Rroxscaffold_5G00363070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013404
Physical Location & Seq
Reverse (-)
44162972 .. 44163745
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00363070.1

Sequence Viewer

Length: 285 bp
ATGGCGTCGCCCACGGCAAGGATCACGTTCCGCGTAGTAATGTTAGCTCTGGCTCTTCTGGTCGTCTTCTACATGGGTCGTCCTCTCTACTGGAAAATCTCAGCCACCATCCACGAGATCCGCGAAAACAGACAGACCGTTAAGCAAGGTTTGTCGCAGATTGTGCTGGAAGCCCAGAGAACTGTGGGTTGGTATCACGACGAGTCGGATTCGGGTGCCCGCAAAGATCGGGTCGGGAAGAAGGTGGCCACGGCCCGGAGGCTGCTGTTCAGTCAGGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.72

Weight (kDa)

10.66

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18850
fragaria_vesca FvH4_4g16860
malus_domestica MD13G1176100.v1.1 MD16G1177900.v1.1
prunus_persica Prupe.1G145200_v2.0.a1
pyrus_communis pycom13g15180 pycom16g14930
rosa_chinensis RchiOBHm_Chr4g0420431
rosa_multiflora Rmu_co8133642.1_g000001 Rmu_sc0002248.1_g000025 Rmu_sc0033516.1_g000002
rosa_roxburghii Rroxscaffold_5G00363070
rosa_rugosa Rorug04G0163800
rosa_samantha Rh4AG225300 Rh4BG228100 Rh4CG239600 Rh4DG223800
rosa_wichuraiana Rw4G019450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AccII CGCG 2 cut(s) 33, 123
AciI CCGC 3 cut(s) 31, 121, 220
AclWI GGATC 2 cut(s) 29, 112
AcoI YGGCCR 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 18, 255
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
AlwI GGATC 2 cut(s) 29, 112
AoxI GGCC 2 cut(s) 246, 252
ApeKI GCWGC 1 cut(s) 262
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 256
BaeGI GKGCMC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 248
BanI GGYRCC 1 cut(s) 215
BauI CACGAG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 249
BccI CCATC 1 cut(s) 116
BceAI ACGGC 2 cut(s) 30, 267
BcnI CCSGG 1 cut(s) 256
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 12, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 255
Bse1I ACTGG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 12, 249
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 18, 255
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 1 cut(s) 249
Bsh1236I CGCG 2 cut(s) 33, 123
BshFI GGCC 2 cut(s) 248, 254
BshNI GGYRCC 1 cut(s) 215
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 18, 255
BsnI GGCC 2 cut(s) 248, 254
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 3 cut(s) 21, 117, 226
BspACI CCGC 3 cut(s) 31, 121, 220
BspANI GGCC 2 cut(s) 248, 254
BspCNI CTCAG 1 cut(s) 113
BspFNI CGCG 2 cut(s) 33, 123
BspHI TCATGA 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 2 cut(s) 29, 112
BspQI GCTCTTC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 12, 249
BssMI GATC 3 cut(s) 21, 117, 226
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 139, 184
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 100
BstDSI CCRYGG 2 cut(s) 12, 249
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 2 cut(s) 33, 123
BstKTI GATC 3 cut(s) 24, 120, 229
BstMBI GATC 3 cut(s) 21, 117, 226
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 254
BstSLI GKGCMC 1 cut(s) 220
BstUI CGCG 2 cut(s) 33, 123
BstV1I GCAGC 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 2 cut(s) 248, 254
BtgI CCRYGG 2 cut(s) 12, 249
BtsCI GGATG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 220
CciI TCATGA 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 253
CviAII CATG 2 cut(s) 73, 282
CviJI RGCY 7 cut(s) 47, 53, 104, 173, 248, 254, 262
CviKI_1 RGCY 7 cut(s) 47, 53, 104, 173, 248, 254, 262
DdeI CTNAG 1 cut(s) 100
DpnI GATC 3 cut(s) 23, 119, 228
DpnII GATC 3 cut(s) 21, 117, 226
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
FaeI CATG 2 cut(s) 76, 285
FaiI YATR 2 cut(s) 74, 283
FatI CATG 2 cut(s) 72, 281
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 263
HaeIII GGCC 2 cut(s) 248, 254
HapII CCGG 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 76, 285
HinfI GANTC 2 cut(s) 203, 209
HpaII CCGG 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 3 cut(s) 197, 235, 282
Hpy99I CGWCG 2 cut(s) 10, 203
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 139, 184
HpyCH4IV ACGT 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 76, 285
Kzo9I GATC 3 cut(s) 21, 117, 226
LguI GCTCTTC 1 cut(s) 60
LpnPI CCDG 7 cut(s) 35, 44, 76, 152, 188, 260, 269
Lsp1109I GCAGC 1 cut(s) 249
MaeII ACGT 1 cut(s) 26
MalI GATC 3 cut(s) 23, 119, 228
MboI GATC 3 cut(s) 21, 117, 226
MboII GAAGA 3 cut(s) 47, 58, 250
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 248
MluNI TGGCCA 1 cut(s) 248
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 2 cut(s) 93, 252
Mox20I TGGCCA 1 cut(s) 248
MscI TGGCCA 1 cut(s) 248
MseI TTAA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 248
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 1 cut(s) 256
MvnI CGCG 2 cut(s) 33, 123
MwoI GCNNNNNNNGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 256
NdeII GATC 3 cut(s) 21, 117, 226
NlaIII CATG 2 cut(s) 76, 285
NlaIV GGNNCC 1 cut(s) 217
PagI TCATGA 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 253
PsuI RGATCY 1 cut(s) 117
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 3 cut(s) 21, 117, 226
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 220
SetI ASST 5 cut(s) 29, 49, 151, 246, 279
SsiI CCGC 3 cut(s) 31, 121, 220
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 139, 184
TaiI ACGT 1 cut(s) 29
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.