FvH4_4g16860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013404
Physical Location & Seq
Reverse (-)
20737625 .. 20738731
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16860.t1

Sequence Viewer

Length: 372 bp
ATGGACCCCCAAAAATCCATAAATACAGACGACTCACACTCTCAGACTGAGAGAGCGAAAGCAAAAGAGAAGATGGCATCGCCTACAGCAAGGATCACGTTCCGGGTAGTAATGGTAGCTCTGGCTGTTCTTGTCCTCTTCTACATGGGTCGTCCTCTCTACTGGAAAGTCTCTGCCACCATCCACGAGATCCGTGAAAACAGACAGACCGTCAAGCAAGGTCTGTCGCAGATTGTGTTGGAAGCCCAGAGAACTGTGGGGTGGTACCACGACGAGTCGGATTCGGGTGTAAGAGATGATCGGGTCGGGAAGAAGGTGGCCACGACCCGAAGGTTGCTGTTTAATCAGCCCTTTACTCCAATCACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.03

Weight (kDa)

9.91

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18850
fragaria_vesca FvH4_4g16860
malus_domestica MD13G1176100.v1.1 MD16G1177900.v1.1
prunus_persica Prupe.1G145200_v2.0.a1
pyrus_communis pycom13g15180 pycom16g14930
rosa_chinensis RchiOBHm_Chr4g0420431
rosa_multiflora Rmu_co8133642.1_g000001 Rmu_sc0002248.1_g000025 Rmu_sc0033516.1_g000002
rosa_roxburghii Rroxscaffold_5G00363070
rosa_rugosa Rorug04G0163800
rosa_samantha Rh4AG225300 Rh4BG228100 Rh4CG239600 Rh4DG223800
rosa_wichuraiana Rw4G019450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 264
AclWI GGATC 2 cut(s) 101, 184
AcoI YGGCCR 1 cut(s) 318
AfaI GTAC 1 cut(s) 266
AhdI GACNNNNNGTC 1 cut(s) 209
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 2 cut(s) 101, 184
AoxI GGCC 1 cut(s) 318
Asp718I GGTACC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 320
BanI GGYRCC 1 cut(s) 264
BauI CACGAG 1 cut(s) 185
BccI CCATC 2 cut(s) 67, 188
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 175
BfmI CTRYAG 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 4
BmeRI GACNNNNNGTC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 266
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 39, 56
BseNI ACTGG 1 cut(s) 167
BshFI GGCC 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 1 cut(s) 320
Bsp143I GATC 3 cut(s) 93, 189, 298
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 2 cut(s) 40, 55
BspLI GGNNCC 2 cut(s) 6, 266
BspPI GGATC 2 cut(s) 101, 184
BspT107I GGYRCC 1 cut(s) 264
BsrI ACTGG 1 cut(s) 167
BssMI GATC 3 cut(s) 93, 189, 298
BssSI CACGAG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 211, 256
Bst6I CTCTTC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 42, 48
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 3 cut(s) 96, 192, 301
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 93, 189, 298
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 1 cut(s) 320
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 265
CviAII CATG 1 cut(s) 145
CviJI RGCY 5 cut(s) 119, 125, 245, 320, 349
CviKI_1 RGCY 5 cut(s) 119, 125, 245, 320, 349
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 2 cut(s) 42, 48
DpnI GATC 3 cut(s) 95, 191, 300
DpnII GATC 3 cut(s) 93, 189, 298
DriI GACNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 143
Eam1105I GACNNNNNGTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 4
FaeI CATG 1 cut(s) 148
FaiI YATR 2 cut(s) 20, 146
FatI CATG 1 cut(s) 144
FokI GGATG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 320
HapII CCGG 1 cut(s) 103
Hin1II CATG 1 cut(s) 148
HinfI GANTC 3 cut(s) 32, 275, 281
HpaII CCGG 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 45, 280
Hpy188III TCNNGA 1 cut(s) 307
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 307, 324
HpyCH4III ACNGT 2 cut(s) 211, 256
HpyCH4IV ACGT 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 42, 48
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 1 cut(s) 148
KpnI GGTACC 1 cut(s) 268
Kzo9I GATC 3 cut(s) 93, 189, 298
LpnPI CCDG 4 cut(s) 107, 116, 148, 260
LweI GCATC 1 cut(s) 86
MaeII ACGT 1 cut(s) 98
MalI GATC 3 cut(s) 95, 191, 300
MboI GATC 3 cut(s) 93, 189, 298
MboII GAAGA 3 cut(s) 82, 130, 322
MflI RGATCY 1 cut(s) 189
MlsI TGGCCA 1 cut(s) 320
MluNI TGGCCA 1 cut(s) 320
MlyI GAGTC 2 cut(s) 26, 284
MmeI TCCRAC 2 cut(s) 219, 258
MnlI CCTC 2 cut(s) 146, 165
Mox20I TGGCCA 1 cut(s) 320
MscI TGGCCA 1 cut(s) 320
MseI TTAA 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 320
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 104
NciI CCSGG 1 cut(s) 104
NdeII GATC 3 cut(s) 93, 189, 298
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 2 cut(s) 6, 266
PfeI GAWTC 1 cut(s) 281
PleI GAGTC 2 cut(s) 26, 283
PpsI GAGTC 2 cut(s) 26, 283
PspN4I GGNNCC 2 cut(s) 6, 266
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 189
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 342
Sau3AI GATC 3 cut(s) 93, 189, 298
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 26, 284
ScrFI CCNGG 1 cut(s) 104
SetI ASST 5 cut(s) 101, 121, 223, 318, 335
SfaNI GCATC 1 cut(s) 86
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 211, 256
TaiI ACGT 1 cut(s) 101
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.