Rh4CG239600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0013404
Physical Location & Seq
Reverse (-)
48514195 .. 48514942
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG239600.1

Sequence Viewer

Length: 552 bp
ATGATCTGGACCCCCAAATCTCACACCAAACAAAATCTATTACCAGAAGAAGAAGTTCACTCTCGTCTCTCAGAGCGAAGCAGAGAGAAAATGGGGTCGCCCACGGCAAGGATCACGTTCCGCGTAGTAATGTTAGCTCTGGCTCTTCTGGTCGTCTTCTACATGGGTCGTCCTCTGTACTGGAAAATCTCAGCCACCATCCACGAGATCCGCGAAAACAGACAGACCGTTAAGCAAGGTTGCTACATTCATTCATTCTTTCACTTTGACTTTTTCTGCTTCTGGGTTTTTCTGGGTTTCTCATTCTGTACTGGAATTGGGTTCAGGTCTGTCGCAGATTGTGCTGGAAGCCCAGAGAACTGTGGGTTGGTATCACGACGAGTCGGATTCGGGTGCCCGCGAAGATCGGGTCGGGAAGAAGGTGGCCACGACCCGGAGGCTGCTGTTCAGTCAGGTTTCATGAAGACCCTTTACTCCAGTCACTGCTTGAGGTTTCTATGTGATGATGTCAGTTGTGGCACAGTGGGTCTGTTCAGATCTGATTTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.78

Weight (kDa)

8.79

Isoelectric Point (pI)

