Rroxscaffold_6G00389590

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013911
Physical Location & Seq
Reverse (-)
3517471 .. 3519347
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389590.1

Sequence Viewer

Length: 1716 bp
ATGGCTGGCTCAACCTCCAGTTCTACACTCAAGAAACTCGCTCTATTCCTCAACATATCCTTTCTCTTTCTCCTCTTATGTCTCTGTCTTACAACTACTAATTATCTCCATCCCAATAATCACAGCTCAACCTTACCAAACCAGTCCACTATTCTTCATGCCACCATAGTTGATGATGGCTGCAGTAAACTCCATGAACACCCAGATTTTGAAACCAAGTGTTTGTATGTCAAAACCCAAATAGGTTGCAGACCTGATGGTTACTTAAACTATCTCCAAATCTTTTATTGCAACTTTGGCCAGTTCCCAATAATAGCCCATGTTGCAATTCTACTTTGGCTTCTTGTTTTGTTCTACCTCTTGGGGAACACAGCTGCCAATTACTTCTGCTCCTCCTTAGAGAGCTTGTCCAAAATCTTGAAGCTCTCTCCCACCATTGCCGGAGTGACCCTCCTTTCTCTCGGAAATGGCGCCCCGGATGTCTTTTCGAGCATCGTTTCTTTCACGGGATCAGGTGATGGTGATGTCGGCCTAAACAGTGTGTTGGGGGGAGCCTTCTTTGTGTCTACTATTGTGGTAGGTCTCATTAGCATACTAACTAGCCATCAACAAGTGTCAGTTGACAAGTCCAGCTTCATAAGAGATGTCATCTTTTTCTTATTCTCCCTCTCCTCTCTTCTTGTGATCATAGCGATCGGAAGAATCAATTTGTGGGGTTCCATTGCTTTTGTTGCTATTTACTTCGTCTATGTCGGTTCAGTCTCATCCACACACATATACAACGTAAGGAAATTAGAAAGAGAAAGAGACCAATTATTAGTTCTCGGAGACACTACCACTAGTCCTTTATTGGGGCATGTCGTCGAAGAAAAAGTAGTTGTTTCTGTTCAAGATGATGATGATAAAGATGGTATCGATGATCAAGAACGGAAACTATATTCGTCTTTTGGTTATTTGGGGTATCTGTTGGAGCTGCCTCTGTCGTTGCCTAGAAGATTGACCATACCGGTTGTGAGCGAGGAAAATTGGTCCAAGCCATTTGCAGTTATTTCTGTGACTTTGGCACCAATGTCACTCGCTGCCCTTTTCAACACACAGGCTGAAAATGTGGGTTCCAGAACTAAATTAGTGGCTTACATAACAGCAGCTATTACTGGTTTGGTTCTTGGTAATCTTGCTTATTTGAGCACGAAAAAGTCAGGGCCACCAAACAATAACAAGTACTTGTTCCCATGGCTTGTGGGAGGGTTTGTGATGAGTGTGGCCTGGACTTACCTCACTGCTGAAGAACTGGTGTGTTTGTTAGAGTCGTATGGGAATATATTGGGGATTAGTCCTTCCATTCTGGGACTTACTATTCTGGCTTGGGGTAACTCTCTCGGAGATTTGATAGCTAATGTGGCCATGGCGGTTAACGGTGGGGCAGACGGAGCCCAGATTGCTATTACTGGCTGCTACGCCGGGCCGATGTTCAACACACTGGTGGGATTGGGGTTCTCACTGGTTTTGTCAGCTTGGAAGGAGTATCCATCCTCATACGTCATTGTTATCGACCATTCTCTGTACGAGACGGTGGCCTTTCTGATGGGGGGGTTGCTCTGGGCGCTTGCCGTGTTGCCAAACAAGAATATGAAGCTGGATCGTTATATGGGGAGTGGCCTAATCGCAATCTACTTGTGTTTTCTGTCTCTGAAGCTAGCCATGCTGCTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

571

Amino Acids

61.92

Weight (kDa)

5.81

Isoelectric Point (pI)

27.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 111 - 251 2.2e-27 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 413 - 565 4.7e-29 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013911)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17860 AT5G17860
