FvH4_4g17470

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018021
Physical Location & Seq
Reverse (-)
21412307 .. 21413696
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17470.t1

Sequence Viewer

Length: 456 bp
ATGAATTGCATGAAAAAATATTCCTGTAGATTCCAGCCCTCATGTCCTGGTCTGGAAAGTACTGAAGGAACTCCTTTTAAAATCCCCAACAGTAAAGATTACTTCACCACTCCAAATCGCAACTTAATATATGGAGCTCAAACACTTCTGCAAACTGTGCAATTTTTACCTTTTTCTTATCTGATGAGCTGTGCAAGCGAGTTCATTGCTAAATGTTACATGAGGAGGACATTTATATCGGGTTTCACTGGGAGTGCAGGCACTGCTGTTGTCACCAAAGATAAAGCAGCTCTTTGGACAGATGGGCTGAAAAGCATTGAAGGCATATTGTTACGCTTGGCTGAATTAGAAGAGGCAGATTGGAGTTGGTATCCATCAAAATCTCTCCCACCAGCTTTTCAACCGGATGACCTTACTGAACTTAGTTTGGTGCATAGCAATATTGATCACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

152

Amino Acids

16.95

Weight (kDa)

6.09

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018021)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05630 FvH4_4g17470
rosa_chinensis RchiOBHm_Chr1g0378451
rosa_laevigata RLG00000028423
rosa_multiflora Rmu_sc0026514.1_g000001
rosa_roxburghii Rroxscaffold_1G00071590 Rroxscaffold_1G00071830 Rroxscaffold_2G00138070
rosa_rugosa Rorug02G0090500 Rorug04G0294700
rosa_samantha Rh2AG139300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 2 cut(s) 320, 401
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 4 cut(s) 137, 189, 290, 395
AluI AGCT 4 cut(s) 137, 189, 290, 395
Alw21I GWGCWC 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 287
AsuHPI GGTGA 3 cut(s) 97, 265, 440
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 299
BccI CCATC 2 cut(s) 296, 382
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 48
BciVI GTATCC 1 cut(s) 381
BclI TGATCA 1 cut(s) 445
BfmI CTRYAG 1 cut(s) 25
BfuI GTATCC 1 cut(s) 381
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 48
BmrI ACTGGG 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 403
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 1 cut(s) 253
BssMI GATC 1 cut(s) 445
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 92, 157
Bst6I CTCTTC 1 cut(s) 345
BstAPI GCANNNNNTGC 2 cut(s) 157, 263
BstC8I GCNNGC 2 cut(s) 196, 259
BstDEI CTNAG 1 cut(s) 422
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 1 cut(s) 448
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 4 cut(s) 157, 195, 263, 321
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 299
BsuI GTATCC 1 cut(s) 381
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 246, 261
Cac8I GCNNGC 2 cut(s) 196, 259
CaiI CAGNNNCTG 1 cut(s) 263
Csp6I GTAC 1 cut(s) 60
CviAII CATG 3 cut(s) 10, 42, 220
CviJI RGCY 7 cut(s) 37, 137, 189, 290, 307, 341, 395
CviKI_1 RGCY 7 cut(s) 37, 137, 189, 290, 307, 341, 395
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 422
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
DraI TTTAAA 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 139
FaeI CATG 3 cut(s) 13, 45, 223
FaiI YATR 8 cut(s) 11, 43, 130, 132, 221, 236, 326, 435
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FatI CATG 3 cut(s) 9, 41, 219
FbaI TGATCA 1 cut(s) 445
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
HapII CCGG 1 cut(s) 404
Hin1II CATG 3 cut(s) 13, 45, 223
HinfI GANTC 1 cut(s) 30
HpaII CCGG 1 cut(s) 404
HphI GGTGA 3 cut(s) 97, 265, 440
Hpy188I TCNGA 2 cut(s) 183, 455
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 59, 314
HpyCH4III ACNGT 2 cut(s) 92, 157
HpyCH4V TGCA 6 cut(s) 9, 151, 160, 194, 257, 433
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 195, 263, 321
HpyF3I CTNAG 1 cut(s) 422
Hsp92II CATG 3 cut(s) 13, 45, 223
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 1 cut(s) 445
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 9 cut(s) 33, 37, 38, 47, 60, 234, 243, 405, 417
Lsp1109I GCAGC 1 cut(s) 299
MaeIII GTNAC 3 cut(s) 215, 271, 330
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 3 cut(s) 4, 161, 344
MnlI CCTC 4 cut(s) 49, 216, 219, 346
MseI TTAA 2 cut(s) 78, 125
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 157, 195, 263, 321
NdeII GATC 1 cut(s) 445
NlaIII CATG 3 cut(s) 13, 45, 223
NmuCI GTSAC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 1 cut(s) 289
Psp124BI GAGCTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 263
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 2 cut(s) 78, 125
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 445
ScaI AGTACT 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 139
SetI ASST 7 cut(s) 139, 172, 191, 292, 397, 414, 453
SfcI CTRYAG 1 cut(s) 25
Sse9I AATT 3 cut(s) 4, 161, 344
SspI AATATT 2 cut(s) 20, 442
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 2 cut(s) 92, 157
TasI AATT 3 cut(s) 4, 161, 344
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 78, 125
Tru9I TTAA 2 cut(s) 78, 125
TscAI CASTG 2 cut(s) 253, 268
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 3 cut(s) 17, 26, 193
TspRI CASTG 2 cut(s) 253, 268
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.