Rroxscaffold_5G00355440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014714
Physical Location & Seq
Reverse (-)
34096643 .. 34100418
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355440.1

Sequence Viewer

Length: 966 bp
ATGCCATCTCAGCAGAAAAACCCACCTGGGGATTCGCAACCTCTGCCGCCCCAGCCACAATTAGCTTCGAATCATAGTCACGCTCAACCCGACAAGCATCCTTTCTCTATAAGACAGCATGTTCTTGCTTGTCGTCAGAGAGATGTCATTTCTAACTGGCCATTTCCAAAGAAATACTTGCATATGTGTCTCAGTCGCGGTATCAAGGAGGTGTTGCCACCGCTTGAGTCCCATAAATCAGCTCTGCAATCAATTAGAGGAGTTGTGAGTTTGAATCGTGCTCAGCAAGAAGATAAGGATGATCATCTCTTTCGAAACAAATCATTGGATACTGTTGTGCAGGAGAATGAATGTGAATGTGTATTGAACACTGAGCCATCAATATCAGAATTTTCGATCCAGTATTGCCCTTCTTCTCCTTTAAATAGAAGTCAGGAGACTAATTTAAGTCATGAAGTTGCTTCCAGTTCCATTTTAATATGTTCAACAGATCAACCTTCAGCTACAATACCAAGATCACAAAACAAGAATGGTTTTAGTCCCCATGTTGCTTCCAGTTCCAGTGTCGTCGTTTCAACAGATCAACCTTCAACTTCAATACAAACTACAACTACGTTGACTTCTATTAGGAAGCTGAGTCGTAAGGAAAGACGACGTAATGGTAAGCAGAAGAAGCGGACGATGGCTGATATTTTAGATGTAGCTAAGCCATGTACAGCAGAGGATCTTCTTAGGATTAAAAGATTGTGCTGTGTTTCAAGCAACCCTCTTGAGCTGGGGGGTGAAGGAACGAAATGTATCATTGATGATGAGAATAATTGTGAATCTGACCTAACCAAGGATTGCTCAAGTGAAAAACTTGAAAGAGATTGTGAAGCAGCTAATCTCAGTATGCAATCCAGACAAAGATTGGTGGTGAAGTTCAATTTTAGCGGACGTGAATCCAATGTCCAAAGCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.8

Weight (kDa)

8.53

Isoelectric Point (pI)

