Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006348

Physical Location & Seq

Genomic Coordinates Forward (+)

14322756 .. 14328072

Gene Structure 5317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10580.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCAGCAGGGGGACGCGACTACAAGCGAGAAGTTCAATTTGCTGATGTAATGTGTTCAGTTATGAATCCATTGAGCGATCCTCAAGTTTCCAATGACATAGCAGCTGATGGCGTTACTAGTAGCAACAGTTTTGGGACAGTATCCGGGAATGTTTATAGAATTGGAGGCTTGGTCTGGGAATTACCTGAGGGAAGCAAGATGGAGGATTACTTGCTTTTCTGGATCGGTTCCAATAACTCGGCCTTTGCAAATATTGTTTTAACATATAGTGGTTGTGAAATAGTCAGATATGATGCGTCAGAATGCAGTATGGTGACTGATCTGTCTCAACAAAGAAGAATTCTTAAGCGCAGATATTACCTAATGGAGAAGGCAAAGGATGCTAACATTGTTGCAATCTTAGTAGGAACCCTTGGTGTAGCTGGGTACTTGAATATGATTCACCAGATGAAAGAACTGATTACAGCAGCTGGGAAAAAAGTTTATACTCTAGTTATGGGAAGACCAAACCCTGCAAAACTTGCCAACTTCCCAGAGTGCGATATTTTCATTTATGTCTCTTGCGCCCAAACTGCTCTGCTGGATAGCAAAGAATATTTAGCTCCAGTAATCACTCCTTTTGAAGCCATGCTAGCTTTCAGCAGAGGATCTCAGTGGACCGGAGAATATGTAATGGAATTCCGTGATTTGAAAAATTCTTCTCCAGTGGAATCAAGAAACCAGTCTGAAGAAGCACGATTTTCCTTCATACAAGGTGGATATGTAGAAGGGTTTGATCGAGAAGGGAATGATGCCGAAGAAGACAAGGAAGGAGCTCTCGCTTTAGCAAATGTGACAGAGAAGGCTCTGCAATTGCGTGACGACCCTAACACCACAGCCAAGCGAACGGCTAAGTCTGGTGCAGAGTTTTTAGCAGCTCGATCCTATCAGGGTCTAGATATACATTATGACACTTCCTTGCCAGGACCATATCTAATGGGGAGGAAAGGGAGGGCAGCAGGGTATCAAGATGAAAAAAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Diphthamide_syn

Protein Analysis

343

Amino Acids

37.76

Weight (kDa)

