Rh4CG175200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014714
Physical Location & Seq
Reverse (-)
38079500 .. 38084532
5033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG175200.1

Sequence Viewer

Length: 969 bp
ATGCCATCTCAGCAGAAAAACCCACCTGGGGACTCGCAACCTCTGCCGCCCCAGCCACAATTAGCTTCGAATCATAGTCACGCTCAACCCGACAAGCCTCCATTCTCTATAAGACAGCATGTTCTTGCTTGTCGTCAGAGAGATGTCATTTCTAACTGGCCATTTCCAAAGAAATACTTGCATATGTGTCTCAGTCGCGGTATCAAGGAGGTGTTGCCACCGCTTGAGTCCCATAAATCAGCTCTGCAATCAATTAGAGGAGTTGTGAGTTTGAATTGTGCTCAGCAAGAACATAAGGATGATGATCATCTCTTTCGAAACAAATCATTGGATACTGTTGTGCAGGAGAATGAATGTGAATGTGTATTGAACACTGAGCCATCAATATCAGAATTTTCGATCCAGTATTGCCCTTCTTCTCCCTTAAATAGAAGTCATGAGACTAATTTAAGTCATGAAGTTGCTTCCAGTTCCATTTTCATATGTTCAACAGATCAACCTTCAGCTACAATACCAAGCTCACAAAACAAGAATGGTTTTAGTCCCCATGTTGCTTCCAGTTCCAGTGTCGTAGTTTCAACAGATCAACCTTCAACTTCAATACAAACTACAACTACGTTGACTTCTATTAGGAAGCTGAGTCGTAAGGAAAGACGACGTAATGGTAAGCAGAAGAAGCGGACGATGGCTGATATTTTAGATGTAGCTAAGCCATGTACAGCAGAGGATCTTCTTAGGATTAAAAGATTGTGCTGTGTTTCAAGCAACTCTCTTGAGCTGGGGGGTGAAGGAACGAAATGTATCGTTGATGATGAGAATAATTGTGAATCTGACCTAACCAAGGATTACTCAAGTGAAAAACTTGAAAGAGATTGTGAAGCAGCTAATCTCAGTATGCAATCCAGACAAAGATTGGTGGTGAAGTTCAATTTTAGCGGACGTGAATCCAATGTCCAAAGCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

35.86

Weight (kDa)

8.19

Isoelectric Point (pI)