fragaria_vesca FvH4_4g12810
malus_domestica MD12G1011500.v1.1
prunus_persica Prupe.7G014900_v2.0.a1 Prupe.7G014900_v2.0.a1
pyrus_communis pycom12g00900
rosa_chinensis RchiOBHm_Chr3g0496071
rosa_laevigata RLG00000022565
rosa_multiflora Rmu_sc0005781.1_g000006
rosa_roxburghii Rroxscaffold_6G00389590
rosa_rugosa Rorug03G0279300
rosa_samantha Rh3AG326400 Rh3BG362700 Rh3CG358800 Rh3DG362100
rosa_wichuraiana Rw3G028580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 470, 1063
AccI GTMKAC 1 cut(s) 566
AciI CCGC 1 cut(s) 1409
AclWI GGATC 2 cut(s) 517, 1647
AcoI YGGCCR 2 cut(s) 298, 1401
AcuI CTGAAG 2 cut(s) 1305, 1712
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 2 cut(s) 1223, 1565
AfiI CCNNNNNNNGG 1 cut(s) 851
AgeI ACCGGT 1 cut(s) 1006
AgsI TTSAA 5 cut(s) 212, 421, 890, 1090, 1474
AhlI ACTAGT 1 cut(s) 839
AjnI CCWGG 1 cut(s) 1265
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
AleI CACNNNNGTG 1 cut(s) 1481
Alw21I GWGCWC 1 cut(s) 1190
Alw26I GTCTC 7 cut(s) 86, 587, 766, 801, 822, 1562, 1692
AlwI GGATC 2 cut(s) 517, 1647
AoxI GGCC 8 cut(s) 298, 529, 1202, 1263, 1401, 1463, 1575, 1657
ApeKI GCWGC 8 cut(s) 180, 374, 973, 1079, 1145, 1452, 1705, 1708
AsiGI ACCGGT 1 cut(s) 1006
AspLEI GCGC 2 cut(s) 473, 1606
AspS9I GGNCC 3 cut(s) 1029, 1202, 1463
AsuC2I CCSGG 2 cut(s) 476, 1462
AsuHPI GGTGA 2 cut(s) 527, 533
AsuNHI GCTAGC 1 cut(s) 1696
AvaII GGWCC 1 cut(s) 1029
BalI TGGCCA 2 cut(s) 300, 1403
BanI GGYRCC 2 cut(s) 470, 1063
BanII GRGCYC 1 cut(s) 1435
Bbv12I GWGCWC 1 cut(s) 1190
BbvI GCAGC 8 cut(s) 167, 361, 960, 1066, 1157, 1439, 1692, 1695
BccI CCATC 8 cut(s) 117, 170, 251, 512, 612, 902, 1537, 1579
BceAI ACGGC 1 cut(s) 1595
BciT130I CCWGG 1 cut(s) 1267
BciVI GTATCC 1 cut(s) 1536
BclI TGATCA 2 cut(s) 684, 919
BcnI CCSGG 2 cut(s) 476, 1462
BcoDI GTCTC 7 cut(s) 86, 587, 766, 801, 822, 1562, 1692
BcuI ACTAGT 1 cut(s) 839
BfaI CTAG 4 cut(s) 600, 840, 990, 1697
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 2 cut(s) 474, 1607
BfuI GTATCC 1 cut(s) 1536
BisI GCNGC 8 cut(s) 181, 375, 974, 1080, 1146, 1453, 1706, 1709
BlsI GCNGC 8 cut(s) 182, 376, 975, 1081, 1147, 1454, 1707, 1710
BmcAI AGTACT 1 cut(s) 1223
Bme1390I CCNGG 3 cut(s) 476, 1267, 1462
Bme18I GGWCC 1 cut(s) 1029
BmgT120I GGNCC 3 cut(s) 1029, 1202, 1463
BmiI GGNNCC 6 cut(s) 472, 553, 718, 1065, 1114, 1432
BmrFI CCNGG 3 cut(s) 476, 1267, 1462
BmsI GCATC 1 cut(s) 501
