pycom04g04270

Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
3811594 .. 3815538
3945 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04270.7

Sequence Viewer

Length: 1515 bp
ATGGAGTTTGAATCAAATTACGAAATTGCTCCTACCGCCGACTTCATTCACACTAACAACTTCACCAGAGTTGCTTTACAGTTCCCGGATGAGCTTCTGAAGGACTCTGTGAGAGTGGTGAGTGCTCTGAGGGCCAAGCTGCGTTCACTAAGAAAACCCAGCGCCGACCTAACCGACGACGTCCCGGAGGTGTCCTTGTTCGTGATGGCGGACACGGCCTACGGTAGTTGCTGTGTGGACGAGGTGGGAGCGTCGCACGTCGATGCTGATTGTGTTGTTCATTACGGCCACACCTGCCTTAGCCCGACAACGACGCTTCCAGCTTTCTTTGTTTTCGGGAAGGTTCCCATCAGTGTGCCTGATTGTGTAAACAATCTATCACATTATGCTCTCGAAAATCGGAGGCGTGTTTTGGTCCTTTTTGGGCTGGAATATGCACATTCGATTCAGCATATAAAAGAAGAATTTGTACAAGCATGTGGGGTTGGGTCCGAACTAGAAGTTCAATATGCTAATGTTATGTGTTCAGTTATGAATCCATCAAAAGATCGTAAACTCTCAAATGAGCTCCCAGGACCAGCTGGCAGCCTCACTAATGATACCAGTTCTGGGACAACGTCTAGTGTTACTTATAGCATTGGAGGCTTGGTCTGGAAATTACCTGAGGGATGCAAGATGGAGGATTATTTACTTTTCTGGATTGGTTCAAATAACTCCGCCTTTGCAAATATTGTTTTAACATATAATGGATGTGAAATAGTCAGATATGATGCCTCGGAATGCAGTATGGTGACTGACTTATCTCAACAAAGAAGGATTCTTAAGCGCAGATATTACCTAATGGAGAAAGCAAAGGATGCTAACATTGTGGGGATCTTAGTAGGAACCCTTGGTGTAGCTGGTTACCTGAACATGATTCATCAGATGAAAGAGCTGATTACAGGAGCAGGAAAAAAAGTTTATACCCTAGTTATGGGGAGACCAAACCCTGCAAAACTTGCAAACTTTCCAGAGTGTGATGTTTTCATTTATGTCTCTTGCGCTCAAACTGCTCTTCTGGATAGCAAAGAATATTTAGCTCCAGTAATTACTCCTTTTGAAGCCATGGTAGCCTTCAACAGAGGATGTGAGTGGACTGGAGCATATGTAATGGAATTCCGCGATTTGGTTAGTTCTTCTCCAGTGGATATAAGGATCCAGTCTGAGGAAGCACGATTTTCCTTCATACAAGGTGGTTATGTAGAAGATTTCCAGCTGCAAGGTAATGGCACTGAGGAAGACAAGGAAGGAGCTCTTGCTTTAGCAAATGCGACAGAGAAGGCTCTGCAATTGCGCGACAACCCTAGTTCTGTAGTGAAAGGAACAGCTAAATCGGGTGCAGAGTTTTTAGCTACTCGATCATATCAGGGTCTAGATATACATTACGAGACTTCCTTTCCCGAACCATATTTTATTGGGAGGAGTGGGAGGGCAGCAGGTTATAAAGATGAGAAGAACGGGGAAGAGAAATTGTGA

Protein Analysis

505

Amino Acids

55.58

Weight (kDa)

