Prupe.1G080200_v2.0.a1

Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
5865285 .. 5871947
6663 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G080200.1

Sequence Viewer

Length: 1515 bp
ATGGACTTGGAATCGAATTACGAAATCGCCCCCACGGCCGAGTTCATTCAGAGCAACAAGTTCACCAGAGTCGCTTTACAGTTCCCTGATGAACTTCTGAAGGACGCGGTGAGAGTTGTGAGTGCGCTAAGGGCCAAGCTTCGAACACTGAGGGAATCCAACGCCGAGCAAAACGACGATGCCCCGGAAGTGGGCTTGTTCGTGATGGCGGACACGGCCTACGGTAGTTGCTGTGTGGACGAGGTGGGAGCATCGCACGTGGATGCTGATGCTGTTGTTCATTACGGCCACACGTGCCTCAGCCCGACTACGACGCTTCCAGCGTTCTTTGTTTTTGGGAAGACTTCAATTAGTGTGCCTGATTGTGTGAAGAATCTATCGCATTATGCTTTGCCAAATGGGAGGCGGGTTTTGGTCCTTTTTGGTCTGGATTATGCACATTCAATACAGAATATCAGAGAAAAATTTGCAGAAGTATGCGGGGCTGAATCCAAACCAGAAGTTCAATATGCTAATGTTATTTGCTCAGTTATGAATCCATCAAAAGGTTGTAAAGTCTCAAATGAGGTCCAGGGAACATCTGGCAGCCTCACTGATAATAATAGTTTTGGGACAGTATCAGCTGATACGTATAGCATTGGAGGCTTGGTCTGGAAATTGCCTGAGGGACACAAGATGGACGATTACTTACTTTTCTGGATTGGTTCTAATAACTCTGCCTTTGCAAATATTGTTTTGACATATAATGGCTGTGAAATAGTCAGATATGATGCCTCGGAATGCAGTATGGTGACCGACTTATCTCAACAAAGAAAGATTCTTAAGCGCAGATATTACCTAATGGAGAAAGCAAAGGATGCTAACATTGTTGGGATCTTAGTAGGAACCCTTGGTGTAGCTGGTTACCTGAATATGATTCATCAGATGAAAGTGCTGATTACAGGAGCAGGGAAAAAAGTCTATACTCTAGTTATGGGAAGACCAAACCCTGCAAAACTTGCCAACTTTCCTGAGTGTGATATTTTCATTTATGTCTCTTGTGCCCAAACTGCTCTTCTGGATAGCAAAGAATATTTAGCTCCAGTAATTACACCTTTCGAAGCCATGCTAGCTTTCAACAGAGGATGTCAGTGGACTGGAGAATATGTAATGGAATTCCGCGATTTGATTAATTCTTCTCCAGTGGAATCAAGGAACTTTTCTGAAGAAGCACGATTTTCCTTCTTGCAAGGTGGTTATGTAGAAGATTTTGATCCGCAAGGGAATGGTACTGAGGAAGATAAGGAAGGAGCTCTTGCTTTAGCAAATGCGACAGAGAAGGTTCTGCAATTGCGTGATAACCCGAATTCTATAGTGAAAGGAACAGCTAAATCTGGTGCAGAGTTTTTAGCCACTCGATCCTATCAAGGTCTAGATATACATTACGACGGTTCCTTGCCAGAACCATATTTTATCGGGAGAAGTGGGAGGGCAGCAGGGTATGAAGATGAGAAGAACGGGCATGAGAAATCATGA

Protein Analysis

505

Amino Acids

55.39

Weight (kDa)

