pycom15g01340

Histone H3.3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0018832
Physical Location & Seq
Forward (+)
781100 .. 781616
517 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g01340.1

Sequence Viewer

Length: 222 bp
ATGGCTCGTACGAAGCAAACAGCTCGCAAATCCACCGGTGGTAAGGCTCCGAGGAAGCAACTCGCCACCAAGGCTGCAATCAAATCATCACCCAGAACCGGAGGAATCAAGAAGCGTCATCGCTACCGCCCTGGAACCGTTGCTCTTCGTGAAATTCGAAAGTACCGGAAGAGCACTGAGCTTTTTGATCCGCAAGCTGCCATTCCAACACCTTGTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

74

Amino Acids

8.11

Weight (kDa)

11.68

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018832)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13970
pyrus_communis pycom15g01340
rosa_chinensis RchiOBHm_Chr7g0210031
rosa_laevigata RLG00000018273
rosa_multiflora Rmu_sc0003581.1_g000002 Rmu_sc0004168.1_g000055 Rmu_sc0009286.1_g000007
rosa_samantha Rh2DG270300 Rh2DG288600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 127, 191
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 153
AfaI GTAC 2 cut(s) 10, 164
AfiI CCNNNNNNNGG 1 cut(s) 98
AgeI ACCGGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 130
AjuI GAANNNNNNNTTGG 1 cut(s) 199
AluBI AGCT 3 cut(s) 23, 181, 197
AluI AGCT 3 cut(s) 23, 181, 197
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 74, 197
ApoI RAATTY 1 cut(s) 153
AsiGI ACCGGT 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 81
AsuII TTCGAA 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 61, 184
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 2 cut(s) 75, 198
BlsI GCNGC 2 cut(s) 76, 199
Bme1390I CCNGG 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 48, 136
BmrFI CCNGG 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 157
BsaJI CCNNGG 3 cut(s) 50, 69, 130
BsaWI WCCGGW 3 cut(s) 35, 98, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 35
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 50, 69, 130
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 61, 184
BshTI ACCGGT 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 3 cut(s) 36, 99, 166
BsiWI CGTACG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 2 cut(s) 127, 191
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 48, 136
BspPI GGATC 1 cut(s) 182
BspQI GCTCTTC 2 cut(s) 150, 164
BspT104I TTCGAA 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 3 cut(s) 50, 69, 130
BssMI GATC 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 150, 164
BstBI TTCGAA 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 25, 195
BstDEI CTNAG 1 cut(s) 177
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 61, 184
BtgZI GCGATG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 25, 195
Cfr10I RCCGGY 1 cut(s) 35
CseI GACGC 1 cut(s) 104
Csp6I GTAC 2 cut(s) 9, 163
CspAI ACCGGT 1 cut(s) 35
CviJI RGCY 6 cut(s) 5, 23, 47, 74, 181, 197
CviKI_1 RGCY 6 cut(s) 5, 23, 47, 74, 181, 197
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 150, 164
EarI CTCTTC 2 cut(s) 150, 164
Eco130I CCWWGG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 75, 198
Fsp4HI GCNGC 2 cut(s) 75, 198
GluI GCNGC 2 cut(s) 75, 198
HapII CCGG 3 cut(s) 36, 99, 166
HgaI GACGC 1 cut(s) 104
HinfI GANTC 1 cut(s) 105
HpaII CCGG 3 cut(s) 36, 99, 166
HphI GGTGA 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 3 cut(s) 109, 149, 219
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 177
Kzo9I GATC 1 cut(s) 187
LguI GCTCTTC 2 cut(s) 150, 164
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 6 cut(s) 49, 106, 112, 117, 144, 179
Lsp1109I GCAGC 2 cut(s) 61, 184
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 2 cut(s) 137, 181
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 1 cut(s) 153
MnlI CCTC 2 cut(s) 45, 95
MspI CCGG 3 cut(s) 36, 99, 166
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 187
NlaIV GGNNCC 2 cut(s) 48, 136
NspV TTCGAA 1 cut(s) 157
PciSI GCTCTTC 2 cut(s) 150, 164
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PfeI GAWTC 1 cut(s) 105
Pfl23II CGTACG 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 2 cut(s) 76, 199
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspLI CGTACG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 48, 136
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
SapI GCTCTTC 2 cut(s) 150, 164
SatI GCNGC 2 cut(s) 75, 198
Sau3AI GATC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 176
SetI ASST 4 cut(s) 25, 183, 199, 214
SfuI TTCGAA 1 cut(s) 157
SgrAI CRCCGGYG 1 cut(s) 35
Sse9I AATT 1 cut(s) 153
SsiI CCGC 2 cut(s) 127, 191
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 157
TasI AATT 1 cut(s) 153
TfiI GAWTC 1 cut(s) 105
TscAI CASTG 1 cut(s) 181
TseI GCWGC 2 cut(s) 74, 197
TspRI CASTG 1 cut(s) 181
XapI RAATTY 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.