FvH4_4g12810

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013911
Physical Location & Seq
Reverse (-)
16478280 .. 16480258
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12810.t1

Sequence Viewer

Length: 930 bp
ATGTCGCTTCAGTCTCGGCCACACATATACAGAGCAAGGAAACTAGAAAAAGAGCCTCTATTGAGGCATGTCGACGAAGAAAAACTAGTTGTTTCTAATCAAGATGATCATCATGCTGATAATGTCGATGATGATCAAGAAGAGAGAAAATATTCGTGTTTTCGTTATTTGGGGTATCTGTTGGAGCTGCCTCTGTCGTTGCCTAGAAGATTGACCATACCAGTTGTGAGCGAGGAAAACTGGTCCAAGCCATTTCTAGTTATTTCAGCGACTCTTGCACCAGTTTCACTCGCAGCTCTTTTCAACACACAGAGTGAACATGTGGGTTCGAGAACTAAATTAGTGGCTTACATAACAGCTGCTATTATTGGTTTGGTTTTTGGAACTCTTGCTTATATCAGCACGAAAAGGTCAGGGCCACCAAACAATAGCAAGCACTTGTTCCCTTTGCTTGTGGGAGGGTTTGTGATGAGCGTGGCCTGGACTTATCTCACAGCTGAAGAATTGGTGTGTTTGTTAGAATCGTATGGAAAAATATTGGGGATTAATCCTTCCATTCTGGGACTTACTATTCTGGCTTGGGGCAACTCTCTGGGAGACTTGATAGCTAATGTGGCCGTGGCGGCTAACGGTGGGGCTGACGGAGCTCAGATTGCCATCACGGGATGCTACGCCGGGCCGATGTTCAACACAGTGGTGGGAGTGGGGGTTTCGCTGGTTCTGTCAGCTTGGTCGGAGTACCCATCCTCATACGTTATCGCAATCGATCATTCTCTATACGAGACACTGGCATTTCTGATGGGTGGGTTGCTGTGGGCGCTTGTCATGTTGCCGAACAAGAACATGAAGCTGGATCGTTATATGGGGAGTGGCCTCATCGCAATCTACTTGTGTTTTCTCTCTCTCAAGCTAGCCTTGCTCCTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

310

Amino Acids

33.79

Weight (kDa)

