RLG00000018273

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018832
Physical Location & Seq
Reverse (-)
27803246 .. 27803712
467 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018273

Sequence Viewer

Length: 369 bp
ATGGCCGTTCAAGCTCGCCACCTCAATTTCTTCCCTCTCACCAACTCATCTGCAACAACAGGGAAATGGAAGCATGTCCAGTACCTAGATTGGGTAAGATGTGCGATTGATGAAAAGGATTGCCAGGGGGAGCAGTTCGAGTCCATCAACAATTTGGAGAGAAACTTGACGGCGCCGAGTTGGACTAGTTTCACCTTCATGCGTTTCGGCACCGAAACTGCGATGAGGCAAGACAATCCGGCTTTATTAGGGTCGAATCCTTTTCCGGCGACACCCCATCCCGCTCCGGAGATTAGGAGCTTGGACTTGGCGCTCACGGCGATCGATTCCAGAACTCTAGCCCTCGGTACCAATGTTTTAAAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.71

Weight (kDa)

6.82

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018832)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13970
pyrus_communis pycom15g01340
rosa_chinensis RchiOBHm_Chr7g0210031
rosa_laevigata RLG00000018273
rosa_multiflora Rmu_sc0003581.1_g000002 Rmu_sc0004168.1_g000055 Rmu_sc0009286.1_g000007
rosa_samantha Rh2DG270300 Rh2DG288600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 3 cut(s) 172, 209, 347
AccBSI CCGCTC 1 cut(s) 284
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 2 cut(s) 83, 349
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 11
AhlI ACTAGT 1 cut(s) 185
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 2 cut(s) 14, 300
AluI AGCT 2 cut(s) 14, 300
Aor13HI TCCGGA 1 cut(s) 286
AoxI GGCC 1 cut(s) 3
Asp718I GGTACC 1 cut(s) 347
AspLEI GCGC 2 cut(s) 175, 313
AsuHPI GGTGA 2 cut(s) 31, 184
BaeI ACNNNNGTAYC 1 cut(s) 339
BanI GGYRCC 3 cut(s) 172, 209, 347
BccI CCATC 2 cut(s) 152, 285
BceAI ACGGC 2 cut(s) 186, 333
BciT130I CCWGG 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 3 cut(s) 86, 186, 338
BfoI RGCGCY 2 cut(s) 176, 314
Bme1390I CCNGG 1 cut(s) 125
BmiI GGNNCC 3 cut(s) 174, 211, 349
BmrFI CCNGG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 124, 343
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 79
BseAI TCCGGA 1 cut(s) 286
BseBI CCWGG 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 124, 343
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 79
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 3 cut(s) 172, 209, 347
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 324
BsiSI CCGG 3 cut(s) 239, 266, 287
BslI CCNNNNNNNGG 1 cut(s) 91
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 286
Bsp143I GATC 1 cut(s) 321
BspACI CCGC 1 cut(s) 282
BspANI GGCC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 174, 211, 349
BspT107I GGYRCC 3 cut(s) 172, 209, 347
BsrBI CCGCTC 1 cut(s) 284
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 124, 343
BssMI GATC 1 cut(s) 321
BssNI GRCGYC 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 277
BstH2I RGCGCY 2 cut(s) 176, 314
BstHHI GCGC 2 cut(s) 175, 313
BstKTI GATC 1 cut(s) 324
BstMBI GATC 1 cut(s) 321
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 2 cut(s) 11, 317
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 324
BtgZI GCGATG 1 cut(s) 236
BtsCI GGATG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 2 cut(s) 175, 313
ClaI ATCGAT 1 cut(s) 324
Csp6I GTAC 2 cut(s) 82, 348
CviAII CATG 2 cut(s) 74, 199
CviJI RGCY 5 cut(s) 5, 14, 242, 300, 341
CviKI_1 RGCY 5 cut(s) 5, 14, 242, 300, 341
CviQI GTAC 2 cut(s) 82, 348
DinI GGCGCC 1 cut(s) 174
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
DraI TTTAAA 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 3
EcoRII CCWGG 1 cut(s) 123
EgeI GGCGCC 1 cut(s) 174
EheI GGCGCC 1 cut(s) 174
FaeI CATG 2 cut(s) 77, 202
FaiI YATR 2 cut(s) 75, 200
FatI CATG 2 cut(s) 73, 198
FauI CCCGC 1 cut(s) 289
FokI GGATG 1 cut(s) 264
FspBI CTAG 3 cut(s) 86, 186, 338
GlaI GCGC 2 cut(s) 174, 312
HaeII RGCGCY 2 cut(s) 176, 314
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 239, 266, 287
HhaI GCGC 2 cut(s) 175, 313
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 2 cut(s) 77, 202
Hin6I GCGC 2 cut(s) 173, 311
HinP1I GCGC 2 cut(s) 173, 311
HinfI GANTC 3 cut(s) 140, 256, 326
HpaII CCGG 3 cut(s) 239, 266, 287
HphI GGTGA 2 cut(s) 31, 184
Hpy188III TCNNGA 2 cut(s) 287, 330
HpyAV CCTTC 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 317
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 2 cut(s) 77, 202
HspAI GCGC 2 cut(s) 173, 311
KasI GGCGCC 1 cut(s) 172
Kpn2I TCCGGA 1 cut(s) 286
KpnI GGTACC 1 cut(s) 351
Kzo9I GATC 1 cut(s) 321
LmnI GCTCC 3 cut(s) 130, 289, 297
LpnPI CCDG 8 cut(s) 45, 92, 110, 137, 252, 279, 300, 343
MaeI CTAG 3 cut(s) 86, 186, 338
MalI GATC 1 cut(s) 323
MbiI CCGCTC 1 cut(s) 284
MboI GATC 1 cut(s) 321
MboII GAAGA 1 cut(s) 22
MluCI AATT 2 cut(s) 25, 151
Mly113I GGCGCC 1 cut(s) 173
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 4 cut(s) 32, 45, 219, 353
MroI TCCGGA 1 cut(s) 286
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 197
MspI CCGG 3 cut(s) 239, 266, 287
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 11, 317
NarI GGCGCC 1 cut(s) 173
NdeII GATC 1 cut(s) 321
NlaIII CATG 2 cut(s) 77, 202
NlaIV GGNNCC 3 cut(s) 174, 211, 349
NmeAIII GCCGAG 1 cut(s) 201
NspI RCATGY 1 cut(s) 77
PfeI GAWTC 2 cut(s) 256, 326
Ple19I CGATCG 1 cut(s) 324
PleI GAGTC 1 cut(s) 148
PluTI GGCGCC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 3 cut(s) 174, 211, 349
PvuI CGATCG 1 cut(s) 324
RsaI GTAC 2 cut(s) 83, 349
RsaNI GTAC 2 cut(s) 82, 348
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 359
Sau3AI GATC 1 cut(s) 321
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 125
SetI ASST 5 cut(s) 16, 24, 87, 197, 302
SfoI GGCGCC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 197
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 2 cut(s) 25, 151
SsiI CCGC 1 cut(s) 282
SspDI GGCGCC 1 cut(s) 172
SspMI CTAG 3 cut(s) 86, 186, 338
StyD4I CCNGG 1 cut(s) 123
TaqI TCGA 3 cut(s) 138, 254, 324
TasI AATT 2 cut(s) 25, 151
TfiI GAWTC 2 cut(s) 256, 326
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 126, 187
XceI RCATGY 1 cut(s) 77
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XspI CTAG 3 cut(s) 86, 186, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.