s)	462, 916
Eco31I	GGTCTC	2 cut(s)	203, 673
Eco47I	GGWCC	1 cut(s)	1105
Eco91I	GGTNACC	1 cut(s)	632
EcoO65I	GGTNACC	1 cut(s)	632
EcoRI	GAATTC	2 cut(s)	232, 699
EcoT14I	CCWWGG	1 cut(s)	1138
ErhI	CCWWGG	1 cut(s)	1138
FaeI	CATG	5 cut(s)	361, 392, 482, 658, 1142
FatI	CATG	5 cut(s)	357, 388, 478, 654, 1138
FauNDI	CATATG	1 cut(s)	603
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	882
FokI	GGATG	1 cut(s)	1022
Fsp4HI	GCNGC	1 cut(s)	882
FspBI	CTAG	3 cut(s)	416, 638, 710
GluI	GCNGC	1 cut(s)	882
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	6 cut(s)	393, 462, 782, 916, 959, 968
HapII	CCGG	4 cut(s)	587, 644, 723, 750
HgaI	GACGC	1 cut(s)	619
Hin1II	CATG	5 cut(s)	361, 392, 482, 658, 1142
HinfI	GANTC	2 cut(s)	432, 536
HpaII	CCGG	4 cut(s)	587, 644, 723, 750
HphI	GGTGA	1 cut(s)	1073
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	6 cut(s)	31, 541, 673, 836, 1001, 1131
Hpy188III	TCNNGA	4 cut(s)	202, 214, 739, 1108
Hpy8I	GTNNAC	1 cut(s)	688
Hpy99I	CGWCG	2 cut(s)	613, 851
HpyAV	CCTTC	7 cut(s)	28, 38, 149, 452, 584, 668, 1111
HpyCH4IV	ACGT	2 cut(s)	83, 684
HpyCH4V	TGCA	5 cut(s)	112, 257, 388, 475, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	965
HpyF3I	CTNAG	6 cut(s)	308, 368, 451, 833, 855, 906
HpySE526I	ACGT	2 cut(s)	83, 684
Hsp92II	CATG	5 cut(s)	361, 392, 482, 658, 1142
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	6 cut(s)	5, 331, 823, 937, 1120, 1134
LmnI	GCTCC	2 cut(s)	750, 840
Lsp1109I	GCAGC	1 cut(s)	868
MaeI	CTAG	3 cut(s)	416, 638, 710
MaeII	ACGT	2 cut(s)	83, 684
MaeIII	GTNAC	5 cut(s)	74, 484, 632, 680, 718
MalI	GATC	6 cut(s)	7, 333, 825, 939, 1122, 1136
MboI	GATC	6 cut(s)	5, 331, 823, 937, 1120, 1134
MboII	GAAGA	4 cut(s)	695, 738, 1061, 1144
MflI	RGATCY	3 cut(s)	5, 1120, 1134
MhlI	GDGCHC	2 cut(s)	531, 626
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	7 cut(s)	232, 251, 295, 395, 438, 699, 756
MluI	ACGCGT	1 cut(s)	611
MluNI	TGGCCA	1 cut(s)	393
MmeI	TCCRAC	1 cut(s)	564
Mox20I	TGGCCA	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	759
MslI	CAYNNNNRTG	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	4 cut(s)	587, 644, 723, 750
MspR9I	CCNGG	2 cut(s)	587, 750
MvnI	CGCG	1 cut(s)	613
MwoI	GCNNNNNNNGC	1 cut(s)	965
NciI	CCSGG	2 cut(s)	587, 750
NcoI	CCATGG	1 cut(s)	1138
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	6 cut(s)	5, 331, 823, 937, 1120, 1134
NlaIII	CATG	5 cut(s)	361, 392, 482, 658, 1142
NlaIV	GGNNCC	2 cut(s)	7, 1122
NmeAIII	GCCGAG	1 cut(s)	808
NmuCI	GTSAC	2 cut(s)	74, 680
NspI	RCATGY	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	546
PceI	AGGCCT	2 cut(s)	462, 916
PdmI	GAANNNNTTC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	432, 536
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	1 cut(s)	883
PshAI	GACNNNNGTC	1 cut(s)	614
PspEI	GGTNACC	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	7, 1122
PspPI	GGNCC	2 cut(s)	780, 1105
PsuI	RGATCY	3 cut(s)	5, 1120, 1134
RsaI	GTAC	4 cut(s)	64, 101, 470, 650
RsaNI	GTAC	4 cut(s)	63, 100, 469, 649
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	1 cut(s)	882
Sau3AI	GATC	6 cut(s)	5, 331, 823, 937, 1120, 1134
Sau96I	GGNCC	2 cut(s)	780, 1105
ScaI	AGTACT	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	587, 750
SduI	GDGCHC	2 cut(s)	531, 626
SfiI	GGCCNNNNNGGCC	1 cut(s)	965
SfuI	TTCGAA	1 cut(s)	546
SinI	GGWCC	1 cut(s)	1105
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	7 cut(s)	232, 251, 295, 395, 438, 699, 756
SseBI	AGGCCT	2 cut(s)	462, 916
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	3 cut(s)	416, 638, 710
StuI	AGGCCT	2 cut(s)	462, 916
StyD4I	CCNGG	2 cut(s)	585, 748
StyI	CCWWGG	1 cut(s)	1138
TaiI	ACGT	2 cut(s)	86, 687
TaqI	TCGA	3 cut(s)	546, 738, 846
TasI	AATT	7 cut(s)	232, 251, 295, 395, 438, 699, 756
TatI	WGTACW	2 cut(s)	62, 468
TfiI	GAWTC	2 cut(s)	432, 536
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	2 cut(s)	74, 680
TseI	GCWGC	1 cut(s)	881
Tsp45I	GTSAC	2 cut(s)	74, 680
TspDTI	ATGAA	6 cut(s)	57, 245, 420, 1062, 1080, 1130
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	1105
XapI	RAATTY	4 cut(s)	232, 251, 295, 699
XceI	RCATGY	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	94
XspI	CTAG	3 cut(s)	416, 638, 710
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.