5.14

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 107, 1161
AciI CCGC 6 cut(s) 107, 209, 406, 480, 1159, 1256
AclWI GGATC 3 cut(s) 881, 1247, 1392
AcoI YGGCCR 2 cut(s) 36, 286
AcsI RAATTY 3 cut(s) 464, 1154, 1345
AcuI CTGAAG 2 cut(s) 119, 1224
AcvI CACGTG 2 cut(s) 259, 294
AfaI GTAC 1 cut(s) 1270
AfiI CCNNNNNNNGG 3 cut(s) 190, 191, 545
AflII CTTAAG 1 cut(s) 821
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 4 cut(s) 348, 444, 506, 1117
AjnI CCWGG 1 cut(s) 570
AjuI GAANNNNNNNTTGG 2 cut(s) 1038, 1070
AluBI AGCT 7 cut(s) 139, 623, 899, 1079, 1112, 1292, 1367
AluI AGCT 7 cut(s) 139, 623, 899, 1079, 1112, 1292, 1367
Alw21I GWGCWC 1 cut(s) 1294
Alw26I GTCTC 2 cut(s) 562, 1039
AlwI GGATC 3 cut(s) 881, 1247, 1392
AoxI GGCC 4 cut(s) 36, 132, 216, 286
ApeKI GCWGC 2 cut(s) 585, 1472
ApoI RAATTY 3 cut(s) 464, 1154, 1345
AseI ATTAAT 1 cut(s) 1170
AspLEI GCGC 2 cut(s) 127, 828
AspS9I GGNCC 3 cut(s) 132, 415, 568
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 55, 121, 802
AsuII TTCGAA 2 cut(s) 142, 1098
AsuNHI GCTAGC 1 cut(s) 1108
AvaII GGWCC 2 cut(s) 415, 568
AxyI CCTNAGG 1 cut(s) 663
BaeGI GKGCMC 1 cut(s) 1045
BanII GRGCYC 1 cut(s) 1294
BbrPI CACGTG 2 cut(s) 259, 294
BbsI GAAGAC 2 cut(s) 347, 985
Bbv12I GWGCWC 1 cut(s) 1294
BbvCI CCTCAGC 1 cut(s) 299
BbvI GCAGC 2 cut(s) 597, 1484
BccI CCATC 3 cut(s) 199, 547, 670
BceAI ACGGC 3 cut(s) 51, 231, 301
BciT130I CCWGG 1 cut(s) 572
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 2 cut(s) 562, 1039
BfaI CTAG 3 cut(s) 968, 1109, 1412
BfmI CTRYAG 1 cut(s) 1350
BfrI CTTAAG 1 cut(s) 821
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 2 cut(s) 586, 1473
BlsI GCNGC 2 cut(s) 587, 1474
Bme1390I CCNGG 2 cut(s) 185, 572
Bme18I GGWCC 2 cut(s) 415, 568
BmgT120I GGNCC 3 cut(s) 132, 415, 568
BmiI GGNNCC 2 cut(s) 886, 1432
BmrFI CCNGG 2 cut(s) 185, 572
BmsI GCATC 6 cut(s) 169, 253, 259, 260, 760, 847
BmtI GCTAGC 1 cut(s) 1112
BpiI GAAGAC 2 cut(s) 347, 985
BpmI CTGGAG 3 cut(s) 1065, 1158, 1164
Bpu10I CCTNAGC 2 cut(s) 128, 299
Bpu14I TTCGAA 2 cut(s) 142, 1098
BpuMI CCSGG 1 cut(s) 185
BsaAI YACGTR 3 cut(s) 259, 294, 630
BsaBI GATNNNNATC 1 cut(s) 1251
BsaJI CCNNGG 5 cut(s) 33, 183, 571, 774, 889
BsaXI ACNNNNNCTCC 4 cut(s) 633, 663, 1131, 1161
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 191, 545
Bse1I ACTGG 3 cut(s) 1082, 1141, 1181
Bse21I CCTNAGG 1 cut(s) 663
Bse8I GATNNNNATC 1 cut(s) 1251
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 5 cut(s) 33, 183, 571, 774, 889
BseGI GGATG 3 cut(s) 268, 862, 1130
BseJI GATNNNNATC 1 cut(s) 1251
BseLI CCNNNNNNNGG 3 cut(s) 190, 191, 545
BseMII CTCAG 6 cut(s) 140, 313, 540, 654, 1002, 1263
BseNI ACTGG 3 cut(s) 1082, 1141, 1181
BseSI GKGCMC 1 cut(s) 1045
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 597, 1484
BsgI GTGCAG 1 cut(s) 1398
