FvH4_4g12430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014714
Physical Location & Seq
Reverse (-)
16114931 .. 16118755
3825 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12430.t1

Sequence Viewer

Length: 969 bp
ATGCAACCTCACCAGAAAAACCCAGCTGGGGATTCGCAACCTCTGCCCCCACAGCCACAATTAGCGTCAAATGCTCAACCCGATAAGCATCCTTTCTCTATAAGACAGCATGTTCTTGCTTGTCGTCAGAGAGATGTCATTTCCAACTGGCCATTCCCAAAGCAATACTTGCATCTGTGTCTCAGTCACGGGATCAAGGAGGTGTTGCCACCCCTTGAATCCCATAAATCAGCTCTGCAGTCAATTAAAGGAGTTATAAGTTTGCATTGTGCTCAGCAAGAAGATAAGGATGGTGGTCTCTTTCGGAACAAATCATTGGATACTGTTGTGCAAGAGAATGAATGTGAATGTGTATTGAACACTGAGCCTTCATTATCAGAACTTTCAATCCAGTATTGCCCTTCCTCTCCCTCTAATAGAATTCACGATCATGAAGAAAATGAGTCTAGTTTAAGTCCTGAAGTTGCTTCCAGTTCCATTATCATATGCTCAACAGACCAGCCTTCAGCTACAGTACCAAGCTCACAAAACAAAAATAGTTTTAGTCCCCATGTTGCTTCCAGTTCCAGTGTCATAGTTTCAACAGATCAACCTTCAACTTCAATACAAACTACAACTACATTGAGTTCTATCAGAAAGATGAGTCGTAAGGAAAGGCGACGTAATGGTAAGCAGAAGAAGCGGACGATGGCTGCTATTTTAGATGTAGCTAAGCCATCTACATTAGAGGATCTTCTTAGAATTAAAAGATTGTGCTGTGTTTCAAGCGACCCTCTTGAACTGGGGGGAGAAACAACAGAAAGAACAGAATGTATCAACGATGATGAGAATAATTGTGAATCTGACCTAACCAAGGATTACTCCAGTGAAAAAGTTGAGAGAGATTGTGAAGCAGCTAATCTCAGTATGCAATCCAGACAAAGGTTGGTGGTGAAGTTCAATTTTAGCGGATGTGAATCTAATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

35.68

Weight (kDa)

6.08

Isoelectric Point (pI)