60.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g12430 FvH4_4g12430
malus_domestica MD04G1026500.v1.1
prunus_persica Prupe.1G176100_v2.0.a1 Prupe.1G176100_v2.0.a1
pyrus_communis pycom04g02260
rosa_chinensis RchiOBHm_Chr4g0410661
rosa_laevigata RLG00000008408
rosa_multiflora Rmu_ssc0000072.1_g000017
rosa_roxburghii Rroxscaffold_5G00355440
rosa_rugosa Rorug04G0111600 Rorug04G0111700
rosa_samantha Rh4AG162200 Rh4BG161200 Rh4CG175200 Rh4DG158000
rosa_wichuraiana Rw4G013530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 198
AciI CCGC 5 cut(s) 47, 198, 221, 679, 936
AclWI GGATC 2 cut(s) 394, 735
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 392
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 1 cut(s) 718
AfiI CCNNNNNNNGG 2 cut(s) 28, 841
AgsI TTSAA 9 cut(s) 274, 370, 489, 579, 594, 600, 762, 866, 928
AjiI CACGTC 1 cut(s) 941
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 8 cut(s) 65, 242, 506, 519, 637, 707, 778, 884
AluI AGCT 8 cut(s) 65, 242, 506, 519, 637, 707, 778, 884
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 2 cut(s) 194, 434
AlwI GGATC 2 cut(s) 394, 735
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 881
ApoI RAATTY 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 797, 931
AsuII TTCGAA 2 cut(s) 68, 316
BaeI ACNNNNGTAYC 2 cut(s) 324, 357
BalI TGGCCA 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 893
BccI CCATC 3 cut(s) 13, 388, 679
BciT130I CCWGG 1 cut(s) 27
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 194, 434
BfuI GTATCC 1 cut(s) 325
BisI GCNGC 2 cut(s) 47, 882
BlpI GCTNAGC 2 cut(s) 282, 708
BlsI GCNGC 2 cut(s) 48, 883
Bme1390I CCNGG 1 cut(s) 27
BmgBI CACGTC 1 cut(s) 941
BmrFI CCNGG 1 cut(s) 27
Bpu1102I GCTNAGC 2 cut(s) 282, 708
Bpu14I TTCGAA 2 cut(s) 68, 316
BpuEI CTTGAG 3 cut(s) 245, 794, 835
BsaBI GATNNNNATC 2 cut(s) 303, 306
BsaJI CCNNGG 2 cut(s) 26, 840
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 841
Bse1I ACTGG 5 cut(s) 161, 403, 468, 558, 564
Bse8I GATNNNNATC 2 cut(s) 303, 306
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 26, 840
BseGI GGATG 1 cut(s) 304
BseJI GATNNNNATC 2 cut(s) 303, 306
BseLI CCNNNNNNNGG 2 cut(s) 28, 841
BseMII CTCAG 6 cut(s) 23, 205, 296, 366, 629, 904
BseNI ACTGG 5 cut(s) 161, 403, 468, 558, 564
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 893
BseYI CCCAGC 2 cut(s) 51, 778
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 283
BslFI GGGAC 3 cut(s) 44, 214, 528
BslI CCNNNNNNNGG 2 cut(s) 28, 841
BsmAI GTCTC 2 cut(s) 194, 434
BsmFI GGGAC 3 cut(s) 44, 214, 528
BsnI GGCC 1 cut(s) 160
Bsp119I TTCGAA 2 cut(s) 68, 316
Bsp1286I GDGCHC 1 cut(s) 283
Bsp1407I TGTACA 1 cut(s) 716
Bsp143I GATC 5 cut(s) 304, 399, 493, 583, 727
Bsp1720I GCTNAGC 2 cut(s) 282, 708
BspACI CCGC 5 cut(s) 47, 198, 221, 679, 936
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 6 cut(s) 22, 204, 295, 367, 630, 903
BspFNI CGCG 1 cut(s) 198
BspHI TCATGA 2 cut(s) 436, 454
BspPI GGATC 2 cut(s) 394, 735
BspT104I TTCGAA 2 cut(s) 68, 316
BsrGI TGTACA 1 cut(s) 716
BsrI ACTGG 5 cut(s) 161, 403, 468, 558, 564
BssECI CCNNGG 2 cut(s) 26, 840
BssMI GATC 5 cut(s) 304, 399, 493, 583, 727
BssT1I CCWWGG 1 cut(s) 840
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 337
BstAPI GCANNNNNTGC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 716
BstBI TTCGAA 2 cut(s) 68, 316
BstDEI CTNAG 8 cut(s) 9, 191, 282, 375, 638, 708, 734, 890
BstENI CCTNNNNNAGG 1 cut(s) 839
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 198
BstKTI GATC 5 cut(s) 307, 402, 496, 586, 730
BstMAI GTCTC 2 cut(s) 194, 434
BstMBI GATC 5 cut(s) 304, 399, 493, 583, 727
BstMWI GCNNNNNNNGC 4 cut(s) 10, 43, 52, 676
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 25
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 893
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 160
BtrI CACGTC 1 cut(s) 941
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 372, 571
CciI TCATGA 2 cut(s) 436, 454
Csp6I GTAC 1 cut(s) 717