BmtI GCTAGC 1 cut(s) 1700
BplI GAGNNNNNCTC 2 cut(s) 435, 467
BpuEI CTTGAG 1 cut(s) 14
BpuMI CCSGG 2 cut(s) 476, 1462
Bsa29I ATCGAT 1 cut(s) 915
BsaHI GRCGYC 1 cut(s) 471
BsaI GGTCTC 2 cut(s) 587, 801
BsaJI CCNNGG 3 cut(s) 474, 1232, 1404
BsaWI WCCGGW 1 cut(s) 1006
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 1236, 1266
Bsc4I CCNNNNNNNGG 1 cut(s) 851
Bse118I RCCGGY 1 cut(s) 1006
Bse1I ACTGG 8 cut(s) 18, 142, 301, 1159, 1296, 1453, 1485, 1506
Bse3DI GCAATG 2 cut(s) 435, 720
BseBI CCWGG 1 cut(s) 1267
BseCI ATCGAT 1 cut(s) 915
BseDI CCNNGG 3 cut(s) 474, 1232, 1404
BseGI GGATG 4 cut(s) 109, 484, 764, 1529
BseLI CCNNNNNNNGG 1 cut(s) 851
BseMI GCAATG 2 cut(s) 435, 720
BseNI ACTGG 8 cut(s) 18, 142, 301, 1159, 1296, 1453, 1485, 1506
BseRI GAGGAG 3 cut(s) 62, 382, 661
BseXI GCAGC 8 cut(s) 167, 361, 960, 1066, 1157, 1439, 1692, 1695
Bsh1285I CGRYCG 1 cut(s) 696
BshFI GGCC 8 cut(s) 300, 531, 1204, 1265, 1403, 1465, 1577, 1659
BshNI GGYRCC 2 cut(s) 470, 1063
BshTI ACCGGT 1 cut(s) 1006
BshVI ATCGAT 1 cut(s) 915
BsiEI CGRYCG 1 cut(s) 696
BsiHKAI GWGCWC 1 cut(s) 1190
BsiSI CCGG 4 cut(s) 441, 476, 1007, 1461
BslFI GGGAC 1 cut(s) 1362
BslI CCNNNNNNNGG 1 cut(s) 851
BsmAI GTCTC 7 cut(s) 86, 587, 766, 801, 822, 1562, 1692
BsmBI CGTCTC 1 cut(s) 1562
BsmFI GGGAC 1 cut(s) 1362
BsnI GGCC 8 cut(s) 300, 531, 1204, 1265, 1403, 1465, 1577, 1659
Bso31I GGTCTC 2 cut(s) 587, 801
Bsp1286I GDGCHC 2 cut(s) 1190, 1435
Bsp143I GATC 5 cut(s) 509, 684, 693, 919, 1639
Bsp19I CCATGG 2 cut(s) 1232, 1404
BspACI CCGC 1 cut(s) 1409
BspANI GGCC 8 cut(s) 300, 531, 1204, 1265, 1403, 1465, 1577, 1659
BspDI ATCGAT 1 cut(s) 915
BspLI GGNNCC 6 cut(s) 472, 553, 718, 1065, 1114, 1432
BspMAI CTGCAG 1 cut(s) 185
BspOI GCTAGC 1 cut(s) 1700
BspPI GGATC 2 cut(s) 517, 1647
BspT107I GGYRCC 2 cut(s) 470, 1063
BspTNI GGTCTC 2 cut(s) 587, 801
BsrDI GCAATG 2 cut(s) 435, 720
BsrFI RCCGGY 1 cut(s) 1006
BsrI ACTGG 8 cut(s) 18, 142, 301, 1159, 1296, 1453, 1485, 1506
BssAI RCCGGY 1 cut(s) 1006
BssECI CCNNGG 3 cut(s) 474, 1232, 1404
BssMI GATC 5 cut(s) 509, 684, 693, 919, 1639
BssNI GRCGYC 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 1232, 1404
Bst2UI CCWGG 1 cut(s) 1267
Bst4CI ACNGT 3 cut(s) 539, 1418, 1573
Bst6I CTCTTC 1 cut(s) 681
BstACI GRCGYC 1 cut(s) 471
BstC8I GCNNGC 3 cut(s) 7, 1608, 1698
BstDEI CTNAG 1 cut(s) 397
BstDSI CCRYGG 2 cut(s) 1232, 1404