5.15

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1482
AarI CACCTGC 1 cut(s) 302
AatII GACGTC 1 cut(s) 183
Acc36I ACCTGC 2 cut(s) 302, 1466
AccII CGCG 2 cut(s) 1161, 1335
AciI CCGC 4 cut(s) 36, 209, 717, 1159
AclWI GGATC 3 cut(s) 881, 1189, 1202
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 2 cut(s) 464, 1154
AcuI CTGAAG 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 1 cut(s) 471
AfiI CCNNNNNNNGG 4 cut(s) 609, 973, 1165, 1204
AflII CTTAAG 1 cut(s) 821
AgsI TTSAA 5 cut(s) 11, 506, 708, 1100, 1117
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 571
Alw21I GWGCWC 3 cut(s) 127, 570, 1294
Alw26I GTCTC 3 cut(s) 973, 1039, 1421
AlwI GGATC 3 cut(s) 881, 1189, 1202
AoxI GGCC 3 cut(s) 132, 216, 286
ApeKI GCWGC 4 cut(s) 139, 585, 1255, 1472
ApoI RAATTY 2 cut(s) 464, 1154
AspLEI GCGC 4 cut(s) 164, 828, 1043, 1335
AspS9I GGNCC 4 cut(s) 132, 415, 489, 575
AsuC2I CCSGG 2 cut(s) 86, 185
AsuHPI GGTGA 3 cut(s) 55, 130, 802
AvaII GGWCC 3 cut(s) 415, 489, 575
AxyI CCTNAGG 1 cut(s) 663
BamHI GGATCC 1 cut(s) 1194
BanII GRGCYC 2 cut(s) 570, 1294
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
BbsI GAAGAC 1 cut(s) 1284
Bbv12I GWGCWC 3 cut(s) 127, 570, 1294
BbvI GCAGC 4 cut(s) 126, 597, 1242, 1484
BccI CCATC 4 cut(s) 199, 356, 547, 670
BceAI ACGGC 2 cut(s) 231, 301
BciT130I CCWGG 1 cut(s) 573
BcnI CCSGG 2 cut(s) 86, 185
BcoDI GTCTC 3 cut(s) 973, 1039, 1421
BfaI CTAG 5 cut(s) 497, 621, 968, 1344, 1412
BfmI CTRYAG 1 cut(s) 1350
BfoI RGCGCY 1 cut(s) 165
BfrI CTTAAG 1 cut(s) 821
BfuAI ACCTGC 2 cut(s) 302, 1466
BisI GCNGC 4 cut(s) 140, 586, 1256, 1473
BlsI GCNGC 4 cut(s) 141, 587, 1257, 1474
Bme1390I CCNGG 3 cut(s) 86, 185, 573
Bme18I GGWCC 3 cut(s) 415, 489, 575
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 4 cut(s) 132, 415, 489, 575
BmiI GGNNCC 4 cut(s) 345, 490, 886, 1196
BmrFI CCNGG 3 cut(s) 86, 185, 573
BmsI GCATC 4 cut(s) 253, 659, 760, 847
BpiI GAAGAC 1 cut(s) 1284
BpmI CTGGAG 3 cut(s) 1065, 1158, 1164
Bpu10I CCTNAGC 1 cut(s) 299
BpuMI CCSGG 2 cut(s) 86, 185
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 973
BsaJI CCNNGG 4 cut(s) 571, 774, 889, 1104
BsaXI ACNNNNNCTCC 4 cut(s) 633, 663, 1131, 1161
Bsc4I CCNNNNNNNGG 4 cut(s) 609, 973, 1165, 1204
Bse1I ACTGG 5 cut(s) 603, 1082, 1141, 1181, 1198
Bse21I CCTNAGG 1 cut(s) 663
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 4 cut(s) 571, 774, 889, 1104
BseGI GGATG 5 cut(s) 94, 674, 755, 862, 1130
BseLI CCNNNNNNNGG 4 cut(s) 609, 973, 1165, 1204
BseMII CTCAG 4 cut(s) 119, 654, 1194, 1263
BseNI ACTGG 5 cut(s) 603, 1082, 1141, 1181, 1198
BseRI GAGGAG 1 cut(s) 1474
BseXI GCAGC 4 cut(s) 126, 597, 1242, 1484
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 1398
Bsh1236I CGCG 2 cut(s) 1161, 1335
BshFI GGCC 3 cut(s) 134, 218, 288
BsiHKAI GWGCWC 3 cut(s) 127, 570, 1294
BsiSI CCGG 2 cut(s) 86, 185
BslFI GGGAC 2 cut(s) 167, 625
