Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003581.1

Orthogroup ID

OG0018832

Physical Location & Seq

Genomic Coordinates Reverse (-)

9569 .. 12896

Gene Structure 3328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003581.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atggccgttcaggctcgccacctcaatctcttccctctcaccaactcacctgcaacaacaggtactaatcccttcttcttcttcttcttcttctgtgaccttgagacttctactgggttagttctgatttttggtttttcgcagcgaaatcatgaatccaggcatccggttaagggacatggaagcatgtacagtacccagattgggagcttggacttggcgctcacggcgatcgattccagaaccctagccctcggtgcttcccctgttggggaagcagcagcagagaagccaagaattcttcgccgccggagccggtgcagttcttcttccacatcaatctcatcaattcatcagtctttagcatattcgcacaaatgggcgattctccgactccgattccggctaggacggccgtcgtggaccggttgcaaatccaccggcggcaaagctttggggaagcaactccccaccaaagctgcttggaagtcagctccgacaaccgccggagtcaagaagcctcatcgctcccggaaccgacctccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000785 GO:0000786 GO:0000819 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009987 GO:0016043 GO:0019237 GO:0022402 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0048285 GO:0051276 GO:0051382 GO:0051383 GO:0065003 GO:0065004 GO:0070925 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

182

Amino Acids

19.92

Weight (kDa)