5.08

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Diphthamide_syn	PF01866	30 - 370	4.8e-81	Putative diphthamide synthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59630 AT3G59630 AT3G59630
fragaria_vesca	FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580
malus_domestica	MD04G1048400.v1.1
prunus_persica	Prupe.1G080200_v2.0.a1
pyrus_communis	pycom04g04270
rosa_chinensis	RchiOBHm_Chr4g0406211
rosa_laevigata	RLG00000008789
rosa_multiflora	Rmu_sc0012210.1_g000001 Rmu_ssc0000456.1_g000017 Rmu_ssc0000456.1_g000024
rosa_roxburghii	Rroxscaffold_5G00350920
rosa_rugosa	Rorug04G0066000
rosa_samantha	Rh4AG136300 Rh4BG133700 Rh4CG144500 Rh4DG131200
rosa_wichuraiana	Rw4G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	325
AccII	CGCG	1 cut(s)	18
AclWI	GGATC	4 cut(s)	74, 233, 658, 918
AcsI	RAATTY	3 cut(s)	342, 680, 697
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	1 cut(s)	431
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	4 cut(s)	38, 436, 626, 694
AhlI	ACTAGT	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	964
AluBI	AGCT	7 cut(s)	107, 425, 473, 605, 638, 818, 920
AluI	AGCT	7 cut(s)	107, 425, 473, 605, 638, 818, 920
Alw21I	GWGCWC	1 cut(s)	820
Alw26I	GTCTC	2 cut(s)	333, 565
AlwI	GGATC	4 cut(s)	74, 233, 658, 918
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	5 cut(s)	5, 104, 470, 917, 998
ApoI	RAATTY	3 cut(s)	342, 680, 697
AspLEI	GCGC	2 cut(s)	354, 569
AspS9I	GGNCC	2 cut(s)	660, 968
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	328, 437
AsuNHI	GCTAGC	1 cut(s)	634
AvaII	GGWCC	2 cut(s)	660, 968
AxyI	CCTNAGG	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	820
BbsI	GAAGAC	2 cut(s)	511, 810
Bbv12I	GWGCWC	1 cut(s)	820
BbvI	GCAGC	5 cut(s)	17, 116, 482, 929, 1010
BccI	CCATC	2 cut(s)	104, 196
BceAI	ACGGC	1 cut(s)	906
BciT130I	CCWGG	1 cut(s)	966
BciVI	GTATCC	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	333, 565
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	4 cut(s)	120, 494, 635, 938
BfrI	CTTAAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	5 cut(s)	6, 105, 471, 918, 999
BlsI	GCNGC	5 cut(s)	7, 106, 472, 919, 1000
Bme1390I	CCNGG	2 cut(s)	148, 966
Bme18I	GGWCC	2 cut(s)	660, 968
BmgT120I	GGNCC	2 cut(s)	660, 968
BmiI	GGNNCC	2 cut(s)	232, 412
BmrFI	CCNGG	2 cut(s)	148, 966
BmsI	GCATC	3 cut(s)	286, 373, 784
BmtI	GCTAGC	1 cut(s)	638
BpiI	GAAGAC	2 cut(s)	511, 810
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
BpmI	CTGGAG	2 cut(s)	591, 690
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	415
BsaWI	WCCGGW	1 cut(s)	662
BsaXI	ACNNNNNCTCC	4 cut(s)	159, 189, 657, 687
Bse1I	ACTGG	3 cut(s)	608, 707, 724
Bse21I	CCTNAGG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	966
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	1 cut(s)	388
BseMII	CTCAG	2 cut(s)	180, 668
BseNI	ACTGG	3 cut(s)	608, 707, 724
BseXI	GCAGC	5 cut(s)	17, 116, 482, 929, 1010
BseYI	CCCAGC	2 cut(s)	425, 473
BsgI	GTGCAG	1 cut(s)	924
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	820
BsiSI	CCGG	2 cut(s)	147, 663
BslFI	GGGAC	2 cut(s)	27, 151
BsmAI	GTCTC	2 cut(s)	333, 565
BsmFI	GGGAC	2 cut(s)	27, 151
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp143I	GATC	6 cut(s)	79, 225, 322, 650, 778, 923
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	2 cut(s)	181, 667
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	232, 412
BspOI	GCTAGC	1 cut(s)	638
BspPI	GGATC	4 cut(s)	74, 233, 658, 918
BspTI	CTTAAG	1 cut(s)	347
BsrI	ACTGG	3 cut(s)	608, 707, 724
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	6 cut(s)	79, 225, 322, 650, 778, 923
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	966
Bst4CI	ACNGT	2 cut(s)	131, 142
BstAFI	CTTAAG	1 cut(s)	347
BstAPI	GCANNNNNTGC	2 cut(s)	383, 524
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	4 cut(s)	189, 403, 654, 894
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	354, 569
BstKTI	GATC	6 cut(s)	82, 228, 325, 653, 781, 926
BstMAI	GTCTC	2 cut(s)	333, 565
BstMBI	GATC	6 cut(s)	79, 225, 322, 650, 778, 923
BstMWI	GCNNNNNNNGC	4 cut(s)	383, 524, 575, 635
BstNI	CCWGG	1 cut(s)	966
BstNSI	RCATGY	1 cut(s)	1027
BstSCI	CCNGG	2 cut(s)	146, 964
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	5 cut(s)	17, 116, 482, 929, 1010
BstV2I	GAAGAC	2 cut(s)	511, 810
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
Bsu36I	CCTNAGG	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	662, 714
Cac8I	GCNNGC	1 cut(s)	636
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	2 cut(s)	354, 569
Cfr13I	GGNCC	2 cut(s)	660, 968
CseI	GACGC	2 cut(s)	24, 288
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	2 cut(s)	631, 1024
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	4 cut(s)	189, 403, 654, 894