BslI CCNNNNNNNGG 4 cut(s) 609, 973, 1165, 1204
BsmAI GTCTC 3 cut(s) 973, 1039, 1421
BsmFI GGGAC 2 cut(s) 167, 625
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 3 cut(s) 134, 218, 288
Bso31I GGTCTC 1 cut(s) 973
Bsp1286I GDGCHC 3 cut(s) 127, 570, 1294
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 4 cut(s) 547, 873, 1194, 1397
Bsp19I CCATGG 1 cut(s) 1104
BspACI CCGC 4 cut(s) 36, 209, 717, 1159
BspANI GGCC 3 cut(s) 134, 218, 288
BspCNI CTCAG 4 cut(s) 120, 655, 1195, 1264
BspFNI CGCG 2 cut(s) 1161, 1335
BspLI GGNNCC 4 cut(s) 345, 490, 886, 1196
BspMI ACCTGC 2 cut(s) 302, 1466
BspPI GGATC 3 cut(s) 881, 1189, 1202
BspQI GCTCTTC 1 cut(s) 1059
BspTI CTTAAG 1 cut(s) 821
BspTNI GGTCTC 1 cut(s) 973
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 5 cut(s) 603, 1082, 1141, 1181, 1198
BssECI CCNNGG 4 cut(s) 571, 774, 889, 1104
BssMI GATC 4 cut(s) 547, 873, 1194, 1397
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 889, 1104
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 2 cut(s) 81, 224
Bst6I CTCTTC 2 cut(s) 1059, 1497
BstACI GRCGYC 1 cut(s) 180
BstAFI CTTAAG 1 cut(s) 821
BstAPI GCANNNNNTGC 2 cut(s) 857, 998
BstAUI TGTACA 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 7 cut(s) 128, 149, 299, 663, 877, 1203, 1272
BstDSI CCRYGG 1 cut(s) 1104
BstEII GGTNACC 1 cut(s) 902
BstF5I GGATG 5 cut(s) 94, 674, 755, 862, 1130
BstFNI CGCG 2 cut(s) 1161, 1335
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 4 cut(s) 164, 828, 1043, 1335
BstKTI GATC 4 cut(s) 550, 876, 1197, 1400
BstMAI GTCTC 3 cut(s) 973, 1039, 1421
BstMBI GATC 4 cut(s) 547, 873, 1194, 1397
BstMWI GCNNNNNNNGC 9 cut(s) 35, 131, 215, 294, 642, 857, 998, 1049, 1109
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 1 cut(s) 480
BstPI GGTNACC 1 cut(s) 902
BstSCI CCNGG 3 cut(s) 84, 183, 571
BstSFI CTRYAG 1 cut(s) 1350
BstUI CGCG 2 cut(s) 1161, 1335
BstV1I GCAGC 4 cut(s) 126, 597, 1242, 1484
BstV2I GAAGAC 1 cut(s) 1284
BstX2I RGATCY 2 cut(s) 873, 1194
BstYI RGATCY 2 cut(s) 873, 1194
Bsu36I CCTNAGG 1 cut(s) 663
BsuRI GGCC 3 cut(s) 134, 218, 288
BtgI CCRYGG 1 cut(s) 1104
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 5 cut(s) 94, 674, 755, 862, 1130
BtsIMutI CAGTG 3 cut(s) 358, 1188, 1269
BveI ACCTGC 2 cut(s) 302, 1466
Cac8I GCNNGC 1 cut(s) 583
CfoI GCGC 4 cut(s) 164, 828, 1043, 1335
Cfr13I GGNCC 4 cut(s) 132, 415, 489, 575
CseI GACGC 2 cut(s) 240, 322
Csp6I GTAC 1 cut(s) 470
CviAII CATG 3 cut(s) 477, 913, 1105
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 7 cut(s) 128, 149, 299, 663, 877, 1203, 1272
DpnI GATC 4 cut(s) 549, 875, 1196, 1399
DpnII GATC 4 cut(s) 547, 873, 1194, 1397
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 1059, 1497
EarI CTCTTC 2 cut(s) 1059, 1497
EciI GGCGGA 2 cut(s) 224, 706
Ecl136II GAGCTC 2 cut(s) 568, 1292
Eco130I CCWWGG 2 cut(s) 889, 1104
Eco24I GRGCYC 2 cut(s) 570, 1294