62.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g12430 FvH4_4g12430
malus_domestica MD04G1026500.v1.1
prunus_persica Prupe.1G176100_v2.0.a1 Prupe.1G176100_v2.0.a1
pyrus_communis pycom04g02260
rosa_chinensis RchiOBHm_Chr4g0410661
rosa_laevigata RLG00000008408
rosa_multiflora Rmu_ssc0000072.1_g000017
rosa_roxburghii Rroxscaffold_5G00355440
rosa_rugosa Rorug04G0111600 Rorug04G0111700
rosa_samantha Rh4AG162200 Rh4BG161200 Rh4CG175200 Rh4DG158000
rosa_wichuraiana Rw4G013530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 198
AciI CCGC 5 cut(s) 47, 198, 221, 676, 933
AclWI GGATC 2 cut(s) 391, 732
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 1 cut(s) 715
AfiI CCNNNNNNNGG 2 cut(s) 28, 838
AgsI TTSAA 9 cut(s) 274, 367, 486, 576, 591, 597, 759, 863, 925
AjiI CACGTC 1 cut(s) 938
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 7 cut(s) 65, 242, 503, 634, 704, 775, 881
AluI AGCT 7 cut(s) 65, 242, 503, 634, 704, 775, 881
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 2 cut(s) 194, 431
AlwI GGATC 2 cut(s) 391, 732
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 878
ApoI RAATTY 1 cut(s) 389
AsuHPI GGTGA 2 cut(s) 794, 928
AsuII TTCGAA 2 cut(s) 68, 313
BaeI ACNNNNGTAYC 2 cut(s) 321, 354
BalI TGGCCA 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 890
BccI CCATC 3 cut(s) 13, 385, 676
BciT130I CCWGG 1 cut(s) 27
BciVI GTATCC 1 cut(s) 322
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 194, 431
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 2 cut(s) 47, 879
BlpI GCTNAGC 2 cut(s) 282, 705
BlsI GCNGC 2 cut(s) 48, 880
Bme1390I CCNGG 1 cut(s) 27
BmgBI CACGTC 1 cut(s) 938
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 106
Bpu1102I GCTNAGC 2 cut(s) 282, 705
Bpu14I TTCGAA 2 cut(s) 68, 313
BpuEI CTTGAG 3 cut(s) 245, 791, 832
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 26, 837
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 838
Bse1I ACTGG 5 cut(s) 161, 400, 465, 555, 561
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 26, 837
BseGI GGATG 2 cut(s) 97, 304
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 28, 838
BseMII CTCAG 6 cut(s) 23, 205, 296, 363, 626, 901
BseNI ACTGG 5 cut(s) 161, 400, 465, 555, 561
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 890
BseYI CCCAGC 2 cut(s) 51, 775
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 283
BslFI GGGAC 2 cut(s) 214, 525
BslI CCNNNNNNNGG 2 cut(s) 28, 838
BsmAI GTCTC 2 cut(s) 194, 431
BsmFI GGGAC 2 cut(s) 214, 525
BsnI GGCC 1 cut(s) 160
Bsp119I TTCGAA 2 cut(s) 68, 313
Bsp1286I GDGCHC 1 cut(s) 283
Bsp1407I TGTACA 1 cut(s) 713
Bsp143I GATC 6 cut(s) 301, 396, 490, 515, 580, 724
Bsp1720I GCTNAGC 2 cut(s) 282, 705
BspACI CCGC 5 cut(s) 47, 198, 221, 676, 933
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 6 cut(s) 22, 204, 295, 364, 627, 900
BspFNI CGCG 1 cut(s) 198
BspHI TCATGA 1 cut(s) 451
BspPI GGATC 2 cut(s) 391, 732
BspT104I TTCGAA 2 cut(s) 68, 313
BsrGI TGTACA 1 cut(s) 713
BsrI ACTGG 5 cut(s) 161, 400, 465, 555, 561
BssECI CCNNGG 2 cut(s) 26, 837
BssMI GATC 6 cut(s) 301, 396, 490, 515, 580, 724
BssT1I CCWWGG 1 cut(s) 837
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 334
BstAPI GCANNNNNTGC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 713
BstBI TTCGAA 2 cut(s) 68, 313
BstDEI CTNAG 8 cut(s) 9, 191, 282, 372, 635, 705, 731, 887
BstENI CCTNNNNNAGG 1 cut(s) 836
BstF5I GGATG 2 cut(s) 97, 304
BstFNI CGCG 1 cut(s) 198
BstKTI GATC 6 cut(s) 304, 399, 493, 518, 583, 727
BstMAI GTCTC 2 cut(s) 194, 431
BstMBI GATC 6 cut(s) 301, 396, 490, 515, 580, 724
BstMWI GCNNNNNNNGC 4 cut(s) 10, 43, 52, 673
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 25
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 890
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 160
BtrI CACGTC 1 cut(s) 938
BtsCI GGATG 2 cut(s) 97, 304
BtsIMutI CAGTG 2 cut(s) 369, 568
CciI TCATGA 1 cut(s) 451
Csp6I GTAC 1 cut(s) 714