BstF5I GGATG 4 cut(s) 109, 484, 764, 1529
BstH2I RGCGCY 2 cut(s) 474, 1607
BstHHI GCGC 2 cut(s) 473, 1606
BstKTI GATC 5 cut(s) 512, 687, 696, 922, 1642
BstMAI GTCTC 7 cut(s) 86, 587, 766, 801, 822, 1562, 1692
BstMBI GATC 5 cut(s) 509, 684, 693, 919, 1639
BstMCI CGRYCG 1 cut(s) 696
BstMWI GCNNNNNNNGC 8 cut(s) 297, 323, 731, 1400, 1430, 1439, 1603, 1702
BstNI CCWGG 1 cut(s) 1267
BstNSI RCATGY 1 cut(s) 860
BstSCI CCNGG 3 cut(s) 474, 1265, 1460
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 8 cut(s) 167, 361, 960, 1066, 1157, 1439, 1692, 1695
Bsu15I ATCGAT 1 cut(s) 915
BsuI GTATCC 1 cut(s) 1536
BsuRI GGCC 8 cut(s) 300, 531, 1204, 1265, 1403, 1465, 1577, 1659
BsuTUI ATCGAT 1 cut(s) 915
BtgI CCRYGG 2 cut(s) 1232, 1404
BtsCI GGATG 4 cut(s) 109, 484, 764, 1529
BtsI GCAGTG 1 cut(s) 1278
BtsIMutI CAGTG 4 cut(s) 544, 1278, 1478, 1499
Cac8I GCNNGC 3 cut(s) 7, 1608, 1698
CfoI GCGC 2 cut(s) 473, 1606
Cfr10I RCCGGY 1 cut(s) 1006
Cfr13I GGNCC 3 cut(s) 1029, 1202, 1463
ClaI ATCGAT 1 cut(s) 915
Csp6I GTAC 2 cut(s) 1222, 1564
CspAI ACCGGT 1 cut(s) 1006
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 7 cut(s) 158, 194, 320, 857, 1233, 1405, 1702
CviQI GTAC 2 cut(s) 1222, 1564
DdeI CTNAG 1 cut(s) 397
DinI GGCGCC 1 cut(s) 472
DpnI GATC 5 cut(s) 511, 686, 695, 921, 1641
DpnII GATC 5 cut(s) 509, 684, 693, 919, 1639
EaeI YGGCCR 2 cut(s) 298, 1401
Eam1104I CTCTTC 1 cut(s) 681
EarI CTCTTC 1 cut(s) 681
Eco130I CCWWGG 2 cut(s) 1232, 1404
Eco24I GRGCYC 1 cut(s) 1435
Eco31I GGTCTC 2 cut(s) 587, 801
Eco47I GGWCC 1 cut(s) 1029
Eco57I CTGAAG 2 cut(s) 1305, 1712
EcoRII CCWGG 1 cut(s) 1265
EcoT14I CCWWGG 2 cut(s) 1232, 1404
EcoT38I GRGCYC 1 cut(s) 1435
EgeI GGCGCC 1 cut(s) 472
EheI GGCGCC 1 cut(s) 472
ErhI CCWWGG 2 cut(s) 1232, 1404
Esp3I CGTCTC 1 cut(s) 1562
FaeI CATG 7 cut(s) 161, 197, 323, 860, 1236, 1408, 1705
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FaqI GGGAC 1 cut(s) 1362
FatI CATG 7 cut(s) 157, 193, 319, 856, 1232, 1404, 1701
FbaI TGATCA 2 cut(s) 684, 919
FblI GTMKAC 1 cut(s) 566
Fnu4HI GCNGC 8 cut(s) 181, 375, 974, 1080, 1146, 1453, 1706, 1709
FokI GGATG 4 cut(s) 96, 491, 751, 1516
FriOI GRGCYC 1 cut(s) 1435
Fsp4HI GCNGC 8 cut(s) 181, 375, 974, 1080, 1146, 1453, 1706, 1709
FspBI CTAG 4 cut(s) 600, 840, 990, 1697
GlaI GCGC 2 cut(s) 472, 1605
GluI GCNGC 8 cut(s) 181, 375, 974, 1080, 1146, 1453, 1706, 1709
