Prupe.1G176100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014714
Physical Location & Seq
Forward (+)
14897372 .. 14901030
3659 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G176100.1

Sequence Viewer

Length: 909 bp
ATGCTGCCTCAGCAGAAAAACCCAGCTGGGGTTTCCCAATCTATGCATCAGCAAACAACTTCAAATAACAATCTTGAGGAACCAGAGAAAAGACCCTTCTCTATAAGACAGTATGTTCTTGCTTGTCGTCAGAAAGATGTCTTTTCTAACTGGCCATTTCCAGAAAAATACTTGCAAATTTGTCTCAATTACGGTATTAGTGATGTGTTGCCGCCCCTTGAATCCCATAATTCAGCCATCCAATCACTCAGAGGAGCTGTAGGTTTGAATTGTACTCAACAAGATGATGAGAATGTTGATTACTCCGAAGACAAAGAACCAGATACCATTGAGCAGGAGATTGAAGATGAGTGTAAATTATACTCTGACTCTGAGGAAGCAGTATCGGCACTTTCAATCCAACATTGCCATTTATCTCCTTCAGATAGCAGTCATAAGTATGAAGAAAACAAGACTGGCTTCAGTCCCCACGATGCTTCCAATATTGTGGTTTCAACAGATCAACCTTCAACACCTTCAACTACAATACCAAGTTCACACCTTAATGTTATTCAGTGTAATAAAACATTGACTTCTTCTATGAAGCCGAGGCGTATGAAAAAACAACACAAGGGTAAGCATAAGAAGCGGTCGATGGCAAGTATTTTATCTGTAGCCAAGCCTTGTACATCAGAGGATCTCCTTAGAATTAAAAGATTGTGCTGTGTTTCGAGCGCACCTCTTGAGCAGGGGGGTGAAGGAATTGAGAATATGATCGATGTTAGGCATGACTGCAATTCTGATCTAACCAAGGATTTCTCGAGTGAAAAGCTTGAAAGAGATGATAGTGAAGAAGCCAAGCTCAGTATGCTGTCCAGACAAAAAATTGTTGTGAAGTTCAAGTTTAGCTGTGGCAAATCCGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

33.91

Weight (kDa)

5.84

Isoelectric Point (pI)