CviAII CATG 4 cut(s) 119, 452, 545, 711
CviQI GTAC 1 cut(s) 714
DdeI CTNAG 8 cut(s) 9, 191, 282, 372, 635, 705, 731, 887
DpnI GATC 6 cut(s) 303, 398, 492, 517, 582, 726
DpnII GATC 6 cut(s) 301, 396, 490, 515, 580, 724
DraI TTTAAA 1 cut(s) 423
EaeI YGGCCR 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 837
Eco57I CTGAAG 1 cut(s) 483
EcoNI CCTNNNNNAGG 1 cut(s) 836
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 837
FaeI CATG 4 cut(s) 122, 455, 548, 714
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 2 cut(s) 214, 525
FatI CATG 4 cut(s) 118, 451, 544, 710
FauNDI CATATG 1 cut(s) 183
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 47, 879
FokI GGATG 2 cut(s) 84, 311
Fsp4HI GCNGC 2 cut(s) 47, 879
GluI GCNGC 2 cut(s) 47, 879
GsaI CCCAGC 2 cut(s) 55, 779
HaeIII GGCC 1 cut(s) 160
Hin1II CATG 4 cut(s) 122, 455, 548, 714
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 7 cut(s) 32, 70, 227, 274, 637, 824, 941
HphI GGTGA 2 cut(s) 794, 928
Hpy166II GTNNAC 1 cut(s) 618
Hpy188I TCNGA 3 cut(s) 138, 388, 829
Hpy188III TCNNGA 4 cut(s) 434, 452, 770, 900
Hpy8I GTNNAC 1 cut(s) 618
Hpy99I CGWCG 2 cut(s) 572, 657
HpyAV CCTTC 4 cut(s) 420, 507, 597, 779
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 3 cut(s) 614, 655, 937
HpyCH4V TGCA 4 cut(s) 181, 247, 340, 895
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 43, 52, 673
HpyF3I CTNAG 8 cut(s) 9, 191, 282, 372, 635, 705, 731, 887
HpySE526I ACGT 3 cut(s) 614, 655, 937
Hsp92II CATG 4 cut(s) 122, 455, 548, 714
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 6 cut(s) 301, 396, 490, 515, 580, 724
Lsp1109I GCAGC 1 cut(s) 890
LweI GCATC 1 cut(s) 106
MaeII ACGT 3 cut(s) 614, 655, 937
MaeIII GTNAC 1 cut(s) 77
MalI GATC 6 cut(s) 303, 398, 492, 517, 582, 726
MboI GATC 6 cut(s) 301, 396, 490, 515, 580, 724
MboII GAAGA 4 cut(s) 302, 405, 682, 719
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 6 cut(s) 59, 252, 389, 442, 817, 925
MluNI TGGCCA 1 cut(s) 160
MlyI GAGTC 2 cut(s) 236, 646
MnlI CCTC 5 cut(s) 51, 202, 251, 715, 777
Mox20I TGGCCA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 160
MseI TTAA 4 cut(s) 422, 446, 476, 738
Msp20I TGGCCA 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 4 cut(s) 10, 43, 52, 673
NdeI CATATG 1 cut(s) 183
NdeII GATC 6 cut(s) 301, 396, 490, 515, 580, 724
NlaIII CATG 4 cut(s) 122, 455, 548, 714
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 2 cut(s) 68, 313
PagI TCATGA 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 5 cut(s) 32, 70, 274, 824, 941
PkrI GCNGC 2 cut(s) 48, 880
PleI GAGTC 2 cut(s) 235, 645
PpsI GAGTC 2 cut(s) 235, 645
Psp6I CCWGG 1 cut(s) 25
PspFI CCCAGC 2 cut(s) 51, 775
PspGI CCWGG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 724
RsaI GTAC 1 cut(s) 715
RsaNI GTAC 1 cut(s) 714
SaqAI TTAA 4 cut(s) 422, 446, 476, 738
SatI GCNGC 2 cut(s) 47, 879
Sau3AI GATC 6 cut(s) 301, 396, 490, 515, 580, 724
SchI GAGTC 2 cut(s) 236, 646
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 283
SfaNI GCATC 1 cut(s) 106
SfuI TTCGAA 2 cut(s) 68, 313
SmlI CTYRAG 3 cut(s) 224, 770, 847
SmoI CTYRAG 3 cut(s) 224, 770, 847
Sse9I AATT 6 cut(s) 59, 252, 389, 442, 817, 925
SsiI CCGC 5 cut(s) 47, 198, 221, 676, 933
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 837
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 3 cut(s) 617, 658, 940
TaqI TCGA 3 cut(s) 68, 313, 395
TasI AATT 6 cut(s) 59, 252, 389, 442, 817, 925
TatI WGTACW 1 cut(s) 713
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 5 cut(s) 32, 70, 274, 824, 941
Tru1I TTAA 4 cut(s) 422, 446, 476, 738
Tru9I TTAA 4 cut(s) 422, 446, 476, 738
TscAI CASTG 2 cut(s) 376, 568
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 878
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 363, 468
TspRI CASTG 2 cut(s) 376, 568
XagI CCTNNNNNAGG 1 cut(s) 836
XapI RAATTY 1 cut(s) 389
XceI RCATGY 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.