DpnI	GATC	6 cut(s)	81, 227, 324, 652, 780, 925
DpnII	GATC	6 cut(s)	79, 225, 322, 650, 778, 923
DrdI	GACNNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	818
Eco130I	CCWWGG	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	820
Eco47I	GGWCC	2 cut(s)	660, 968
Eco53kI	GAGCTC	1 cut(s)	818
Eco57I	CTGAAG	1 cut(s)	750
Eco81I	CCTNAGG	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	818
EcoRI	GAATTC	2 cut(s)	342, 680
EcoRII	CCWGG	1 cut(s)	964
EcoT14I	CCWWGG	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	820
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	2 cut(s)	634, 1027
FaqI	GGGAC	2 cut(s)	27, 151
FatI	CATG	2 cut(s)	630, 1023
Fnu4HI	GCNGC	5 cut(s)	6, 105, 471, 918, 999
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	820
Fsp4HI	GCNGC	5 cut(s)	6, 105, 471, 918, 999
FspBI	CTAG	4 cut(s)	120, 494, 635, 938
GlaI	GCGC	2 cut(s)	353, 568
GluI	GCNGC	5 cut(s)	6, 105, 471, 918, 999
GsaI	CCCAGC	2 cut(s)	429, 477
GsuI	CTGGAG	2 cut(s)	591, 690
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	2 cut(s)	147, 663
HgaI	GACGC	2 cut(s)	24, 288
HhaI	GCGC	2 cut(s)	354, 569
Hin1II	CATG	2 cut(s)	634, 1027
Hin6I	GCGC	2 cut(s)	352, 567
HinP1I	GCGC	2 cut(s)	352, 567
HinfI	GANTC	3 cut(s)	67, 442, 713
HpaII	CCGG	2 cut(s)	147, 663
HphI	GGTGA	2 cut(s)	328, 437
Hpy166II	GTNNAC	1 cut(s)	660
Hpy188I	TCNGA	3 cut(s)	290, 304, 730
Hpy188III	TCNNGA	5 cut(s)	223, 717, 782, 938, 1010
Hpy8I	GTNNAC	1 cut(s)	660
HpyAV	CCTTC	6 cut(s)	367, 757, 764, 779, 806, 838
HpyCH4III	ACNGT	2 cut(s)	131, 142
HpyCH4V	TGCA	6 cut(s)	251, 309, 398, 518, 853, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	383, 524, 575, 635
HpyF3I	CTNAG	4 cut(s)	189, 403, 654, 894
Hsp92II	CATG	2 cut(s)	634, 1027
HspAI	GCGC	2 cut(s)	352, 567
Kzo9I	GATC	6 cut(s)	79, 225, 322, 650, 778, 923
LmnI	GCTCC	2 cut(s)	610, 815
Lsp1109I	GCAGC	5 cut(s)	17, 116, 482, 929, 1010
LweI	GCATC	3 cut(s)	286, 373, 784
MaeI	CTAG	4 cut(s)	120, 494, 635, 938
MaeIII	GTNAC	4 cut(s)	115, 316, 835, 860
MalI	GATC	6 cut(s)	81, 227, 324, 652, 780, 925
MboI	GATC	6 cut(s)	79, 225, 322, 650, 778, 923
MboII	GAAGA	6 cut(s)	351, 516, 693, 743, 812, 815
MfeI	CAATTG	1 cut(s)	854
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	1 cut(s)	820
MluCI	AATT	7 cut(s)	38, 162, 182, 342, 680, 697, 854
MnlI	CCTC	7 cut(s)	93, 161, 184, 199, 641, 978, 987
MseI	TTAA	2 cut(s)	263, 348
MspA1I	CMGCKG	2 cut(s)	107, 473
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	2 cut(s)	147, 663
MspR9I	CCNGG	2 cut(s)	148, 966
MunI	CAATTG	1 cut(s)	854
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	966
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	4 cut(s)	383, 524, 575, 635
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	6 cut(s)	79, 225, 322, 650, 778, 923
NheI	GCTAGC	1 cut(s)	634
NlaIII	CATG	2 cut(s)	634, 1027
NlaIV	GGNNCC	2 cut(s)	232, 412
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	3 cut(s)	316, 835, 860
NspI	RCATGY	1 cut(s)	1027
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	67, 442, 713
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	5 cut(s)	7, 106, 472, 919, 1000
Psp124BI	GAGCTC	1 cut(s)	820
Psp6I	CCWGG	1 cut(s)	964
PspFI	CCCAGC	2 cut(s)	425, 473
PspGI	CCWGG	1 cut(s)	964
PspN4I	GGNNCC	2 cut(s)	232, 412
PspPI	GGNCC	2 cut(s)	660, 968
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	650
PvuII	CAGCTG	2 cut(s)	107, 473
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SacI	GAGCTC	1 cut(s)	820
SaqAI	TTAA	2 cut(s)	263, 348
SatI	GCNGC	5 cut(s)	6, 105, 471, 918, 999
Sau3AI	GATC	6 cut(s)	79, 225, 322, 650, 778, 923
Sau96I	GGNCC	2 cut(s)	660, 968
ScrFI	CCNGG	2 cut(s)	148, 966
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	3 cut(s)	286, 373, 784
SinI	GGWCC	2 cut(s)	660, 968
SmlI	CTYRAG	2 cut(s)	84, 347
SmoI	CTYRAG	2 cut(s)	84, 347
SpeI	ACTAGT	1 cut(s)	119
Sse9I	AATT	7 cut(s)	38, 162, 182, 342, 680, 697, 854
SspI	AATATT	2 cut(s)	256, 599
SspMI	CTAG	4 cut(s)	120, 494, 635, 938
SstI	GAGCTC	1 cut(s)	820
StyD4I	CCNGG	2 cut(s)	146, 964
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	131, 142
TaqI	TCGA	2 cut(s)	781, 922
TasI	AATT	7 cut(s)	38, 162, 182, 342, 680, 697, 854
TfiI	GAWTC	3 cut(s)	67, 442, 713
Tru1I	TTAA	2 cut(s)	263, 348
Tru9I	TTAA	2 cut(s)	263, 348
TscAI	CASTG	2 cut(s)	662, 714
TseFI	GTSAC	3 cut(s)	316, 835, 860
TseI	GCWGC	5 cut(s)	5, 104, 470, 917, 998
Tsp45I	GTSAC	3 cut(s)	316, 835, 860
TspDTI	ATGAA	5 cut(s)	80, 467, 541, 739, 1029
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	2 cut(s)	662, 714
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	660, 968
XapI	RAATTY	3 cut(s)	342, 680, 697
XbaI	TCTAGA	1 cut(s)	937
XceI	RCATGY	1 cut(s)	1027
XspI	CTAG	4 cut(s)	120, 494, 635, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.