Bsh1236I CGCG 2 cut(s) 107, 1161
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 4 cut(s) 38, 134, 218, 288
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 1294
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 2 cut(s) 625, 681
BslI CCNNNNNNNGG 3 cut(s) 190, 191, 545
BsmAI GTCTC 2 cut(s) 562, 1039
BsmFI GGGAC 2 cut(s) 625, 681
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 4 cut(s) 38, 134, 218, 288
Bsp119I TTCGAA 2 cut(s) 142, 1098
Bsp1286I GDGCHC 2 cut(s) 1045, 1294
Bsp143I GATC 3 cut(s) 873, 1252, 1397
BspACI CCGC 6 cut(s) 107, 209, 406, 480, 1159, 1256
BspANI GGCC 4 cut(s) 38, 134, 218, 288
BspCNI CTCAG 6 cut(s) 141, 312, 539, 655, 1003, 1264
BspFNI CGCG 2 cut(s) 107, 1161
BspHI TCATGA 1 cut(s) 1511
BspLI GGNNCC 2 cut(s) 886, 1432
BspOI GCTAGC 1 cut(s) 1112
BspPI GGATC 3 cut(s) 881, 1247, 1392
BspQI GCTCTTC 1 cut(s) 1059
BspT104I TTCGAA 2 cut(s) 142, 1098
BspTI CTTAAG 1 cut(s) 821
BsrI ACTGG 3 cut(s) 1082, 1141, 1181
BssECI CCNNGG 5 cut(s) 33, 183, 571, 774, 889
BssMI GATC 3 cut(s) 873, 1252, 1397
BssT1I CCWWGG 1 cut(s) 889
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 4 cut(s) 81, 224, 616, 1430
Bst6I CTCTTC 1 cut(s) 1059
BstAFI CTTAAG 1 cut(s) 821
BstAPI GCANNNNNTGC 2 cut(s) 857, 998
BstBAI YACGTR 3 cut(s) 259, 294, 630
BstBI TTCGAA 2 cut(s) 142, 1098
BstC8I GCNNGC 1 cut(s) 1110
BstDEI CTNAG 8 cut(s) 128, 149, 299, 526, 663, 877, 1011, 1272
BstDSI CCRYGG 1 cut(s) 33
BstEII GGTNACC 2 cut(s) 790, 902
BstF5I GGATG 3 cut(s) 268, 862, 1130
BstFNI CGCG 2 cut(s) 107, 1161
BstHHI GCGC 2 cut(s) 127, 828
BstKTI GATC 3 cut(s) 876, 1255, 1400
BstMAI GTCTC 2 cut(s) 562, 1039
BstMBI GATC 3 cut(s) 873, 1252, 1397
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 9 cut(s) 35, 131, 215, 294, 642, 857, 998, 1049, 1109
BstNI CCWGG 1 cut(s) 572
BstPI GGTNACC 2 cut(s) 790, 902
BstSCI CCNGG 2 cut(s) 183, 570
BstSFI CTRYAG 1 cut(s) 1350
BstSLI GKGCMC 1 cut(s) 1045
BstSNI TACGTA 1 cut(s) 630
BstUI CGCG 2 cut(s) 107, 1161
BstV1I GCAGC 2 cut(s) 597, 1484
BstV2I GAAGAC 2 cut(s) 347, 985
BstX2I RGATCY 1 cut(s) 873
BstYI RGATCY 1 cut(s) 873
BstZI CGGCCG 1 cut(s) 36
Bsu36I CCTNAGG 1 cut(s) 663
BsuRI GGCC 4 cut(s) 38, 134, 218, 288
BtgI CCRYGG 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 3 cut(s) 268, 862, 1130
BtsIMutI CAGTG 4 cut(s) 146, 591, 1136, 1188
Cac8I GCNNGC 1 cut(s) 1110
CciI TCATGA 1 cut(s) 1511
CfoI GCGC 2 cut(s) 127, 828
Cfr13I GGNCC 3 cut(s) 132, 415, 568
CseI GACGC 2 cut(s) 113, 322
Csp6I GTAC 1 cut(s) 1269
CviAII CATG 3 cut(s) 1105, 1502, 1512
CviQI GTAC 1 cut(s) 1269
DdeI CTNAG 8 cut(s) 128, 149, 299, 526, 663, 877, 1011, 1272
DpnI GATC 3 cut(s) 875, 1254, 1399
DpnII GATC 3 cut(s) 873, 1252, 1397
EaeI YGGCCR 2 cut(s) 36, 286
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 1059
EarI CTCTTC 1 cut(s) 1059
EciI GGCGGA 1 cut(s) 224