68.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g12430 FvH4_4g12430
malus_domestica MD04G1026500.v1.1
prunus_persica Prupe.1G176100_v2.0.a1 Prupe.1G176100_v2.0.a1
pyrus_communis pycom04g02260
rosa_chinensis RchiOBHm_Chr4g0410661
rosa_laevigata RLG00000008408
rosa_multiflora Rmu_ssc0000072.1_g000017
rosa_roxburghii Rroxscaffold_5G00355440
rosa_rugosa Rorug04G0111600 Rorug04G0111700
rosa_samantha Rh4AG162200 Rh4BG161200 Rh4CG175200 Rh4DG158000
rosa_wichuraiana Rw4G013530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AciI CCGC 2 cut(s) 682, 948
AclWI GGATC 2 cut(s) 200, 738
AcoI YGGCCR 1 cut(s) 149
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 2 cut(s) 480, 489
AfaI GTAC 1 cut(s) 516
AfiI CCNNNNNNNGG 3 cut(s) 28, 853, 921
AgsI TTSAA 9 cut(s) 218, 358, 387, 582, 597, 603, 765, 779, 940
AjuI GAANNNNNNNTTGG 4 cut(s) 137, 169, 299, 331
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
AluBI AGCT 6 cut(s) 26, 233, 509, 522, 710, 896
AluI AGCT 6 cut(s) 26, 233, 509, 522, 710, 896
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 185, 302
AlwI GGATC 2 cut(s) 200, 738
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 2 cut(s) 692, 893
ApoI RAATTY 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 943
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BalI TGGCCA 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 679, 905
BccI CCATC 3 cut(s) 284, 682, 724
BciVI GTATCC 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 185, 302
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 2 cut(s) 236, 510
BfuI GTATCC 1 cut(s) 313
BisI GCNGC 2 cut(s) 693, 894
BlpI GCTNAGC 2 cut(s) 273, 711
BlsI GCNGC 2 cut(s) 694, 895
BmrI ACTGGG 1 cut(s) 791
BmsI GCATC 2 cut(s) 97, 181
BmuI ACTGGG 1 cut(s) 791
BpmI CTGGAG 1 cut(s) 847
Bpu1102I GCTNAGC 2 cut(s) 273, 711
BsaBI GATNNNNATC 2 cut(s) 87, 955
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 852
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 853, 921
Bse1I ACTGG 7 cut(s) 152, 391, 471, 561, 567, 786, 864
Bse8I GATNNNNATC 2 cut(s) 87, 955
BseDI CCNNGG 1 cut(s) 852
BseGI GGATG 3 cut(s) 88, 295, 956
BseJI GATNNNNATC 2 cut(s) 87, 955
BseLI CCNNNNNNNGG 3 cut(s) 28, 853, 921
BseMII CTCAG 4 cut(s) 196, 287, 354, 916
BseNI ACTGG 7 cut(s) 152, 391, 471, 561, 567, 786, 864
BseXI GCAGC 2 cut(s) 679, 905
BseYI CCCAGC 2 cut(s) 22, 26
BshFI GGCC 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 274
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 28, 853, 921
BsmAI GTCTC 2 cut(s) 185, 302
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 1 cut(s) 151
Bso31I GGTCTC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 4 cut(s) 192, 427, 586, 730
Bsp1720I GCTNAGC 2 cut(s) 273, 711
BspACI CCGC 2 cut(s) 682, 948
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 4 cut(s) 195, 286, 355, 915
BspHI TCATGA 1 cut(s) 430
BspMAI CTGCAG 1 cut(s) 240
BspPI GGATC 2 cut(s) 200, 738
BspTNI GGTCTC 1 cut(s) 302
BsrI ACTGG 7 cut(s) 152, 391, 471, 561, 567, 786, 864
BssECI CCNNGG 1 cut(s) 852
BssMI GATC 4 cut(s) 192, 427, 586, 730
BssT1I CCWWGG 1 cut(s) 852
Bst4CI ACNGT 2 cut(s) 325, 514
BstAPI GCANNNNNTGC 2 cut(s) 43, 169
BstDEI CTNAG 6 cut(s) 182, 273, 363, 711, 737, 902
BstENI CCTNNNNNAGG 1 cut(s) 851
BstF5I GGATG 3 cut(s) 88, 295, 956
BstKTI GATC 4 cut(s) 195, 430, 589, 733
BstMAI GTCTC 2 cut(s) 185, 302
BstMBI GATC 4 cut(s) 192, 427, 586, 730
BstMWI GCNNNNNNNGC 5 cut(s) 43, 52, 71, 169, 679
BstNSI RCATGY 1 cut(s) 113
BstSFI CTRYAG 2 cut(s) 236, 510
BstV1I GCAGC 2 cut(s) 679, 905
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 1 cut(s) 151
BtsCI GGATG 3 cut(s) 88, 295, 956
BtsIMutI CAGTG 3 cut(s) 360, 574, 871