HaeII RGCGCY 2 cut(s) 474, 1607
HaeIII GGCC 8 cut(s) 300, 531, 1204, 1265, 1403, 1465, 1577, 1659
HapII CCGG 4 cut(s) 441, 476, 1007, 1461
HhaI GCGC 2 cut(s) 473, 1606
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 7 cut(s) 161, 197, 323, 860, 1236, 1408, 1705
Hin6I GCGC 2 cut(s) 471, 1604
HinP1I GCGC 2 cut(s) 471, 1604
HincII GTYRAC 2 cut(s) 622, 1414
HindII GTYRAC 2 cut(s) 622, 1414
HinfI GANTC 2 cut(s) 702, 1307
HpaI GTTAAC 1 cut(s) 1414
HpaII CCGG 4 cut(s) 441, 476, 1007, 1461
HphI GGTGA 2 cut(s) 527, 533
Hpy166II GTNNAC 5 cut(s) 147, 188, 567, 622, 1414
Hpy188I TCNGA 7 cut(s) 464, 698, 827, 1382, 1584, 1692, 1715
Hpy188III TCNNGA 5 cut(s) 31, 418, 890, 923, 1116
Hpy8I GTNNAC 5 cut(s) 147, 188, 567, 622, 1414
Hpy99I CGWCG 1 cut(s) 866
HpyAV CCTTC 3 cut(s) 565, 1347, 1513
HpyCH4III ACNGT 3 cut(s) 539, 1418, 1573
HpyCH4IV ACGT 2 cut(s) 783, 1539
HpyCH4V TGCA 5 cut(s) 183, 249, 291, 326, 1043
HpyF10VI GCNNNNNNNGC 8 cut(s) 297, 323, 731, 1400, 1430, 1439, 1603, 1702
HpyF3I CTNAG 1 cut(s) 397
HpySE526I ACGT 2 cut(s) 783, 1539
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 7 cut(s) 161, 197, 323, 860, 1236, 1408, 1705
HspAI GCGC 2 cut(s) 471, 1604
KasI GGCGCC 1 cut(s) 470
Ksp22I TGATCA 2 cut(s) 684, 919
KspAI GTTAAC 1 cut(s) 1414
Kzo9I GATC 5 cut(s) 509, 684, 693, 919, 1639
LmnI GCTCC 4 cut(s) 395, 551, 970, 1430
Lsp1109I GCAGC 8 cut(s) 167, 361, 960, 1066, 1157, 1439, 1692, 1695
LweI GCATC 1 cut(s) 501
MaeI CTAG 4 cut(s) 600, 840, 990, 1697
MaeII ACGT 2 cut(s) 783, 1539
MaeIII GTNAC 5 cut(s) 260, 445, 1054, 1071, 1370
MalI GATC 5 cut(s) 511, 686, 695, 921, 1641
MboI GATC 5 cut(s) 509, 684, 693, 919, 1639
MboII GAAGA 6 cut(s) 146, 668, 711, 878, 1005, 1298
MhlI GDGCHC 2 cut(s) 1190, 1435
MlsI TGGCCA 2 cut(s) 300, 1403
MluCI AATT 8 cut(s) 100, 327, 379, 706, 791, 812, 1024, 1124
MluNI TGGCCA 2 cut(s) 300, 1403
Mly113I GGCGCC 1 cut(s) 471
MlyI GAGTC 1 cut(s) 1316
MmeI TCCRAC 1 cut(s) 948
Mox20I TGGCCA 2 cut(s) 300, 1403
MscI TGGCCA 2 cut(s) 300, 1403
MseI TTAA 2 cut(s) 266, 1413
MslI CAYNNNNRTG 1 cut(s) 1481
Msp20I TGGCCA 2 cut(s) 300, 1403
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 4 cut(s) 441, 476, 1007, 1461
MspR9I CCNGG 3 cut(s) 476, 1267, 1462
MvaI CCWGG 1 cut(s) 1267
MwoI GCNNNNNNNGC 8 cut(s) 297, 323, 731, 1400, 1430, 1439, 1603, 1702
NarI GGCGCC 1 cut(s) 471
NciI CCSGG 2 cut(s) 476, 1462
