variant histone H3 which may replace conventional H3 in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (By similarity)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g13970 |
| pyrus_communis | pycom15g01340 |
| rosa_chinensis | RchiOBHm_Chr7g0210031 |
| rosa_laevigata | RLG00000018273 |
| rosa_multiflora | Rmu_sc0003581.1_g000002 Rmu_sc0004168.1_g000055 Rmu_sc0009286.1_g000007 |
| rosa_samantha | Rh2DG270300 Rh2DG288600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 153 |
| AciI | CCGC | 3 cut(s) | 99, 130, 160 |
| AcoI | YGGCCR | 1 cut(s) | 63 |
| AcsI | RAATTY | 1 cut(s) | 190 |
| AfaI | GTAC | 3 cut(s) | 10, 139, 167 |
| AluBI | AGCT | 3 cut(s) | 47, 184, 206 |
| AluI | AGCT | 3 cut(s) | 47, 184, 206 |
| AoxI | GGCC | 1 cut(s) | 63 |
| ApeKI | GCWGC | 1 cut(s) | 206 |
| ApoI | RAATTY | 1 cut(s) | 190 |
| AsuC2I | CCSGG | 1 cut(s) | 135 |
| BalI | TGGCCA | 1 cut(s) | 65 |
| BbvI | GCAGC | 1 cut(s) | 193 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 5, 39 |
| BclI | TGATCA | 1 cut(s) | 196 |
| BcnI | CCSGG | 1 cut(s) | 135 |
| BfmI | CTRYAG | 1 cut(s) | 245 |
| BisI | GCNGC | 1 cut(s) | 207 |
| BlsI | GCNGC | 1 cut(s) | 208 |
| Bme1390I | CCNGG | 1 cut(s) | 135 |
| BmrFI | CCNGG | 1 cut(s) | 135 |
| BpmI | CTGGAG | 2 cut(s) | 57, 123 |
| BpuMI | CCSGG | 1 cut(s) | 135 |
| BsaJI | CCNNGG | 2 cut(s) | 50, 133 |
| Bse1I | ACTGG | 1 cut(s) | 40 |
| BseDI | CCNNGG | 2 cut(s) | 50, 133 |
| BseMII | CTCAG | 1 cut(s) | 171 |
| BseNI | ACTGG | 1 cut(s) | 40 |
| BseXI | GCAGC | 1 cut(s) | 193 |
| BsgI | GTGCAG | 1 cut(s) | 220 |
| Bsh1236I | CGCG | 1 cut(s) | 153 |
| BshFI | GGCC | 1 cut(s) | 65 |
| BsiSI | CCGG | 1 cut(s) | 135 |
| BsnI | GGCC | 1 cut(s) | 65 |
| Bsp143I | GATC | 1 cut(s) | 196 |
| Bsp68I | TCGCGA | 1 cut(s) | 153 |
| BspACI | CCGC | 3 cut(s) | 99, 130, 160 |
| BspANI | GGCC | 1 cut(s) | 65 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspFNI | CGCG | 1 cut(s) | 153 |
| BspQI | GCTCTTC | 1 cut(s) | 153 |
| BsrI | ACTGG | 1 cut(s) | 40 |
| BssECI | CCNNGG | 2 cut(s) | 50, 133 |
| BssMI | GATC | 1 cut(s) | 196 |
| BssT1I | CCWWGG | 1 cut(s) | 50 |
| Bst4CI | ACNGT | 1 cut(s) | 142 |
| Bst6I | CTCTTC | 2 cut(s) | 50, 153 |
| BstC8I | GCNNGC | 1 cut(s) | 25 |
| BstDEI | CTNAG | 3 cut(s) | 12, 81, 180 |
| BstFNI | CGCG | 1 cut(s) | 153 |
| BstKTI | GATC | 1 cut(s) | 199 |
| BstMBI | GATC | 1 cut(s) | 196 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 159 |
| BstNSI | RCATGY | 1 cut(s) | 31 |
| BstSCI | CCNGG | 1 cut(s) | 133 |
| BstSFI | CTRYAG | 1 cut(s) | 245 |
| BstUI | CGCG | 1 cut(s) | 153 |
| BstV1I | GCAGC | 1 cut(s) | 193 |
| BsuRI | GGCC | 1 cut(s) | 65 |
| BtsIMutI | CAGTG | 1 cut(s) | 177 |
| BtuMI | TCGCGA | 1 cut(s) | 153 |
| Cac8I | GCNNGC | 1 cut(s) | 25 |
| Csp6I | GTAC | 3 cut(s) | 9, 138, 166 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 55, 90 |
| CviAII | CATG | 1 cut(s) | 28 |
| CviJI | RGCY | 7 cut(s) | 5, 47, 65, 118, 184, 206, 221 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 47, 65, 118, 184, 206, 221 |
| CviQI | GTAC | 3 cut(s) | 9, 138, 166 |
| DdeI | CTNAG | 3 cut(s) | 12, 81, 180 |
| DpnI | GATC | 1 cut(s) | 198 |
| DpnII | GATC | 1 cut(s) | 196 |