Eco31I GGTCTC 1 cut(s) 973
Eco47I GGWCC 3 cut(s) 415, 489, 575
Eco53kI GAGCTC 2 cut(s) 568, 1292
Eco57I CTGAAG 1 cut(s) 119
Eco81I CCTNAGG 1 cut(s) 663
Eco91I GGTNACC 1 cut(s) 902
EcoICRI GAGCTC 2 cut(s) 568, 1292
EcoO65I GGTNACC 1 cut(s) 902
EcoRI GAATTC 1 cut(s) 1154
EcoRII CCWGG 1 cut(s) 571
EcoT14I CCWWGG 2 cut(s) 889, 1104
EcoT38I GRGCYC 2 cut(s) 570, 1294
ErhI CCWWGG 2 cut(s) 889, 1104
FaeI CATG 3 cut(s) 480, 916, 1108
FalI AAGNNNNNCTT 2 cut(s) 1278, 1310
FaqI GGGAC 2 cut(s) 167, 625
FatI CATG 3 cut(s) 476, 912, 1104
FauNDI CATATG 1 cut(s) 1144
Fnu4HI GCNGC 4 cut(s) 140, 586, 1256, 1473
FokI GGATG 5 cut(s) 101, 681, 762, 869, 1137
FriOI GRGCYC 2 cut(s) 570, 1294
Fsp4HI GCNGC 4 cut(s) 140, 586, 1256, 1473
FspBI CTAG 5 cut(s) 497, 621, 968, 1344, 1412
GlaI GCGC 4 cut(s) 163, 827, 1042, 1334
GluI GCNGC 4 cut(s) 140, 586, 1256, 1473
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 3 cut(s) 1065, 1158, 1164
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 3 cut(s) 134, 218, 288
HapII CCGG 2 cut(s) 86, 185
HgaI GACGC 2 cut(s) 240, 322
HhaI GCGC 4 cut(s) 164, 828, 1043, 1335
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 3 cut(s) 480, 916, 1108
Hin6I GCGC 4 cut(s) 162, 826, 1041, 1333
HinP1I GCGC 4 cut(s) 162, 826, 1041, 1333
HinfI GANTC 6 cut(s) 11, 104, 445, 535, 817, 916
HpaII CCGG 2 cut(s) 86, 185
HphI GGTGA 3 cut(s) 55, 130, 802
Hpy166II GTNNAC 5 cut(s) 146, 238, 370, 554, 1134
Hpy188I TCNGA 8 cut(s) 99, 129, 402, 493, 764, 778, 924, 1204
Hpy188III TCNNGA 9 cut(s) 202, 337, 392, 652, 697, 1010, 1058, 1412, 1439
Hpy8I GTNNAC 5 cut(s) 146, 238, 370, 554, 1134
Hpy99I CGWCG 5 cut(s) 179, 182, 256, 263, 316
HpyAV CCTTC 7 cut(s) 94, 334, 807, 1123, 1231, 1280, 1312
HpyCH4III ACNGT 2 cut(s) 81, 224
HpyCH4IV ACGT 3 cut(s) 180, 258, 617
HpyCH4V TGCA 9 cut(s) 437, 672, 725, 783, 992, 1001, 1258, 1327, 1379
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 131, 215, 294, 642, 857, 998, 1049, 1109
HpyF3I CTNAG 7 cut(s) 128, 149, 299, 663, 877, 1203, 1272
HpySE526I ACGT 3 cut(s) 180, 258, 617
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 3 cut(s) 480, 916, 1108
HspAI GCGC 4 cut(s) 162, 826, 1041, 1333
Kzo9I GATC 4 cut(s) 547, 873, 1194, 1397
LguI GCTCTTC 1 cut(s) 1059
LmnI GCTCC 7 cut(s) 34, 248, 573, 944, 1084, 1139, 1289
Lsp1109I GCAGC 4 cut(s) 126, 597, 1242, 1484
LweI GCATC 4 cut(s) 253, 659, 760, 847
MaeI CTAG 5 cut(s) 497, 621, 968, 1344, 1412
MaeII ACGT 3 cut(s) 180, 258, 617
MaeIII GTNAC 3 cut(s) 625, 790, 902
MalI GATC 4 cut(s) 549, 875, 1196, 1399
MboI GATC 4 cut(s) 547, 873, 1194, 1397
MboII GAAGA 7 cut(s) 473, 1046, 1167, 1256, 1289, 1504, 1514
MfeI CAATTG 1 cut(s) 1328
MflI RGATCY 2 cut(s) 873, 1194
MhlI GDGCHC 3 cut(s) 127, 570, 1294
MluCI AATT 8 cut(s) 16, 24, 464, 656, 1086, 1154, 1328, 1508
MlyI GAGTC 1 cut(s) 98
MseI TTAA 2 cut(s) 737, 822