Ecl136II GAGCTC 1 cut(s) 1292
EclXI CGGCCG 1 cut(s) 36
Eco105I TACGTA 1 cut(s) 630
Eco130I CCWWGG 1 cut(s) 889
Eco24I GRGCYC 1 cut(s) 1294
Eco47I GGWCC 2 cut(s) 415, 568
Eco52I CGGCCG 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 1292
Eco57I CTGAAG 2 cut(s) 119, 1224
Eco72I CACGTG 2 cut(s) 259, 294
Eco81I CCTNAGG 1 cut(s) 663
Eco91I GGTNACC 2 cut(s) 790, 902
EcoICRI GAGCTC 1 cut(s) 1292
EcoO65I GGTNACC 2 cut(s) 790, 902
EcoRI GAATTC 2 cut(s) 1154, 1345
EcoRII CCWGG 1 cut(s) 570
EcoT14I CCWWGG 1 cut(s) 889
EcoT38I GRGCYC 1 cut(s) 1294
ErhI CCWWGG 1 cut(s) 889
FaeI CATG 3 cut(s) 1108, 1505, 1515
FalI AAGNNNNNCTT 2 cut(s) 1278, 1310
FaqI GGGAC 2 cut(s) 625, 681
FatI CATG 3 cut(s) 1104, 1501, 1511
FauI CCCGC 2 cut(s) 399, 473
Fnu4HI GCNGC 2 cut(s) 586, 1473
FokI GGATG 3 cut(s) 275, 869, 1137
FriOI GRGCYC 1 cut(s) 1294
Fsp4HI GCNGC 2 cut(s) 586, 1473
FspBI CTAG 3 cut(s) 968, 1109, 1412
GlaI GCGC 2 cut(s) 126, 827
GluI GCNGC 2 cut(s) 586, 1473
GsuI CTGGAG 3 cut(s) 1065, 1158, 1164
HaeIII GGCC 4 cut(s) 38, 134, 218, 288
HapII CCGG 1 cut(s) 185
HgaI GACGC 2 cut(s) 113, 322
HhaI GCGC 2 cut(s) 127, 828
Hin1II CATG 3 cut(s) 1108, 1505, 1515
Hin6I GCGC 2 cut(s) 125, 826
HinP1I GCGC 2 cut(s) 125, 826
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 9 cut(s) 11, 69, 155, 373, 488, 535, 817, 916, 1187
HpaII CCGG 1 cut(s) 185
HphI GGTGA 3 cut(s) 55, 121, 802
Hpy166II GTNNAC 3 cut(s) 63, 238, 1134
Hpy188I TCNGA 7 cut(s) 51, 99, 458, 764, 778, 924, 1204
Hpy188III TCNNGA 9 cut(s) 202, 428, 652, 697, 1010, 1058, 1412, 1456, 1512
Hpy8I GTNNAC 3 cut(s) 63, 238, 1134
Hpy99I CGWCG 3 cut(s) 179, 316, 1430
HpyAV CCTTC 4 cut(s) 94, 1231, 1280, 1312
HpyCH4III ACNGT 4 cut(s) 81, 224, 616, 1430
HpyCH4IV ACGT 3 cut(s) 258, 293, 629
HpyCH4V TGCA 8 cut(s) 437, 470, 725, 783, 992, 1228, 1327, 1379
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 131, 215, 294, 642, 857, 998, 1049, 1109
HpyF3I CTNAG 8 cut(s) 128, 149, 299, 526, 663, 877, 1011, 1272
HpySE526I ACGT 3 cut(s) 258, 293, 629
Hsp92II CATG 3 cut(s) 1108, 1505, 1515
HspAI GCGC 2 cut(s) 125, 826
Kzo9I GATC 3 cut(s) 873, 1252, 1397
LguI GCTCTTC 1 cut(s) 1059
LmnI GCTCC 4 cut(s) 248, 944, 1084, 1289
Lsp1109I GCAGC 2 cut(s) 597, 1484
LweI GCATC 6 cut(s) 169, 253, 259, 260, 760, 847
MaeI CTAG 3 cut(s) 968, 1109, 1412
MaeII ACGT 3 cut(s) 258, 293, 629
MaeIII GTNAC 2 cut(s) 790, 902
MalI GATC 3 cut(s) 875, 1254, 1399
MboI GATC 3 cut(s) 873, 1252, 1397
MfeI CAATTG 1 cut(s) 1328
MflI RGATCY 1 cut(s) 873
MhlI GDGCHC 2 cut(s) 1045, 1294
MluCI AATT 9 cut(s) 16, 348, 464, 656, 1086, 1154, 1171, 1328, 1345
MlyI GAGTC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 183
MseI TTAA 2 cut(s) 822, 1170
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 623
MspCI CTTAAG 1 cut(s) 821