NcoI CCATGG 2 cut(s) 1232, 1404
NdeII GATC 5 cut(s) 509, 684, 693, 919, 1639
NheI GCTAGC 1 cut(s) 1696
NlaIII CATG 7 cut(s) 161, 197, 323, 860, 1236, 1408, 1705
NlaIV GGNNCC 6 cut(s) 472, 553, 718, 1065, 1114, 1432
NmuCI GTSAC 3 cut(s) 445, 1054, 1071
NspI RCATGY 1 cut(s) 860
OliI CACNNNNGTG 1 cut(s) 1481
PfeI GAWTC 1 cut(s) 702
PinAI ACCGGT 1 cut(s) 1006
PkrI GCNGC 8 cut(s) 182, 376, 975, 1081, 1147, 1454, 1707, 1710
Ple19I CGATCG 1 cut(s) 696
PleI GAGTC 1 cut(s) 1315
PluTI GGCGCC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 1315
Psp6I CCWGG 1 cut(s) 1265
PspGI CCWGG 1 cut(s) 1265
PspN4I GGNNCC 6 cut(s) 472, 553, 718, 1065, 1114, 1432
PspPI GGNCC 3 cut(s) 1029, 1202, 1463
PstI CTGCAG 1 cut(s) 185
PvuI CGATCG 1 cut(s) 696
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 1223, 1565
RsaNI GTAC 2 cut(s) 1222, 1564
RseI CAYNNNNRTG 1 cut(s) 1481
SaqAI TTAA 2 cut(s) 266, 1413
SatI GCNGC 8 cut(s) 181, 375, 974, 1080, 1146, 1453, 1706, 1709
Sau3AI GATC 5 cut(s) 509, 684, 693, 919, 1639
Sau96I GGNCC 3 cut(s) 1029, 1202, 1463
ScaI AGTACT 1 cut(s) 1223
SchI GAGTC 1 cut(s) 1316
ScrFI CCNGG 3 cut(s) 476, 1267, 1462
SduI GDGCHC 2 cut(s) 1190, 1435
SfaNI GCATC 1 cut(s) 501
SfcI CTRYAG 1 cut(s) 181
SfoI GGCGCC 1 cut(s) 472
SinI GGWCC 1 cut(s) 1029
SmiMI CAYNNNNRTG 1 cut(s) 1481
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SpeI ACTAGT 1 cut(s) 839
Sse9I AATT 8 cut(s) 100, 327, 379, 706, 791, 812, 1024, 1124
SsiI CCGC 1 cut(s) 1409
SspDI GGCGCC 1 cut(s) 470
SspMI CTAG 4 cut(s) 600, 840, 990, 1697
StyD4I CCNGG 3 cut(s) 474, 1265, 1460
StyI CCWWGG 2 cut(s) 1232, 1404
TaaI ACNGT 3 cut(s) 539, 1418, 1573
TaiI ACGT 2 cut(s) 786, 1542
TaqI TCGA 4 cut(s) 488, 864, 915, 1551
TasI AATT 8 cut(s) 100, 327, 379, 706, 791, 812, 1024, 1124
TatI WGTACW 1 cut(s) 1221
TfiI GAWTC 1 cut(s) 702
Tru1I TTAA 2 cut(s) 266, 1413
Tru9I TTAA 2 cut(s) 266, 1413
TscAI CASTG 4 cut(s) 544, 1285, 1485, 1506
TseFI GTSAC 3 cut(s) 445, 1054, 1071
TseI GCWGC 8 cut(s) 180, 374, 973, 1079, 1145, 1452, 1705, 1708
Tsp45I GTSAC 3 cut(s) 445, 1054, 1071
TspDTI ATGAA 4 cut(s) 146, 210, 625, 1646
TspGWI ACGGA 2 cut(s) 943, 1443
TspRI CASTG 4 cut(s) 544, 1285, 1485, 1506
VpaK11BI GGWCC 1 cut(s) 1029
XceI RCATGY 1 cut(s) 860
XmiI GTMKAC 1 cut(s) 566
XspI CTAG 4 cut(s) 600, 840, 990, 1697
ZrmI AGTACT 1 cut(s) 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.