73.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g12430 FvH4_4g12430
malus_domestica MD04G1026500.v1.1
prunus_persica Prupe.1G176100_v2.0.a1 Prupe.1G176100_v2.0.a1
pyrus_communis pycom04g02260
rosa_chinensis RchiOBHm_Chr4g0410661
rosa_laevigata RLG00000008408
rosa_multiflora Rmu_ssc0000072.1_g000017
rosa_roxburghii Rroxscaffold_5G00355440
rosa_rugosa Rorug04G0111600 Rorug04G0111700
rosa_samantha Rh4AG162200 Rh4BG161200 Rh4CG175200 Rh4DG158000
rosa_wichuraiana Rw4G013530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 212, 628
AclWI GGATC 1 cut(s) 684
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 1 cut(s) 177
AcuI CTGAAG 2 cut(s) 405, 445
AfaI GTAC 2 cut(s) 274, 667
AfiI CCNNNNNNNGG 1 cut(s) 28
AluBI AGCT 5 cut(s) 26, 257, 811, 841, 888
AluI AGCT 5 cut(s) 26, 257, 811, 841, 888
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 1 cut(s) 684
Ama87I CYCGRG 1 cut(s) 799
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 177
ArsI GACNNNNNNTTYG 1 cut(s) 888
AspLEI GCGC 1 cut(s) 716
AsuHPI GGTGA 1 cut(s) 746
AvaI CYCGRG 1 cut(s) 799
BalI TGGCCA 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 315
BbvCI CCTCAGC 1 cut(s) 9
BccI CCATC 2 cut(s) 245, 628
BcoDI GTCTC 1 cut(s) 188
BfmI CTRYAG 2 cut(s) 258, 651
BisI GCNGC 2 cut(s) 5, 212
BlsI GCNGC 2 cut(s) 6, 213
BmeT110I CYCGRG 1 cut(s) 799
BmiI GGNNCC 1 cut(s) 81
BmsI GCATC 2 cut(s) 55, 463
BpiI GAAGAC 1 cut(s) 315
BplI GAGNNNNNCTC 2 cut(s) 703, 735
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 95, 743
Bsa29I ATCGAT 1 cut(s) 756
BsaJI CCNNGG 2 cut(s) 587, 789
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 155, 460
Bse3DI GCAATG 1 cut(s) 403
BseCI ATCGAT 1 cut(s) 756
BseDI CCNNGG 2 cut(s) 587, 789
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 4 cut(s) 23, 262, 363, 856
BseNI ACTGG 2 cut(s) 155, 460
BseRI GAGGAG 1 cut(s) 267
BseYI CCCAGC 2 cut(s) 22, 26
Bsh1285I CGRYCG 1 cut(s) 632
BshFI GGCC 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 756
BsiEI CGRYCG 1 cut(s) 632
BsiHKCI CYCGRG 1 cut(s) 799
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 450
BsnI GGCC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 799
Bsp1407I TGTACA 1 cut(s) 665
Bsp143I GATC 4 cut(s) 499, 676, 753, 781
BspACI CCGC 2 cut(s) 212, 628
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 4 cut(s) 22, 261, 364, 855
BspDI ATCGAT 1 cut(s) 756
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 403
BsrGI TGTACA 1 cut(s) 665
BsrI ACTGG 2 cut(s) 155, 460
BssECI CCNNGG 2 cut(s) 587, 789
BssMI GATC 4 cut(s) 499, 676, 753, 781
BssT1I CCWWGG 1 cut(s) 789
Bst4CI ACNGT 2 cut(s) 111, 194
BstAUI TGTACA 1 cut(s) 665
BstDEI CTNAG 5 cut(s) 9, 248, 372, 683, 842
BstF5I GGATG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 4 cut(s) 502, 679, 756, 784
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 4 cut(s) 499, 676, 753, 781
BstMCI CGRYCG 1 cut(s) 632
BstMWI GCNNNNNNNGC 4 cut(s) 10, 386, 625, 847
BstSFI CTRYAG 2 cut(s) 258, 651
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 676
BstXI CCANNNNNNTGG 1 cut(s) 487
BstYI RGATCY 1 cut(s) 676
Bsu15I ATCGAT 1 cut(s) 756
BsuRI GGCC 1 cut(s) 154
BsuTUI ATCGAT 1 cut(s) 756
BtsCI GGATG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 560
CfoI GCGC 1 cut(s) 716
ClaI ATCGAT 1 cut(s) 756
Csp6I GTAC 2 cut(s) 273, 666
CviAII CATG 1 cut(s) 767
CviQI GTAC 2 cut(s) 273, 666