MslI CAYNNNNRTG 2 cut(s) 261, 353
MspA1I CMGCKG 2 cut(s) 581, 1255
MspCI CTTAAG 1 cut(s) 821
MspI CCGG 2 cut(s) 86, 185
MspR9I CCNGG 3 cut(s) 86, 185, 573
MunI CAATTG 1 cut(s) 1328
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 2 cut(s) 1161, 1335
MwoI GCNNNNNNNGC 9 cut(s) 35, 131, 215, 294, 642, 857, 998, 1049, 1109
NciI CCSGG 2 cut(s) 86, 185
NcoI CCATGG 1 cut(s) 1104
NdeI CATATG 1 cut(s) 1144
NdeII GATC 4 cut(s) 547, 873, 1194, 1397
NlaIII CATG 3 cut(s) 480, 916, 1108
NlaIV GGNNCC 4 cut(s) 345, 490, 886, 1196
NmuCI GTSAC 1 cut(s) 790
NspI RCATGY 1 cut(s) 480
PaqCI CACCTGC 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 1059
PctI GAATGC 1 cut(s) 785
PfeI GAWTC 5 cut(s) 11, 445, 535, 817, 916
PflFI GACNNNGTC 2 cut(s) 179, 616
PfoI TCCNGGA 2 cut(s) 84, 183
PkrI GCNGC 4 cut(s) 141, 587, 1257, 1474
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PsiI TTATAA 1 cut(s) 1482
Psp124BI GAGCTC 2 cut(s) 570, 1294
Psp6I CCWGG 1 cut(s) 571
PspEI GGTNACC 1 cut(s) 902
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 4 cut(s) 345, 490, 886, 1196
PspPI GGNCC 4 cut(s) 132, 415, 489, 575
PsuI RGATCY 2 cut(s) 873, 1194
PsyI GACNNNGTC 2 cut(s) 179, 616
PvuII CAGCTG 2 cut(s) 581, 1255
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
RseI CAYNNNNRTG 2 cut(s) 261, 353
SacI GAGCTC 2 cut(s) 570, 1294
SapI GCTCTTC 1 cut(s) 1059
SaqAI TTAA 2 cut(s) 737, 822
SatI GCNGC 4 cut(s) 140, 586, 1256, 1473
Sau3AI GATC 4 cut(s) 547, 873, 1194, 1397
Sau96I GGNCC 4 cut(s) 132, 415, 489, 575
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 86, 185, 573
SduI GDGCHC 3 cut(s) 127, 570, 1294
SfaNI GCATC 4 cut(s) 253, 659, 760, 847
SfcI CTRYAG 1 cut(s) 1350
SinI GGWCC 3 cut(s) 415, 489, 575
SmiMI CAYNNNNRTG 2 cut(s) 261, 353
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 8 cut(s) 16, 24, 464, 656, 1086, 1154, 1328, 1508
SsiI CCGC 4 cut(s) 36, 209, 717, 1159
SspI AATATT 2 cut(s) 730, 1073
SspMI CTAG 5 cut(s) 497, 621, 968, 1344, 1412
SstI GAGCTC 2 cut(s) 570, 1294
StyD4I CCNGG 3 cut(s) 84, 183, 571
StyI CCWWGG 2 cut(s) 889, 1104
TaaI ACNGT 2 cut(s) 81, 224
TaiI ACGT 3 cut(s) 183, 261, 620
TaqI TCGA 4 cut(s) 261, 393, 443, 1396
TasI AATT 8 cut(s) 16, 24, 464, 656, 1086, 1154, 1328, 1508
TatI WGTACW 1 cut(s) 469
TfiI GAWTC 5 cut(s) 11, 445, 535, 817, 916
Tru1I TTAA 2 cut(s) 737, 822
Tru9I TTAA 2 cut(s) 737, 822
TscAI CASTG 3 cut(s) 358, 1188, 1276
TseFI GTSAC 1 cut(s) 790
TseI GCWGC 4 cut(s) 139, 585, 1255, 1472
Tsp45I GTSAC 1 cut(s) 790
TspDTI ATGAA 7 cut(s) 34, 269, 548, 908, 941, 1015, 1213
TspRI CASTG 3 cut(s) 358, 1188, 1276
Tth111I GACNNNGTC 2 cut(s) 179, 616
Vha464I CTTAAG 1 cut(s) 821
VpaK11BI GGWCC 3 cut(s) 415, 489, 575
XapI RAATTY 2 cut(s) 464, 1154
XbaI TCTAGA 1 cut(s) 1411
XceI RCATGY 1 cut(s) 480
XspI CTAG 5 cut(s) 497, 621, 968, 1344, 1412
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.