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 185, 572
MunI CAATTG 1 cut(s) 1328
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 2 cut(s) 107, 1161
MwoI GCNNNNNNNGC 9 cut(s) 35, 131, 215, 294, 642, 857, 998, 1049, 1109
NciI CCSGG 1 cut(s) 185
NdeII GATC 3 cut(s) 873, 1252, 1397
NheI GCTAGC 1 cut(s) 1108
NlaIII CATG 3 cut(s) 1108, 1505, 1515
NlaIV GGNNCC 2 cut(s) 886, 1432
NmeAIII GCCGAG 2 cut(s) 64, 190
NmuCI GTSAC 1 cut(s) 790
NspV TTCGAA 2 cut(s) 142, 1098
PagI TCATGA 1 cut(s) 1511
PciSI GCTCTTC 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PctI GAATGC 1 cut(s) 785
PfeI GAWTC 8 cut(s) 11, 155, 373, 488, 535, 817, 916, 1187
PkrI GCNGC 2 cut(s) 587, 1474
PleI GAGTC 1 cut(s) 77
PmaCI CACGTG 2 cut(s) 259, 294
PmlI CACGTG 2 cut(s) 259, 294
PpsI GAGTC 1 cut(s) 77
Ppu21I YACGTR 3 cut(s) 259, 294, 630
PshBI ATTAAT 1 cut(s) 1170
Psp124BI GAGCTC 1 cut(s) 1294
Psp6I CCWGG 1 cut(s) 570
PspCI CACGTG 2 cut(s) 259, 294
PspEI GGTNACC 2 cut(s) 790, 902
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 2 cut(s) 886, 1432
PspPI GGNCC 3 cut(s) 132, 415, 568
PsuI RGATCY 1 cut(s) 873
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 1 cut(s) 1270
RsaNI GTAC 1 cut(s) 1269
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 1294
SapI GCTCTTC 1 cut(s) 1059
SaqAI TTAA 2 cut(s) 822, 1170
SatI GCNGC 2 cut(s) 586, 1473
Sau3AI GATC 3 cut(s) 873, 1252, 1397
Sau96I GGNCC 3 cut(s) 132, 415, 568
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 2 cut(s) 185, 572
SduI GDGCHC 2 cut(s) 1045, 1294
SfaNI GCATC 6 cut(s) 169, 253, 259, 260, 760, 847
SfcI CTRYAG 1 cut(s) 1350
SfuI TTCGAA 2 cut(s) 142, 1098
SinI GGWCC 2 cut(s) 415, 568
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
SnaBI TACGTA 1 cut(s) 630
Sse9I AATT 9 cut(s) 16, 348, 464, 656, 1086, 1154, 1171, 1328, 1345
SsiI CCGC 6 cut(s) 107, 209, 406, 480, 1159, 1256
SspI AATATT 2 cut(s) 730, 1073
SspMI CTAG 3 cut(s) 968, 1109, 1412
SstI GAGCTC 1 cut(s) 1294
StyD4I CCNGG 2 cut(s) 183, 570
StyI CCWWGG 1 cut(s) 889
TaaI ACNGT 4 cut(s) 81, 224, 616, 1430
TaiI ACGT 3 cut(s) 261, 296, 632
TaqI TCGA 4 cut(s) 14, 142, 1098, 1396
TaqII GACCGA 1 cut(s) 809
TasI AATT 9 cut(s) 16, 348, 464, 656, 1086, 1154, 1171, 1328, 1345
TfiI GAWTC 8 cut(s) 11, 155, 373, 488, 535, 817, 916, 1187
Tru1I TTAA 2 cut(s) 822, 1170
Tru9I TTAA 2 cut(s) 822, 1170
TscAI CASTG 4 cut(s) 153, 598, 1136, 1188
TseFI GTSAC 1 cut(s) 790
TseI GCWGC 2 cut(s) 585, 1472
Tsp45I GTSAC 1 cut(s) 790
TspDTI ATGAA 8 cut(s) 34, 105, 269, 548, 908, 941, 1015, 1497
TspRI CASTG 4 cut(s) 153, 598, 1136, 1188
Vha464I CTTAAG 1 cut(s) 821
VpaK11BI GGWCC 2 cut(s) 415, 568
VspI ATTAAT 1 cut(s) 1170
XapI RAATTY 3 cut(s) 464, 1154, 1345
XbaI TCTAGA 1 cut(s) 1411
XcmI CCANNNNNNNNNTGG 1 cut(s) 578
XspI CTAG 3 cut(s) 968, 1109, 1412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.