CciI TCATGA 1 cut(s) 430
CseI GACGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 515
CviAII CATG 3 cut(s) 110, 431, 551
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 6 cut(s) 182, 273, 363, 711, 737, 902
DpnI GATC 4 cut(s) 194, 429, 588, 732
DpnII GATC 4 cut(s) 192, 427, 586, 730
EaeI YGGCCR 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 852
Eco31I GGTCTC 1 cut(s) 302
Eco57I CTGAAG 2 cut(s) 480, 489
EcoNI CCTNNNNNAGG 1 cut(s) 851
EcoRI GAATTC 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 852
FaeI CATG 3 cut(s) 113, 434, 554
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 531
FatI CATG 3 cut(s) 109, 430, 550
FauNDI CATATG 1 cut(s) 485
Fnu4HI GCNGC 2 cut(s) 693, 894
FokI GGATG 3 cut(s) 75, 302, 963
Fsp4HI GCNGC 2 cut(s) 693, 894
FspBI CTAG 1 cut(s) 447
GluI GCNGC 2 cut(s) 693, 894
GsaI CCCAGC 2 cut(s) 26, 30
GsuI CTGGAG 1 cut(s) 847
HaeIII GGCC 1 cut(s) 151
HgaI GACGC 1 cut(s) 54
Hin1II CATG 3 cut(s) 113, 434, 554
HinfI GANTC 6 cut(s) 32, 218, 443, 643, 839, 956
HphI GGTGA 1 cut(s) 943
Hpy188I TCNGA 5 cut(s) 129, 306, 379, 635, 844
Hpy188III TCNNGA 5 cut(s) 425, 431, 458, 776, 915
Hpy99I CGWCG 1 cut(s) 663
HpyAV CCTTC 4 cut(s) 378, 411, 513, 603
HpyCH4III ACNGT 2 cut(s) 325, 514
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 6 cut(s) 4, 172, 238, 265, 331, 910
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 52, 71, 169, 679
HpyF3I CTNAG 6 cut(s) 182, 273, 363, 711, 737, 902
HpySE526I ACGT 1 cut(s) 661
Hsp92II CATG 3 cut(s) 113, 434, 554
Kzo9I GATC 4 cut(s) 192, 427, 586, 730
Lsp1109I GCAGC 2 cut(s) 679, 905
LweI GCATC 2 cut(s) 97, 181
MaeI CTAG 1 cut(s) 447
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 1 cut(s) 185
MalI GATC 4 cut(s) 194, 429, 588, 732
MboI GATC 4 cut(s) 192, 427, 586, 730
MboII GAAGA 4 cut(s) 293, 446, 688, 725
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 151
MluCI AATT 6 cut(s) 59, 243, 420, 741, 832, 940
MluNI TGGCCA 1 cut(s) 151
MlyI GAGTC 2 cut(s) 452, 652
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 7 cut(s) 18, 51, 193, 415, 421, 721, 783
Mox20I TGGCCA 1 cut(s) 151
MscI TGGCCA 1 cut(s) 151
MseI TTAA 3 cut(s) 246, 452, 744
MslI CAYNNNNRTG 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 43, 52, 71, 169, 679
NdeI CATATG 1 cut(s) 485
NdeII GATC 4 cut(s) 192, 427, 586, 730
NlaIII CATG 3 cut(s) 113, 434, 554
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 113
PagI TCATGA 1 cut(s) 430
PfeI GAWTC 4 cut(s) 32, 218, 839, 956
PkrI GCNGC 2 cut(s) 694, 895
PleI GAGTC 2 cut(s) 451, 651
PpsI GAGTC 2 cut(s) 451, 651
PsiI TTATAA 1 cut(s) 257
PspFI CCCAGC 2 cut(s) 22, 26
PstI CTGCAG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 730
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 3 cut(s) 246, 452, 744
SatI GCNGC 2 cut(s) 693, 894
Sau3AI GATC 4 cut(s) 192, 427, 586, 730
SchI GAGTC 2 cut(s) 452, 652
SduI GDGCHC 1 cut(s) 274
SfaNI GCATC 2 cut(s) 97, 181
SfcI CTRYAG 2 cut(s) 236, 510
SmiMI CAYNNNNRTG 1 cut(s) 429
Sse9I AATT 6 cut(s) 59, 243, 420, 741, 832, 940
SsiI CCGC 2 cut(s) 682, 948
SspMI CTAG 1 cut(s) 447
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 2 cut(s) 325, 514
TaiI ACGT 1 cut(s) 664
TasI AATT 6 cut(s) 59, 243, 420, 741, 832, 940
TfiI GAWTC 4 cut(s) 32, 218, 839, 956
Tru1I TTAA 3 cut(s) 246, 452, 744
Tru9I TTAA 3 cut(s) 246, 452, 744
TscAI CASTG 3 cut(s) 367, 574, 871
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 2 cut(s) 692, 893
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 354, 360, 447
TspRI CASTG 3 cut(s) 367, 574, 871
XagI CCTNNNNNAGG 1 cut(s) 851
XapI RAATTY 1 cut(s) 420
XceI RCATGY 1 cut(s) 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.