CviAII CATG 5 cut(s) 119, 437, 455, 548, 714
CviQI GTAC 1 cut(s) 717
DdeI CTNAG 8 cut(s) 9, 191, 282, 375, 638, 708, 734, 890
DpnI GATC 5 cut(s) 306, 401, 495, 585, 729
DpnII GATC 5 cut(s) 304, 399, 493, 583, 727
EaeI YGGCCR 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 840
Eco57I CTGAAG 1 cut(s) 486
EcoNI CCTNNNNNAGG 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 840
ErhI CCWWGG 1 cut(s) 840
FaeI CATG 5 cut(s) 122, 440, 458, 551, 717
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 3 cut(s) 44, 214, 528
FatI CATG 5 cut(s) 118, 436, 454, 547, 713
FauNDI CATATG 2 cut(s) 183, 482
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 47, 882
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 2 cut(s) 47, 882
GluI GCNGC 2 cut(s) 47, 882
GsaI CCCAGC 2 cut(s) 55, 782
HaeIII GGCC 1 cut(s) 160
Hin1II CATG 5 cut(s) 122, 440, 458, 551, 717
HincII GTYRAC 1 cut(s) 621
HindII GTYRAC 1 cut(s) 621
HinfI GANTC 6 cut(s) 32, 70, 227, 640, 827, 944
HphI GGTGA 2 cut(s) 797, 931
Hpy166II GTNNAC 1 cut(s) 621
Hpy188I TCNGA 3 cut(s) 138, 391, 832
Hpy188III TCNNGA 4 cut(s) 437, 455, 773, 903
Hpy8I GTNNAC 1 cut(s) 621
Hpy99I CGWCG 1 cut(s) 660
HpyAV CCTTC 4 cut(s) 423, 510, 600, 782
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 3 cut(s) 617, 658, 940
HpyCH4V TGCA 4 cut(s) 181, 247, 343, 898
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 43, 52, 676
HpyF3I CTNAG 8 cut(s) 9, 191, 282, 375, 638, 708, 734, 890
HpySE526I ACGT 3 cut(s) 617, 658, 940
Hsp92II CATG 5 cut(s) 122, 440, 458, 551, 717
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 5 cut(s) 304, 399, 493, 583, 727
Lsp1109I GCAGC 1 cut(s) 893
MaeII ACGT 3 cut(s) 617, 658, 940
MaeIII GTNAC 1 cut(s) 77
MalI GATC 5 cut(s) 306, 401, 495, 585, 729
MboI GATC 5 cut(s) 304, 399, 493, 583, 727
MboII GAAGA 3 cut(s) 408, 685, 722
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 7 cut(s) 59, 252, 274, 392, 445, 820, 928
MluNI TGGCCA 1 cut(s) 160
MlyI GAGTC 3 cut(s) 26, 236, 649
MnlI CCTC 5 cut(s) 51, 108, 202, 251, 718
Mox20I TGGCCA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 160
MseI TTAA 3 cut(s) 425, 449, 741
MslI CAYNNNNRTG 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 4 cut(s) 10, 43, 52, 676
NdeI CATATG 2 cut(s) 183, 482
NdeII GATC 5 cut(s) 304, 399, 493, 583, 727
NlaIII CATG 5 cut(s) 122, 440, 458, 551, 717
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 2 cut(s) 68, 316
PagI TCATGA 2 cut(s) 436, 454
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 3 cut(s) 70, 827, 944
PkrI GCNGC 2 cut(s) 48, 883
PleI GAGTC 3 cut(s) 26, 235, 648
PpsI GAGTC 3 cut(s) 26, 235, 648
Psp6I CCWGG 1 cut(s) 25
PspFI CCCAGC 2 cut(s) 51, 778
PspGI CCWGG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 727
RsaI GTAC 1 cut(s) 718
RsaNI GTAC 1 cut(s) 717
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 3 cut(s) 425, 449, 741
SatI GCNGC 2 cut(s) 47, 882
Sau3AI GATC 5 cut(s) 304, 399, 493, 583, 727
SchI GAGTC 3 cut(s) 26, 236, 649
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 283
SfuI TTCGAA 2 cut(s) 68, 316
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 3 cut(s) 224, 773, 850
SmoI CTYRAG 3 cut(s) 224, 773, 850
Sse9I AATT 7 cut(s) 59, 252, 274, 392, 445, 820, 928
SsiI CCGC 5 cut(s) 47, 198, 221, 679, 936
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 840
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 3 cut(s) 620, 661, 943
TaqI TCGA 3 cut(s) 68, 316, 398
TasI AATT 7 cut(s) 59, 252, 274, 392, 445, 820, 928
TatI WGTACW 1 cut(s) 716
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 3 cut(s) 70, 827, 944
Tru1I TTAA 3 cut(s) 425, 449, 741
Tru9I TTAA 3 cut(s) 425, 449, 741
TscAI CASTG 2 cut(s) 379, 571
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 881
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 366, 469, 471
TspRI CASTG 2 cut(s) 379, 571
XagI CCTNNNNNAGG 1 cut(s) 839
XapI RAATTY 1 cut(s) 392
XceI RCATGY 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.