DdeI CTNAG 5 cut(s) 9, 248, 372, 683, 842
DpnI GATC 4 cut(s) 501, 678, 755, 783
DpnII GATC 4 cut(s) 499, 676, 753, 781
EaeI YGGCCR 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 789
Eco57I CTGAAG 2 cut(s) 405, 445
Eco88I CYCGRG 1 cut(s) 799
EcoT14I CCWWGG 1 cut(s) 789
EcoT22I ATGCAT 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 1 cut(s) 770
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FaqI GGGAC 1 cut(s) 450
FatI CATG 1 cut(s) 766
Fnu4HI GCNGC 2 cut(s) 5, 212
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 5, 212
GlaI GCGC 1 cut(s) 715
GluI GCNGC 2 cut(s) 5, 212
GsaI CCCAGC 2 cut(s) 26, 30
HaeIII GGCC 1 cut(s) 154
HhaI GCGC 1 cut(s) 716
Hin1II CATG 1 cut(s) 770
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 2 cut(s) 221, 368
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 1 cut(s) 536
Hpy188III TCNNGA 5 cut(s) 74, 161, 722, 799, 855
Hpy8I GTNNAC 1 cut(s) 536
HpyAV CCTTC 5 cut(s) 106, 429, 516, 525, 731
HpyCH4III ACNGT 2 cut(s) 111, 194
HpyCH4V TGCA 3 cut(s) 46, 175, 774
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 386, 625, 847
HpyF3I CTNAG 5 cut(s) 9, 248, 372, 683, 842
Hsp92II CATG 1 cut(s) 770
HspAI GCGC 1 cut(s) 714
Kzo9I GATC 4 cut(s) 499, 676, 753, 781
LmnI GCTCC 1 cut(s) 254
LweI GCATC 2 cut(s) 55, 463
MalI GATC 4 cut(s) 501, 678, 755, 783
MboI GATC 4 cut(s) 499, 676, 753, 781
MboII GAAGA 5 cut(s) 320, 356, 455, 567, 842
MflI RGATCY 1 cut(s) 676
MlsI TGGCCA 1 cut(s) 154
MluCI AATT 9 cut(s) 177, 187, 229, 268, 356, 687, 741, 775, 864
MluNI TGGCCA 1 cut(s) 154
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 7 cut(s) 18, 70, 245, 367, 582, 667, 729
Mox20I TGGCCA 1 cut(s) 154
Mph1103I ATGCAT 1 cut(s) 48
MscI TGGCCA 1 cut(s) 154
MseI TTAA 2 cut(s) 543, 690
MslI CAYNNNNRTG 2 cut(s) 438, 543
Msp20I TGGCCA 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 26
MwoI GCNNNNNNNGC 4 cut(s) 10, 386, 625, 847
NdeII GATC 4 cut(s) 499, 676, 753, 781
NlaIII CATG 1 cut(s) 770
NlaIV GGNNCC 1 cut(s) 81
NmeAIII GCCGAG 1 cut(s) 612
NsiI ATGCAT 1 cut(s) 48
PaeR7I CTCGAG 1 cut(s) 799
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 6, 213
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PspFI CCCAGC 2 cut(s) 22, 26
PspN4I GGNNCC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 2 cut(s) 274, 667
RsaNI GTAC 2 cut(s) 273, 666
RseI CAYNNNNRTG 2 cut(s) 438, 543
SaqAI TTAA 2 cut(s) 543, 690
SatI GCNGC 2 cut(s) 5, 212
Sau3AI GATC 4 cut(s) 499, 676, 753, 781
SchI GAGTC 1 cut(s) 362
SfaNI GCATC 2 cut(s) 55, 463
SfcI CTRYAG 2 cut(s) 258, 651
Sfr274I CTCGAG 1 cut(s) 799
SlaI CTCGAG 1 cut(s) 799
SmiMI CAYNNNNRTG 2 cut(s) 438, 543
SmlI CTYRAG 3 cut(s) 74, 722, 799
SmoI CTYRAG 3 cut(s) 74, 722, 799
Sse9I AATT 9 cut(s) 177, 187, 229, 268, 356, 687, 741, 775, 864
SsiI CCGC 2 cut(s) 212, 628
SspI AATATT 1 cut(s) 484
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 2 cut(s) 111, 194
TaqI TCGA 4 cut(s) 632, 710, 756, 800
TasI AATT 9 cut(s) 177, 187, 229, 268, 356, 687, 741, 775, 864
TatI WGTACW 2 cut(s) 272, 665
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 543, 690
Tru9I TTAA 2 cut(s) 543, 690
TscAI CASTG 1 cut(s) 560
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 456, 596, 611
TspRI CASTG 1 cut(s) 560
XapI RAATTY 1 cut(s) 177
XhoI CTCGAG 1 cut(s) 799
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.