62.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18850
fragaria_vesca FvH4_4g16860
malus_domestica MD13G1176100.v1.1 MD16G1177900.v1.1
prunus_persica Prupe.1G145200_v2.0.a1
pyrus_communis pycom13g15180 pycom16g14930
rosa_chinensis RchiOBHm_Chr4g0420431
rosa_multiflora Rmu_co8133642.1_g000001 Rmu_sc0002248.1_g000025 Rmu_sc0033516.1_g000002
rosa_roxburghii Rroxscaffold_5G00363070
rosa_rugosa Rorug04G0163800
rosa_samantha Rh4AG225300 Rh4BG228100 Rh4CG239600 Rh4DG223800
rosa_wichuraiana Rw4G019450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 393
AccII CGCG 3 cut(s) 123, 213, 400
AciI CCGC 3 cut(s) 121, 211, 398
AclWI GGATC 2 cut(s) 119, 202
AcoI YGGCCR 1 cut(s) 424
AfaI GTAC 2 cut(s) 179, 310
AfiI CCNNNNNNNGG 2 cut(s) 108, 433
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 119, 202
AlwNI CAGNNNCTG 1 cut(s) 483
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 440
ArsI GACNNNNNNTTYG 2 cut(s) 394, 426
Asp700I GAANNNNTTC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 434
AvaII GGWCC 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 426
BanI GGYRCC 1 cut(s) 393
BarI GAAGNNNNNNTAC 2 cut(s) 455, 487
BauI CACGAG 1 cut(s) 203
BbsI GAAGAC 2 cut(s) 148, 470
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 120
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 1 cut(s) 71
BglII AGATCT 1 cut(s) 536
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 434
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 2 cut(s) 11, 395
BmrFI CCNGG 1 cut(s) 434
BpiI GAAGAC 2 cut(s) 148, 470
BpmI CTGGAG 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 508
BpuMI CCSGG 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 433
Bse1I ACTGG 3 cut(s) 185, 316, 477
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 108, 433
BseMII CTCAG 2 cut(s) 84, 204
BseNI ACTGG 3 cut(s) 185, 316, 477
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 1 cut(s) 427
Bsh1236I CGCG 3 cut(s) 123, 213, 400
BshFI GGCC 1 cut(s) 426
BshNI GGYRCC 1 cut(s) 393
BsiSI CCGG 1 cut(s) 434
BslI CCNNNNNNNGG 2 cut(s) 108, 433
BsmAI GTCTC 1 cut(s) 71
BsmBI CGTCTC 1 cut(s) 71
BsnI GGCC 1 cut(s) 426
Bsp1286I GDGCHC 1 cut(s) 398
Bsp143I GATC 5 cut(s) 3, 111, 207, 404, 536
BspACI CCGC 3 cut(s) 121, 211, 398
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 83, 203
BspFNI CGCG 3 cut(s) 123, 213, 400
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 11, 395
BspPI GGATC 2 cut(s) 119, 202
BspQI GCTCTTC 1 cut(s) 150
BspT107I GGYRCC 1 cut(s) 393
BsrI ACTGG 3 cut(s) 185, 316, 477
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 5 cut(s) 3, 111, 207, 404, 536
BssSI CACGAG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 229, 362, 523
Bst6I CTCTTC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 398
BstDEI CTNAG 2 cut(s) 70, 190
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 3 cut(s) 123, 213, 400
BstKTI GATC 5 cut(s) 6, 114, 210, 407, 539
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 5 cut(s) 3, 111, 207, 404, 536
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 432
BstSLI GKGCMC 1 cut(s) 398
BstUI CGCG 3 cut(s) 123, 213, 400
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 2 cut(s) 148, 470
BstX2I RGATCY 2 cut(s) 207, 536
BstYI RGATCY 2 cut(s) 207, 536
BsuRI GGCC 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 2 cut(s) 481, 528
Cac8I GCNNGC 1 cut(s) 398
CaiI CAGNNNCTG 1 cut(s) 483
CciI TCATGA 1 cut(s) 459
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 2 cut(s) 178, 309
CviAII CATG 2 cut(s) 163, 460
CviJI RGCY 6 cut(s) 137, 143, 194, 351, 426, 440
CviKI_1 RGCY 6 cut(s) 137, 143, 194, 351, 426, 440
CviQI GTAC 2 cut(s) 178, 309
DdeI CTNAG 2 cut(s) 70, 190
DpnI GATC 5 cut(s) 5, 113, 209, 406, 538
DpnII GATC 5 cut(s) 3, 111, 207, 404, 536
EaeI YGGCCR 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 2 cut(s) 166, 463
FaiI YATR 3 cut(s) 164, 461, 499
FatI CATG 2 cut(s) 162, 459
FauI CCCGC 1 cut(s) 405
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 441
GluI GCNGC 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 1 cut(s) 426
HapII CCGG 1 cut(s) 434
Hin1II CATG 2 cut(s) 166, 463
HinfI GANTC 2 cut(s) 381, 387
HpaII CCGG 1 cut(s) 434
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 4 cut(s) 73, 386, 536, 541
Hpy188III TCNNGA 4 cut(s) 7, 375, 413, 460
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 381
HpyAV CCTTC 1 cut(s) 413
HpyCH4III ACNGT 3 cut(s) 229, 362, 523
HpyCH4IV ACGT 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 2 cut(s) 70, 190
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 2 cut(s) 166, 463
Kzo9I GATC 5 cut(s) 3, 111, 207, 404, 536
LguI GCTCTTC 1 cut(s) 150
Lsp1109I GCAGC 1 cut(s) 427
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 479
MalI GATC 5 cut(s) 5, 113, 209, 406, 538
MboI GATC 5 cut(s) 3, 111, 207, 404, 536
MboII GAAGA 7 cut(s) 59, 62, 137, 148, 414, 428, 475
MflI RGATCY 2 cut(s) 207, 536
MhlI GDGCHC 1 cut(s) 398
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 1 cut(s) 315
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 1 cut(s) 390
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 3 cut(s) 183, 430, 483
Mox20I TGGCCA 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 54
MscI TGGCCA 1 cut(s) 426
MseI TTAA 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 426
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 434
MvnI CGCG 3 cut(s) 123, 213, 400
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 434
NdeII GATC 5 cut(s) 3, 111, 207, 404, 536
NlaIII CATG 2 cut(s) 166, 463
NlaIV GGNNCC 2 cut(s) 11, 395
NmuCI GTSAC 1 cut(s) 479
PagI TCATGA 1 cut(s) 459
PciSI GCTCTTC 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 387
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 11, 395
PspPI GGNCC 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 483
PsuI RGATCY 2 cut(s) 207, 536
RsaI GTAC 2 cut(s) 179, 310
RsaNI GTAC 2 cut(s) 178, 309
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 5 cut(s) 3, 111, 207, 404, 536
Sau96I GGNCC 1 cut(s) 9
SchI GAGTC 1 cut(s) 390
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 1 cut(s) 398
SetI ASST 7 cut(s) 119, 139, 241, 329, 424, 457, 494
SinI GGWCC 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
Sse9I AATT 1 cut(s) 315
SsiI CCGC 3 cut(s) 121, 211, 398
StyD4I CCNGG 1 cut(s) 432
TaaI ACNGT 3 cut(s) 229, 362, 523
TaiI ACGT 1 cut(s) 119
TasI AATT 1 cut(s) 315
TatI WGTACW 2 cut(s) 177, 308
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 488, 528
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 4 cut(s) 239, 243, 448, 476
TspRI CASTG 2 cut(s) 488, 528
VpaK11BI GGWCC 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.