Rmu_sc0004168.1_g000055

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004168.1
OG0018832
Physical Location & Seq
Reverse (-)
194220 .. 194468
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004168.1_g000055.1.cds

Sequence Viewer

Length: 249 bp
atggctcgtaccaagcagaccgctcgcaagtccaccggaggaaaggcgcctaggaaacagctggcgaccaaggcggcccggaagtcggctccggcgaccggaggggtgaagaagcctcaccggttcaggccgggaacggtggcgctgagagagatcaggaagtaccagaagagcacggagcttctgatccgcaagcttccgttccagaggcttgtgagggagattgctcaggatttcaataatctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

82

Amino Acids

9.27

Weight (kDa)

11.94

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018832)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13970
pyrus_communis pycom15g01340
rosa_chinensis RchiOBHm_Chr7g0210031
rosa_laevigata RLG00000018273
rosa_multiflora Rmu_sc0003581.1_g000002 Rmu_sc0004168.1_g000055 Rmu_sc0009286.1_g000007
rosa_samantha Rh2DG270300 Rh2DG288600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 23
AciI CCGC 3 cut(s) 21, 74, 190
AclWI GGATC 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 2 cut(s) 10, 164
AfiI CCNNNNNNNGG 2 cut(s) 85, 98
AgeI ACCGGT 1 cut(s) 120
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 3 cut(s) 61, 181, 196
AluI AGCT 3 cut(s) 61, 181, 196
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 1 cut(s) 181
AoxI GGCC 2 cut(s) 75, 128
AsiGI ACCGGT 1 cut(s) 120
AspA2I CCTAGG 1 cut(s) 50
AspLEI GCGC 2 cut(s) 49, 145
AspS9I GGNCC 1 cut(s) 76
AsuC2I CCSGG 2 cut(s) 79, 132
AsuHPI GGTGA 2 cut(s) 110, 118
AvrII CCTAGG 1 cut(s) 50
BanI GGYRCC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BcnI CCSGG 2 cut(s) 79, 132
BfaI CTAG 1 cut(s) 51
BfoI RGCGCY 2 cut(s) 50, 146
BisI GCNGC 1 cut(s) 75
BlnI CCTAGG 1 cut(s) 50
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 79, 132
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 48, 90
BmrFI CCNGG 2 cut(s) 79, 132
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 79, 132
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 50, 69
BsaWI WCCGGW 3 cut(s) 35, 98, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 98
Bse118I RCCGGY 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 50, 69
BseLI CCNNNNNNNGG 2 cut(s) 85, 98
BseMII CTCAG 2 cut(s) 137, 242
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 77, 130
BshNI GGYRCC 1 cut(s) 46
BshTI ACCGGT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
BslI CCNNNNNNNGG 2 cut(s) 85, 98
BsnI GGCC 2 cut(s) 77, 130
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 153, 186
BspACI CCGC 3 cut(s) 21, 74, 190
BspANI GGCC 2 cut(s) 77, 130
BspCNI CTCAG 2 cut(s) 138, 241
BspLI GGNNCC 2 cut(s) 48, 90
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 50, 69
BssMI GATC 2 cut(s) 153, 186
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 50, 69
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 3 cut(s) 25, 63, 194
BstDEI CTNAG 2 cut(s) 146, 228
BstH2I RGCGCY 2 cut(s) 50, 146
BstHHI GCGC 2 cut(s) 49, 145
BstKTI GATC 2 cut(s) 156, 189
BstMBI GATC 2 cut(s) 153, 186
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstSCI CCNGG 2 cut(s) 77, 130
BsuRI GGCC 2 cut(s) 77, 130
Cac8I GCNNGC 3 cut(s) 25, 63, 194
CfoI GCGC 2 cut(s) 49, 145
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 9, 163
CspAI ACCGGT 1 cut(s) 120
CviJI RGCY 9 cut(s) 5, 61, 77, 89, 115, 130, 181, 196, 211
CviKI_1 RGCY 9 cut(s) 5, 61, 77, 89, 115, 130, 181, 196, 211
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 2 cut(s) 146, 228
DinI GGCGCC 1 cut(s) 48
DpnI GATC 2 cut(s) 155, 188
DpnII GATC 2 cut(s) 153, 186
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco130I CCWWGG 2 cut(s) 50, 69
EcoT14I CCWWGG 2 cut(s) 50, 69
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
ErhI CCWWGG 2 cut(s) 50, 69
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 51
GlaI GCGC 2 cut(s) 48, 144
GluI GCNGC 1 cut(s) 75
HaeII RGCGCY 2 cut(s) 50, 146
HaeIII GGCC 2 cut(s) 77, 130
HapII CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
HhaI GCGC 2 cut(s) 49, 145
Hin1I GRCGYC 1 cut(s) 47
Hin6I GCGC 2 cut(s) 47, 143
HinP1I GCGC 2 cut(s) 47, 143
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
HphI GGTGA 2 cut(s) 110, 118
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 3 cut(s) 157, 205, 230
Hpy8I GTNNAC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 146, 228
Hsp92I GRCGYC 1 cut(s) 47
HspAI GCGC 2 cut(s) 47, 143
KasI GGCGCC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 153, 186
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 94, 178
MaeI CTAG 1 cut(s) 51
MalI GATC 2 cut(s) 155, 188
MbiI CCGCTC 1 cut(s) 23
MboI GATC 2 cut(s) 153, 186
MboII GAAGA 2 cut(s) 121, 181
MhlI GDGCHC 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 47
MnlI CCTC 5 cut(s) 32, 95, 126, 201, 210
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
MspR9I CCNGG 2 cut(s) 79, 132
MwoI GCNNNNNNNGC 1 cut(s) 71
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 2 cut(s) 79, 132
NdeII GATC 2 cut(s) 153, 186
NlaIV GGNNCC 2 cut(s) 48, 90
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PinAI ACCGGT 1 cut(s) 120
PkrI GCNGC 1 cut(s) 76
PluTI GGCGCC 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 48, 90
PspPI GGNCC 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 153, 186
Sau96I GGNCC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 79, 132
SduI GDGCHC 1 cut(s) 176
SetI ASST 3 cut(s) 63, 183, 198
SfoI GGCGCC 1 cut(s) 48
SsiI CCGC 3 cut(s) 21, 74, 190
SspDI GGCGCC 1 cut(s) 46
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 77, 130
StyI CCWWGG 2 cut(s) 50, 69
TaaI ACNGT 1 cut(s) 139
TauI GCSGC 1 cut(s) 77
TspGWI ACGGA 2 cut(s) 189, 191
XmaJI CCTAGG 1 cut(s) 50
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.