11.44

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13970
pyrus_communis	pycom15g01340
rosa_chinensis	RchiOBHm_Chr7g0210031
rosa_laevigata	RLG00000018273
rosa_multiflora	Rmu_sc0003581.1_g000002 Rmu_sc0004168.1_g000055 Rmu_sc0009286.1_g000007
rosa_samantha	Rh2DG270300 Rh2DG288600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	58
AciI	CCGC	3 cut(s)	307, 444, 504
AcoI	YGGCCR	2 cut(s)	3, 413
AcsI	RAATTY	1 cut(s)	297
AfaI	GTAC	3 cut(s)	64, 191, 196
AfiI	CCNNNNNNNGG	4 cut(s)	173, 204, 270, 271
AgeI	ACCGGT	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	4 cut(s)	210, 452, 479, 494
AluI	AGCT	4 cut(s)	210, 452, 479, 494
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	2 cut(s)	3, 413
ApeKI	GCWGC	4 cut(s)	142, 278, 281, 479
ApoI	RAATTY	1 cut(s)	297
AsiGI	ACCGGT	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	423
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	2 cut(s)	31, 39
AvaII	GGWCC	1 cut(s)	423
BbvI	GCAGC	4 cut(s)	154, 290, 293, 466
BceAI	ACGGC	3 cut(s)	243, 400, 428
BciT130I	CCWGG	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	248, 407
BfoI	RGCGCY	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	58
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	6 cut(s)	143, 279, 282, 307, 445, 480
BlsI	GCNGC	6 cut(s)	144, 280, 283, 308, 446, 481
Bme1390I	CCNGG	2 cut(s)	160, 532
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	2 cut(s)	314, 536
BmrFI	CCNGG	2 cut(s)	160, 532
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	123
BoxI	GACNNNNGTC	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	532
Bsa29I	ATCGAT	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	166, 425
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 204, 270, 271
Bse118I	RCCGGY	3 cut(s)	315, 425, 440
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	160
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	4 cut(s)	173, 204, 270, 271
BseNI	ACTGG	1 cut(s)	118
BseX3I	CGGCCG	1 cut(s)	413
BseXI	GCAGC	4 cut(s)	154, 290, 293, 466
BsgI	GTGCAG	1 cut(s)	340
Bsh1285I	CGRYCG	2 cut(s)	234, 416
BshFI	GGCC	2 cut(s)	5, 415
BshTI	ACCGGT	1 cut(s)	425
BshVI	ATCGAT	1 cut(s)	234
BsiEI	CGRYCG	2 cut(s)	234, 416
BsiSI	CCGG	8 cut(s)	167, 310, 316, 403, 426, 441, 507, 532
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	4 cut(s)	173, 204, 270, 271
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	5, 415
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	3 cut(s)	307, 444, 504
BspANI	GGCC	2 cut(s)	5, 415
BspDI	ATCGAT	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	314, 536
BspMI	ACCTGC	1 cut(s)	58
BsrFI	RCCGGY	3 cut(s)	315, 425, 440
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	3 cut(s)	315, 425, 440
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	231
BstMCI	CGRYCG	2 cut(s)	234, 416
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 227, 257, 312, 412
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	190
BstPAI	GACNNNNGTC	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	158, 530
BstV1I	GCAGC	4 cut(s)	154, 290, 293, 466
BstZI	CGGCCG	1 cut(s)	413
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	5, 415
BsuTUI	ATCGAT	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	509
BtsCI	GGATG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	16
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	3 cut(s)	315, 425, 440
Cfr13I	GGNCC	1 cut(s)	423
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	3 cut(s)	63, 190, 195
CspAI	ACCGGT	1 cut(s)	425
CviAII	CATG	4 cut(s)	152, 179, 187, 546
CviQI	GTAC	3 cut(s)	63, 190, 195
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
EaeI	YGGCCR	2 cut(s)	3, 413
EagI	CGGCCG	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EclXI	CGGCCG	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	423
Eco52I	CGGCCG	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	158
FaeI	CATG	4 cut(s)	155, 182, 190, 549
FaiI	YATR	5 cut(s)	153, 180, 188, 367, 547
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	4 cut(s)	151, 178, 186, 545
Fnu4HI	GCNGC	6 cut(s)	143, 279, 282, 307, 445, 480
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	6 cut(s)	143, 279, 282, 307, 445, 480
FspBI	CTAG	2 cut(s)	248, 407
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	6 cut(s)	143, 279, 282, 307, 445, 480
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	5, 415
HapII	CCGG	8 cut(s)	167, 310, 316, 403, 426, 441, 507, 532
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	4 cut(s)	155, 182, 190, 549
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	6 cut(s)	155, 236, 385, 393, 399, 510
HpaII	CCGG	8 cut(s)	167, 310, 316, 403, 426, 441, 507, 532
HphI	GGTGA	2 cut(s)	31, 39
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	4 cut(s)	126, 392, 398, 498
Hpy188III	TCNNGA	3 cut(s)	152, 240, 514
Hpy8I	GTNNAC	1 cut(s)	423
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	53, 321, 432
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 227, 257, 312, 412
Hsp92II	CATG	4 cut(s)	155, 182, 190, 549
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	4 cut(s)	207, 312, 499, 533
Lsp1109I	GCAGC	4 cut(s)	154, 290, 293, 466
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	248, 407
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MluCI	AATT	2 cut(s)	297, 348
MlyI	GAGTC	2 cut(s)	387, 519
MmeI	TCCRAC	2 cut(s)	415, 521
MnlI	CCTC	4 cut(s)	32, 45, 263, 531
MseI	TTAA	1 cut(s)	171
MspI	CCGG	8 cut(s)	167, 310, 316, 403, 426, 441, 507, 532
MspR9I	CCNGG	2 cut(s)	160, 532
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	5 cut(s)	11, 227, 257, 312, 412
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	4 cut(s)	155, 182, 190, 549
NlaIV	GGNNCC	2 cut(s)	314, 536
NmuCI	GTSAC	1 cut(s)	95
NspI	RCATGY	1 cut(s)	190
PagI	TCATGA	1 cut(s)	151
PaqCI	CACCTGC	1 cut(s)	58
PfeI	GAWTC	4 cut(s)	155, 236, 385, 399
PfoI	TCCNGGA	1 cut(s)	530
PinAI	ACCGGT	1 cut(s)	425
PkrI	GCNGC	6 cut(s)	144, 280, 283, 308, 446, 481
Ple19I	CGATCG	1 cut(s)	234
PleI	GAGTC	2 cut(s)	387, 518
PpsI	GAGTC	2 cut(s)	387, 518
PshAI	GACNNNNGTC	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	314, 536
PspPI	GGNCC	1 cut(s)	423
PvuI	CGATCG	1 cut(s)	234
RsaI	GTAC	3 cut(s)	64, 191, 196
RsaNI	GTAC	3 cut(s)	63, 190, 195
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	6 cut(s)	143, 279, 282, 307, 445, 480
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	423
SchI	GAGTC	2 cut(s)	387, 519
ScrFI	CCNGG	2 cut(s)	160, 532
SetI	ASST	9 cut(s)	24, 52, 64, 102, 212, 454, 481, 496, 544
SfaNI	GCATC	1 cut(s)	172
SgrAI	CRCCGGYG	1 cut(s)	440
SinI	GGWCC	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	297, 348
SsiI	CCGC	3 cut(s)	307, 444, 504
SspMI	CTAG	2 cut(s)	248, 407
StyD4I	CCNGG	2 cut(s)	158, 530
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	297, 348
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	2 cut(s)	309, 447
TfiI	GAWTC	4 cut(s)	155, 236, 385, 399
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	4 cut(s)	142, 278, 281, 479
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	168, 341
VpaK11BI	GGWCC	1 cut(s)	423
XapI	RAATTY	1 cut(s)	297
XceI	RCATGY	1 cut(s)	190
XspI	CTAG	2 cut(s)	248, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.