Prupe.1G145200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013404
Physical Location & Seq
Forward (+)
11397668 .. 11399472
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G145200.1

Sequence Viewer

Length: 291 bp
ATGGCGTCGTCCGCAGCAAGGATCACCTTCCGCATACTCATCATAGCTCTGGTTCTTCTGGTCCTCTTCTACGTCGGTCGACCACTCTACTGGAAAATCTCCGCCACCATCCACGAGATCCGCGAAAACAAACAGACCGTTCAACAAGGTTTGTCGAAGATCGTTCTGGAAGCTCAGAAATCGGTGGGTTGGTACCACGACGAATCGGATTCGGGGTCCCGCGTAAATCGGGTCGCGAAGAATGTCGGGTTGGCCACGACCCGGAGGCTATTGCTCCACCAGGTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.83

Weight (kDa)

10.42

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18850
fragaria_vesca FvH4_4g16860
malus_domestica MD13G1176100.v1.1 MD16G1177900.v1.1
prunus_persica Prupe.1G145200_v2.0.a1
pyrus_communis pycom13g15180 pycom16g14930
rosa_chinensis RchiOBHm_Chr4g0420431
rosa_multiflora Rmu_co8133642.1_g000001 Rmu_sc0002248.1_g000025 Rmu_sc0033516.1_g000002
rosa_roxburghii Rroxscaffold_5G00363070
rosa_rugosa Rorug04G0163800
rosa_samantha Rh4AG225300 Rh4BG228100 Rh4CG239600 Rh4DG223800
rosa_wichuraiana Rw4G019450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 79
AccII CGCG 3 cut(s) 123, 222, 236
AciI CCGC 5 cut(s) 12, 31, 102, 121, 220
AclWI GGATC 2 cut(s) 29, 112
AcoI YGGCCR 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 18, 261
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 279
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 2 cut(s) 47, 173
AluI AGCT 2 cut(s) 47, 173
AlwI GGATC 2 cut(s) 29, 112
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 14
Asp718I GGTACC 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 61, 216
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 2 cut(s) 61, 216
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 1 cut(s) 192
BauI CACGAG 1 cut(s) 113
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 281
BcnI CCSGG 1 cut(s) 262
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 262, 281
Bme18I GGWCC 2 cut(s) 61, 216
BmgT120I GGNCC 2 cut(s) 61, 216
BmiI GGNNCC 3 cut(s) 194, 217, 218
BmrFI CCNGG 2 cut(s) 262, 281
BpuMI CCSGG 1 cut(s) 262
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 261
Bse1I ACTGG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 281
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 18, 261
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 3 cut(s) 123, 222, 236
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 2 cut(s) 18, 261
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 1 cut(s) 254
Bsp143I GATC 3 cut(s) 21, 117, 159
Bsp68I TCGCGA 1 cut(s) 236
BspACI CCGC 5 cut(s) 12, 31, 102, 121, 220
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 3 cut(s) 123, 222, 236
BspLI GGNNCC 3 cut(s) 194, 217, 218
BspPI GGATC 2 cut(s) 29, 112
BspT107I GGYRCC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 95
BssMI GATC 3 cut(s) 21, 117, 159
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 3 cut(s) 123, 222, 236
BstKTI GATC 3 cut(s) 24, 120, 162
BstMBI GATC 3 cut(s) 21, 117, 159
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 260, 279
BstUI CGCG 3 cut(s) 123, 222, 236
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 117
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 1 cut(s) 108
BtuMI TCGCGA 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 61, 216
CsiI ACCWGGT 1 cut(s) 279
Csp6I GTAC 1 cut(s) 193
CviJI RGCY 4 cut(s) 47, 173, 254, 268
CviKI_1 RGCY 4 cut(s) 47, 173, 254, 268
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 174
DpnI GATC 3 cut(s) 23, 119, 161
DpnII GATC 3 cut(s) 21, 117, 159
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 61, 216
EcoO109I RGGNCCY 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 279
FaiI YATR 3 cut(s) 35, 44, 289
FaqI GGGAC 1 cut(s) 202
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HinfI GANTC 2 cut(s) 203, 209
HpaII CCGG 1 cut(s) 262
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 177, 208
Hpy188III TCNNGA 2 cut(s) 167, 235
Hpy8I GTNNAC 1 cut(s) 80
Hpy99I CGWCG 3 cut(s) 10, 77, 203
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 5
KflI GGGWCCC 1 cut(s) 216
KpnI GGTACC 1 cut(s) 196
Kzo9I GATC 3 cut(s) 21, 117, 159
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 6 cut(s) 35, 44, 76, 152, 266, 275
Lsp1109I GCAGC 1 cut(s) 26
MabI ACCWGGT 1 cut(s) 279
MaeII ACGT 1 cut(s) 72
MalI GATC 3 cut(s) 23, 119, 161
MboI GATC 3 cut(s) 21, 117, 159
MboII GAAGA 4 cut(s) 47, 58, 169, 250
MflI RGATCY 1 cut(s) 117
MlsI TGGCCA 1 cut(s) 254
MluNI TGGCCA 1 cut(s) 254
MnlI CCTC 2 cut(s) 74, 258
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 2 cut(s) 262, 281
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 3 cut(s) 123, 222, 236
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 262
NdeII GATC 3 cut(s) 21, 117, 159
NlaIV GGNNCC 3 cut(s) 194, 217, 218
NruI TCGCGA 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 2 cut(s) 203, 209
PkrI GCNGC 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 3 cut(s) 194, 217, 218
PspPI GGNCC 2 cut(s) 61, 216
PspPPI RGGWCCY 1 cut(s) 216
PsuI RGATCY 1 cut(s) 117
RruI TCGCGA 1 cut(s) 236
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SalI GTCGAC 1 cut(s) 78
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 3 cut(s) 21, 117, 159
Sau96I GGNCC 2 cut(s) 61, 216
ScrFI CCNGG 2 cut(s) 262, 281
SetI ASST 6 cut(s) 29, 49, 75, 151, 175, 285
SexAI ACCWGGT 1 cut(s) 279
SinI GGWCC 2 cut(s) 61, 216
SsiI CCGC 5 cut(s) 12, 31, 102, 121, 220
StyD4I CCNGG 2 cut(s) 260, 279
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 79, 155
TaqII GACCGA 1 cut(s) 65
TfiI GAWTC 2 cut(s) 203, 209
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 276
VpaK11BI GGWCC 2 cut(s) 61, 216
XmiI GTMKAC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.