Rh4BG228100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013404
Physical Location & Seq
Reverse (-)
39245647 .. 39246112
466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG228100.1

Sequence Viewer

Length: 363 bp
ATGGCGTCGCCCACGGCAAGGATCACGTTCCGCGTAGTAATGTTAGCTCTGGCTCTTCTGGTCGTCTTCTACATGGGTCGTCCTCTCTACTGGAAAATCTCAGCCACCATCCACGAGATCCGCGAAAACAGACAGACCGTTAAGCAAGATTGTGCTGGAAGCCCAGAGAACTGTGGGTTGGTATCACGACGAGTCGGATTCGGGTGCCCGCAAAGATCCGGTCGGGAAGAAGGTGGCCACGACCCGGAGGCTGCTGTTCAGTCAGGTTTCATGAAGACCCTTTACTCCAGTCACAGCTTGAGGTTTCTATGTGATGATGTCAGTTGTGGCATAGTGGGTCTGTTCAGATCTGATGTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.21

Weight (kDa)

8.72

Isoelectric Point (pI)

64.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18850
fragaria_vesca FvH4_4g16860
malus_domestica MD13G1176100.v1.1 MD16G1177900.v1.1
prunus_persica Prupe.1G145200_v2.0.a1
pyrus_communis pycom13g15180 pycom16g14930
rosa_chinensis RchiOBHm_Chr4g0420431
rosa_multiflora Rmu_co8133642.1_g000001 Rmu_sc0002248.1_g000025 Rmu_sc0033516.1_g000002
rosa_roxburghii Rroxscaffold_5G00363070
rosa_rugosa Rorug04G0163800
rosa_samantha Rh4AG225300 Rh4BG228100 Rh4CG239600 Rh4DG223800
rosa_wichuraiana Rw4G019450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 204
AccII CGCG 2 cut(s) 33, 123
AciI CCGC 3 cut(s) 31, 121, 209
AclWI GGATC 3 cut(s) 29, 112, 210
AcoI YGGCCR 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 18, 244
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 2 cut(s) 47, 297
AluI AGCT 2 cut(s) 47, 297
AlwI GGATC 3 cut(s) 29, 112, 210
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 251
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AsuC2I CCSGG 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 237
BanI GGYRCC 1 cut(s) 204
BarI GAAGNNNNNNTAC 2 cut(s) 266, 298
BauI CACGAG 1 cut(s) 113
BbsI GAAGAC 2 cut(s) 58, 281
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 30
BcnI CCSGG 1 cut(s) 245
BglII AGATCT 1 cut(s) 347
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 245
BpiI GAAGAC 2 cut(s) 58, 281
BpmI CTGGAG 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 319
BpuMI CCSGG 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 244
Bse1I ACTGG 2 cut(s) 95, 288
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 18, 244
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 95, 288
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 1 cut(s) 238
Bsh1236I CGCG 2 cut(s) 33, 123
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 223
BsiSI CCGG 2 cut(s) 219, 245
BslI CCNNNNNNNGG 2 cut(s) 18, 244
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 4 cut(s) 21, 117, 215, 347
BspACI CCGC 3 cut(s) 31, 121, 209
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 113
BspFNI CGCG 2 cut(s) 33, 123
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 3 cut(s) 29, 112, 210
BspQI GCTCTTC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 204
BsrI ACTGG 2 cut(s) 95, 288
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 4 cut(s) 21, 117, 215, 347
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 139, 173
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 100
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 2 cut(s) 33, 123
BstKTI GATC 4 cut(s) 24, 120, 218, 350
BstMBI GATC 4 cut(s) 21, 117, 215, 347
BstMCI CGRYCG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 2 cut(s) 33, 123
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 2 cut(s) 58, 281
BstX2I RGATCY 3 cut(s) 117, 215, 347
BstYI RGATCY 3 cut(s) 117, 215, 347
BsuRI GGCC 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 209
CciI TCATGA 1 cut(s) 270
CviAII CATG 2 cut(s) 73, 271
CviJI RGCY 7 cut(s) 47, 53, 104, 162, 237, 251, 297
CviKI_1 RGCY 7 cut(s) 47, 53, 104, 162, 237, 251, 297
DdeI CTNAG 1 cut(s) 100
DpnI GATC 4 cut(s) 23, 119, 217, 349
DpnII GATC 4 cut(s) 21, 117, 215, 347
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
FaeI CATG 2 cut(s) 76, 274
FaiI YATR 4 cut(s) 74, 272, 310, 332
FatI CATG 2 cut(s) 72, 270
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 271
HaeIII GGCC 1 cut(s) 237
HapII CCGG 2 cut(s) 219, 245
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 76, 274
HinfI GANTC 2 cut(s) 192, 198
HpaII CCGG 2 cut(s) 219, 245
Hpy188I TCNGA 3 cut(s) 197, 347, 352
Hpy188III TCNNGA 3 cut(s) 186, 224, 271
Hpy99I CGWCG 2 cut(s) 10, 192
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 2 cut(s) 139, 173
HpyCH4IV ACGT 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 76, 274
Kzo9I GATC 4 cut(s) 21, 117, 215, 347
LguI GCTCTTC 1 cut(s) 60
LpnPI CCDG 9 cut(s) 35, 44, 76, 141, 177, 232, 249, 258, 301
Lsp1109I GCAGC 1 cut(s) 238
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 290
MalI GATC 4 cut(s) 23, 119, 217, 349
MboI GATC 4 cut(s) 21, 117, 215, 347
MboII GAAGA 4 cut(s) 47, 58, 239, 286
MflI RGATCY 3 cut(s) 117, 215, 347
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 3 cut(s) 93, 241, 294
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
MseI TTAA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 237
MspI CCGG 2 cut(s) 219, 245
MspR9I CCNGG 1 cut(s) 245
MvnI CGCG 2 cut(s) 33, 123
NciI CCSGG 1 cut(s) 245
NdeII GATC 4 cut(s) 21, 117, 215, 347
NlaIII CATG 2 cut(s) 76, 274
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 290
PagI TCATGA 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 206
PsuI RGATCY 3 cut(s) 117, 215, 347
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 4 cut(s) 21, 117, 215, 347
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 209
SetI ASST 6 cut(s) 29, 49, 235, 268, 299, 305
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SsiI CCGC 3 cut(s) 31, 121, 209
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 139, 173
TaiI ACGT 1 cut(s) 29
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 259, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.