6.16

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 151 - 303 3.7e-29 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013911)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17860 AT5G17860
fragaria_vesca FvH4_4g12810
malus_domestica MD12G1011500.v1.1
prunus_persica Prupe.7G014900_v2.0.a1 Prupe.7G014900_v2.0.a1
pyrus_communis pycom12g00900
rosa_chinensis RchiOBHm_Chr3g0496071
rosa_laevigata RLG00000022565
rosa_multiflora Rmu_sc0005781.1_g000006
rosa_roxburghii Rroxscaffold_6G00389590
rosa_rugosa Rorug03G0279300
rosa_samantha Rh3AG326400 Rh3BG362700 Rh3CG358800 Rh3DG362100
rosa_wichuraiana Rw3G028580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 72
AciI CCGC 1 cut(s) 623
AclWI GGATC 1 cut(s) 861
AcoI YGGCCR 2 cut(s) 17, 615
AcuI CTGAAG 1 cut(s) 519
AdeI CACNNNGTG 1 cut(s) 314
AfaI GTAC 1 cut(s) 740
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 2 cut(s) 304, 688
AhlI ACTAGT 1 cut(s) 85
AjnI CCWGG 1 cut(s) 479
AleI CACNNNNGTG 1 cut(s) 695
AluBI AGCT 9 cut(s) 187, 296, 359, 497, 608, 647, 728, 850, 910
AluI AGCT 9 cut(s) 187, 296, 359, 497, 608, 647, 728, 850, 910
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 3 cut(s) 18, 591, 776
AlwI GGATC 1 cut(s) 861
AoxI GGCC 6 cut(s) 17, 416, 477, 615, 677, 871
ApeKI GCWGC 3 cut(s) 187, 293, 359
AseI ATTAAT 1 cut(s) 546
Asp700I GAANNNNTTC 1 cut(s) 151
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 3 cut(s) 243, 416, 677
AsuC2I CCSGG 1 cut(s) 676
AsuNHI GCTAGC 1 cut(s) 910
AvaII GGWCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 649
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 3 cut(s) 174, 305, 346
BccI CCATC 3 cut(s) 665, 751, 793
BceAI ACGGC 1 cut(s) 602
BciT130I CCWGG 1 cut(s) 481
BclI TGATCA 2 cut(s) 106, 133
BcnI CCSGG 1 cut(s) 676
BcoDI GTCTC 3 cut(s) 18, 591, 776
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 5 cut(s) 44, 86, 204, 257, 911
BfoI RGCGCY 1 cut(s) 821
BglI GCCNNNNNGGC 1 cut(s) 623
BisI GCNGC 4 cut(s) 188, 294, 360, 624
BlsI GCNGC 4 cut(s) 189, 295, 361, 625
Bme1390I CCNGG 2 cut(s) 481, 676
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 3 cut(s) 243, 416, 677
BmrFI CCNGG 2 cut(s) 481, 676
BmsI GCATC 1 cut(s) 656
BmtI GCTAGC 1 cut(s) 914
BpuEI CTTGAG 1 cut(s) 890
BpuMI CCSGG 1 cut(s) 676
Bsa29I ATCGAT 1 cut(s) 765
BsaBI GATNNNNATC 3 cut(s) 108, 132, 656
BsaJI CCNNGG 1 cut(s) 618
BsaXI ACNNNNNCTCC 4 cut(s) 450, 480, 693, 723
Bse1I ACTGG 4 cut(s) 221, 245, 281, 792
Bse8I GATNNNNATC 3 cut(s) 108, 132, 656
BseBI CCWGG 1 cut(s) 481
BseCI ATCGAT 1 cut(s) 765
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 2 cut(s) 671, 743
BseJI GATNNNNATC 3 cut(s) 108, 132, 656
BseMII CTCAG 1 cut(s) 662
BseNI ACTGG 4 cut(s) 221, 245, 281, 792
BseXI GCAGC 3 cut(s) 174, 305, 346
BshFI GGCC 6 cut(s) 19, 418, 479, 617, 679, 873
BshVI ATCGAT 1 cut(s) 765
BsiHKAI GWGCWC 1 cut(s) 649
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 1 cut(s) 576
BsmAI GTCTC 3 cut(s) 18, 591, 776
BsmFI GGGAC 1 cut(s) 576
BsnI GGCC 6 cut(s) 19, 418, 479, 617, 679, 873
Bsp1286I GDGCHC 1 cut(s) 649
Bsp143I GATC 4 cut(s) 106, 133, 766, 853
BspACI CCGC 1 cut(s) 623
BspANI GGCC 6 cut(s) 19, 418, 479, 617, 679, 873
BspCNI CTCAG 1 cut(s) 661
BspDI ATCGAT 1 cut(s) 765
BspOI GCTAGC 1 cut(s) 914
BspPI GGATC 1 cut(s) 861
BsrI ACTGG 4 cut(s) 221, 245, 281, 792
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 4 cut(s) 106, 133, 766, 853
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 2 cut(s) 632, 694
Bst6I CTCTTC 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 434, 912
BstDEI CTNAG 1 cut(s) 648
BstDSI CCRYGG 1 cut(s) 618
BstF5I GGATG 2 cut(s) 671, 743
BstH2I RGCGCY 1 cut(s) 821
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 4 cut(s) 109, 136, 769, 856
BstMAI GTCTC 3 cut(s) 18, 591, 776
BstMBI GATC 4 cut(s) 106, 133, 766, 853
BstMWI GCNNNNNNNGC 7 cut(s) 275, 614, 623, 644, 653, 817, 916
BstNI CCWGG 1 cut(s) 481
BstNSI RCATGY 2 cut(s) 71, 323
BstSCI CCNGG 2 cut(s) 479, 674
BstV1I GCAGC 3 cut(s) 174, 305, 346
Bsu15I ATCGAT 1 cut(s) 765
BsuRI GGCC 6 cut(s) 19, 418, 479, 617, 679, 873
BsuTUI ATCGAT 1 cut(s) 765
BtgI CCRYGG 1 cut(s) 618
BtgZI GCGATG 1 cut(s) 862
BtsCI GGATG 2 cut(s) 671, 743
BtsIMutI CAGTG 2 cut(s) 699, 785
Cac8I GCNNGC 2 cut(s) 434, 912
CfoI GCGC 1 cut(s) 820
Cfr13I GGNCC 3 cut(s) 243, 416, 677