| EaeI | YGGCCR | 1 cut(s) | 63 |
| Eam1104I | CTCTTC | 2 cut(s) | 50, 153 |
| EarI | CTCTTC | 2 cut(s) | 50, 153 |
| Eco130I | CCWWGG | 1 cut(s) | 50 |
| EcoRI | GAATTC | 1 cut(s) | 190 |
| EcoT14I | CCWWGG | 1 cut(s) | 50 |
| ErhI | CCWWGG | 1 cut(s) | 50 |
| FaeI | CATG | 1 cut(s) | 31 |
| FaiI | YATR | 2 cut(s) | 29, 247 |
| FatI | CATG | 1 cut(s) | 27 |
| FbaI | TGATCA | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 1 cut(s) | 207 |
| Fsp4HI | GCNGC | 1 cut(s) | 207 |
| GluI | GCNGC | 1 cut(s) | 207 |
| GsuI | CTGGAG | 2 cut(s) | 57, 123 |
| HaeIII | GGCC | 1 cut(s) | 65 |
| HapII | CCGG | 1 cut(s) | 135 |
| Hin1II | CATG | 1 cut(s) | 31 |
| HincII | GTYRAC | 1 cut(s) | 33 |
| HindII | GTYRAC | 1 cut(s) | 33 |
| HinfI | GANTC | 1 cut(s) | 58 |
| HpaII | CCGG | 1 cut(s) | 135 |
| Hpy166II | GTNNAC | 1 cut(s) | 33 |
| Hpy188I | TCNGA | 2 cut(s) | 189, 196 |
| Hpy188III | TCNNGA | 3 cut(s) | 152, 200, 215 |
| Hpy8I | GTNNAC | 1 cut(s) | 33 |
| HpyCH4III | ACNGT | 1 cut(s) | 142 |
| HpyCH4V | TGCA | 1 cut(s) | 237 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 159 |
| HpyF3I | CTNAG | 3 cut(s) | 12, 81, 180 |
| Hsp92II | CATG | 1 cut(s) | 31 |
| Ksp22I | TGATCA | 1 cut(s) | 196 |
| Kzo9I | GATC | 1 cut(s) | 196 |
| LguI | GCTCTTC | 1 cut(s) | 153 |
| LmnI | GCTCC | 1 cut(s) | 52 |
| LpnPI | CCDG | 7 cut(s) | 21, 47, 87, 148, 182, 185, 228 |
| Lsp1109I | GCAGC | 1 cut(s) | 193 |
| MalI | GATC | 1 cut(s) | 198 |
| MboI | GATC | 1 cut(s) | 196 |
| MboII | GAAGA | 3 cut(s) | 67, 124, 140 |
| MlsI | TGGCCA | 1 cut(s) | 65 |
| MluCI | AATT | 1 cut(s) | 190 |
| MluNI | TGGCCA | 1 cut(s) | 65 |
| MlyI | GAGTC | 1 cut(s) | 67 |
| MnlI | CCTC | 3 cut(s) | 32, 98, 211 |
| Mox20I | TGGCCA | 1 cut(s) | 65 |
| MscI | TGGCCA | 1 cut(s) | 65 |
| MseI | TTAA | 1 cut(s) | 230 |
| Msp20I | TGGCCA | 1 cut(s) | 65 |
| MspA1I | CMGCKG | 1 cut(s) | 101 |
| MspI | CCGG | 1 cut(s) | 135 |
| MspR9I | CCNGG | 1 cut(s) | 135 |
| MvnI | CGCG | 1 cut(s) | 153 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 159 |
| NciI | CCSGG | 1 cut(s) | 135 |
| NdeII | GATC | 1 cut(s) | 196 |
| NlaIII | CATG | 1 cut(s) | 31 |
| NruI | TCGCGA | 1 cut(s) | 153 |
| NspI | RCATGY | 1 cut(s) | 31 |
| PciSI | GCTCTTC | 1 cut(s) | 153 |
| PkrI | GCNGC | 1 cut(s) | 208 |
| PleI | GAGTC | 1 cut(s) | 66 |
| PpsI | GAGTC | 1 cut(s) | 66 |
| RruI | TCGCGA | 1 cut(s) | 153 |
| RsaI | GTAC | 3 cut(s) | 10, 139, 167 |
| RsaNI | GTAC | 3 cut(s) | 9, 138, 166 |
| SapI | GCTCTTC | 1 cut(s) | 153 |
| SaqAI | TTAA | 1 cut(s) | 230 |
| SatI | GCNGC | 1 cut(s) | 207 |
| Sau3AI | GATC | 1 cut(s) | 196 |
| SchI | GAGTC | 1 cut(s) | 67 |
| ScrFI | CCNGG | 1 cut(s) | 135 |
| SetI | ASST | 4 cut(s) | 49, 109, 186, 208 |
| SfcI | CTRYAG | 1 cut(s) | 245 |
| Sse9I | AATT | 1 cut(s) | 190 |
| SsiI | CCGC | 3 cut(s) | 99, 130, 160 |
| StyD4I | CCNGG | 1 cut(s) | 133 |
| StyI | CCWWGG | 1 cut(s) | 50 |
| TaaI | ACNGT | 1 cut(s) | 142 |
| TasI | AATT | 1 cut(s) | 190 |
| Tru1I | TTAA | 1 cut(s) | 230 |
| Tru9I | TTAA | 1 cut(s) | 230 |
| TscAI | CASTG | 1 cut(s) | 184 |
| TseI | GCWGC | 1 cut(s) | 206 |
| TspRI | CASTG | 1 cut(s) | 184 |
| XapI | RAATTY | 1 cut(s) | 190 |
| XceI | RCATGY | 1 cut(s) | 31 |