ClaI ATCGAT 1 cut(s) 765
Csp6I GTAC 1 cut(s) 739
CviAII CATG 5 cut(s) 68, 113, 320, 826, 844
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 1 cut(s) 648
DpnI GATC 4 cut(s) 108, 135, 768, 855
DpnII GATC 4 cut(s) 106, 133, 766, 853
DraIII CACNNNGTG 1 cut(s) 314
EaeI YGGCCR 2 cut(s) 17, 615
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 519
EcoICRI GAGCTC 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 479
EcoT38I GRGCYC 1 cut(s) 649
FaeI CATG 5 cut(s) 71, 116, 323, 829, 847
FalI AAGNNNNNCTT 1 cut(s) 899
FaqI GGGAC 1 cut(s) 576
FatI CATG 5 cut(s) 67, 112, 319, 825, 843
FbaI TGATCA 2 cut(s) 106, 133
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 4 cut(s) 188, 294, 360, 624
FokI GGATG 2 cut(s) 678, 730
FriOI GRGCYC 1 cut(s) 649
Fsp4HI GCNGC 4 cut(s) 188, 294, 360, 624
FspBI CTAG 5 cut(s) 44, 86, 204, 257, 911
GlaI GCGC 1 cut(s) 819
GluI GCNGC 4 cut(s) 188, 294, 360, 624
HaeII RGCGCY 1 cut(s) 821
HaeIII GGCC 6 cut(s) 19, 418, 479, 617, 679, 873
HapII CCGG 1 cut(s) 675
HhaI GCGC 1 cut(s) 820
Hin1II CATG 5 cut(s) 71, 116, 323, 829, 847
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 2 cut(s) 271, 521
HpaII CCGG 1 cut(s) 675
Hpy166II GTNNAC 2 cut(s) 73, 317
Hpy188I TCNGA 4 cut(s) 651, 736, 798, 929
Hpy188III TCNNGA 3 cut(s) 101, 137, 330
Hpy8I GTNNAC 2 cut(s) 73, 317
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 561
HpyCH4III ACNGT 2 cut(s) 632, 694
HpyCH4IV ACGT 1 cut(s) 753
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 7 cut(s) 275, 614, 623, 644, 653, 817, 916
HpyF3I CTNAG 1 cut(s) 648
HpySE526I ACGT 1 cut(s) 753
Hsp92II CATG 5 cut(s) 71, 116, 323, 829, 847
HspAI GCGC 1 cut(s) 818
Ksp22I TGATCA 2 cut(s) 106, 133
Kzo9I GATC 4 cut(s) 106, 133, 766, 853
LmnI GCTCC 3 cut(s) 184, 644, 924
Lsp1109I GCAGC 3 cut(s) 174, 305, 346
LweI GCATC 1 cut(s) 656
MaeI CTAG 5 cut(s) 44, 86, 204, 257, 911
MaeII ACGT 1 cut(s) 753
MalI GATC 4 cut(s) 108, 135, 768, 855
MboI GATC 4 cut(s) 106, 133, 766, 853
MboII GAAGA 4 cut(s) 89, 152, 219, 512
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 2 cut(s) 338, 503
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 2 cut(s) 162, 714
MnlI CCTC 7 cut(s) 57, 66, 201, 226, 452, 757, 884
MroXI GAANNNNTTC 1 cut(s) 151
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 695
MspA1I CMGCKG 2 cut(s) 359, 497
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 2 cut(s) 481, 676
MvaI CCWGG 1 cut(s) 481
MwoI GCNNNNNNNGC 7 cut(s) 275, 614, 623, 644, 653, 817, 916
NciI CCSGG 1 cut(s) 676
NdeII GATC 4 cut(s) 106, 133, 766, 853
NheI GCTAGC 1 cut(s) 910
NlaIII CATG 5 cut(s) 71, 116, 323, 829, 847
NspI RCATGY 2 cut(s) 71, 323
OliI CACNNNNGTG 1 cut(s) 695
PciI ACATGT 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 521
PkrI GCNGC 4 cut(s) 189, 295, 361, 625
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PscI ACATGT 1 cut(s) 319
PshBI ATTAAT 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 649
Psp6I CCWGG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 479
PspPI GGNCC 3 cut(s) 243, 416, 677
PvuII CAGCTG 2 cut(s) 359, 497
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
RseI CAYNNNNRTG 1 cut(s) 695
SacI GAGCTC 1 cut(s) 649
SalI GTCGAC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 4 cut(s) 188, 294, 360, 624
Sau3AI GATC 4 cut(s) 106, 133, 766, 853
Sau96I GGNCC 3 cut(s) 243, 416, 677
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 481, 676
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 1 cut(s) 656
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 905
SmoI CTYRAG 1 cut(s) 905
SpeI ACTAGT 1 cut(s) 85
Sse9I AATT 2 cut(s) 338, 503
SsiI CCGC 1 cut(s) 623
SspI AATATT 2 cut(s) 152, 537
SspMI CTAG 5 cut(s) 44, 86, 204, 257, 911
SstI GAGCTC 1 cut(s) 649
StyD4I CCNGG 2 cut(s) 479, 674
TaaI ACNGT 2 cut(s) 632, 694
TaiI ACGT 1 cut(s) 756
TaqI TCGA 4 cut(s) 72, 126, 329, 765
TasI AATT 2 cut(s) 338, 503
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 2 cut(s) 699, 792
TseI GCWGC 3 cut(s) 187, 293, 359
TspDTI ATGAA 1 cut(s) 860
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 2 cut(s) 699, 792
VpaK11BI GGWCC 1 cut(s) 243
VspI ATTAAT 1 cut(s) 546
XceI RCATGY 2 cut(s) 71, 323
XmiI GTMKAC 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 151
XspI CTAG 5 cut(s) 44, 86, 204, 257, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.